TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|8923460|ref|NP_060316.1| tRNA selenocysteine 1-associated protein 1 [Homo sapiens] (287 letters) Database: genome.fa 1696 sequences; 31,706,682 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value mex274j03.q1k 76 2e-14 1036_mexFOS1_32m13.q1kpIBR 59 4e-09 mex488e14.p1k 50 2e-06 mex551l04.q1k 41 9e-04 mex128k22.q1k 39 0.004 mex163a21.p1k 38 0.007 mex386h18.p1k 35 0.047 mex192d19.q1k 35 0.062 mex532m14.p1k 34 0.10 mex491c16.p1k 33 0.23 mex383d04.q1k 33 0.23 mex427f11.p1k 32 0.52 mex496f12.q1k 31 0.89 mex121b19.q1k 31 1.2 1036_mexFOS1_29l18.q1kpIBR 28 7.5 mex307l09.q1k 28 9.8 mex372o01.p1k 28 9.8 >mex274j03.q1k Length = 32447 Score = 76.3 bits (186), Expect = 2e-14 Identities = 55/168 (32%), Positives = 90/168 (53%), Gaps = 4/168 (2%) Frame = +1 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 AS+++GDL+ ++E + F G T+++V++ R+ +T GY +V F + +AEK + Sbjct: 18052 ASIYVGDLDAAINEPQLVELFKPFG-TILNVRVCRDIITQRSLGYGYVNFDNHESAEKAI 18228 Query: 63 HKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYS----LFVGDLTPDVDDGMLYEFFVK 118 +N K + K +L + +Q D + YS +FV +L DVD L++ F K Sbjct: 18229 ESMNFKRVGD----KCVRLMW----QQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTK 18384 Query: 119 VYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 166 + S KV+ D+ G S+GYGFV F DE K A+ + GA S+ Sbjct: 18385 -FGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASE 18525 >1036_mexFOS1_32m13.q1kpIBR Length = 53305 Score = 58.9 bits (141), Expect = 4e-09 Identities = 52/155 (33%), Positives = 75/155 (48%), Gaps = 4/155 (2%) Frame = -2 Query: 4 SLWMGDLEPYMD--ENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC 61 S+++GDL + E I+ F+T+ V+SVK+ R+ T GY +V F A AEK Sbjct: 27018 SVYVGDLPIDLPRPEEAINNLFSTVAP-VVSVKVCRDMATQRSLGYGYVNFQTPADAEKV 26842 Query: 62 LHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKV-- 119 + +N G TP ++ ++ ++ S ++FV L V+ L F K Sbjct: 26841 IDALN---YTGITPGRQIRVMFSIRDPIQRKSGMNNVFVKKLDTAVNAKELQAAFTKCGR 26671 Query: 120 YPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRAL 154 SC KV LD G SKGYGFV+F K AL Sbjct: 26670 VLSC---KVALDSAGNSKGYGFVQFETADGAKAAL 26575 >mex488e14.p1k Length = 70354 Score = 49.7 bits (117), Expect = 2e-06 Identities = 28/78 (35%), Positives = 44/78 (56%) Frame = +2 Query: 94 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRA 153 P S++VG L PD+ + LY++FV++ P V T S GYG+V F D + ++A Sbjct: 43691 PNPSIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKA 43870 Query: 154 LTECQGAVGLGSKPVRLS 171 L Q LGS+ +R++ Sbjct: 43871 LD--QAGSKLGSRYLRIA 43918 Score = 49.3 bits (116), Expect = 3e-06 Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 2/158 (1%) Frame = +2 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 S+W+G L+P + E + F +G V SV++ + T GY +V F D A AEK L Sbjct: 43700 SIWVGGLDPDLQEQKLYDYFVRIG-PVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALD 43876 Query: 64 KINGKPLPGATPAKRFKLNYATYGKQPD--NSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121 + G+ R+ L A + P S ++ V L VD L E F K + Sbjct: 43877 Q------AGSKLGSRY-LRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSK-FG 44032 Query: 122 SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG 159 + D+ G S+GY + F E A+ E G Sbjct: 44033 RLTAIGLACDEKGESRGYARISFEREESAVDAVREMDG 44146 Score = 47.8 bits (112), Expect = 9e-06 Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 14/195 (7%) Frame = +2 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 +L++ +L+P + + + FA GE V S K+ AG +V F A + + Sbjct: 44225 NLYVKNLDPAVTDEKLRAFFAKYGE-VSSAKVRDLGAVQSEAGLGYVAFQKHEDAARAVE 44401 Query: 64 KINGK---------PLPGATPAKRFKLNYATYGKQPDNSPEYS----LFVGDLTPDVDDG 110 ++NGK PL + R + ++ + + ++S L+V V Sbjct: 44402 ELNGKECEIAKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSE 44581 Query: 111 MLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 169 L E F + Y V++D +TGVS+ +GFV D+ +A+ E G+ L +P+ Sbjct: 44582 RLEELFQR-YGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRPLF 44758 Query: 170 LSVAIPKASRVKPVE 184 ++ A+ K +R + +E Sbjct: 44759 VTYALRKDARRQNLE 44803 >mex551l04.q1k Length = 24583 Score = 41.2 bits (95), Expect = 9e-04 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 1/113 (0%) Frame = -1 Query: 68 KPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGK 127 KP P ATP Y PD +L V L P +++ +YE F + + K Sbjct: 22336 KPEPIATPVSGEGSTSGGYAFDPDALR--NLIVNYLPPLMNEAQVYELFGQ-FGRIESVK 22166 Query: 128 VVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179 ++ D+ TG S+GYGFVK+ A++ C +G K ++++ A A++ Sbjct: 22165 IIYDKITGESRGYGFVKYQFFFSATYAVS-CLNRFEIGGKKLKVAYANAPAAK 22010 Score = 35.8 bits (81), Expect = 0.036 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -1 Query: 90 PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDEL 148 P+ +L V + VD+ L + F + P G K+V D +T S+GYGFVK+ Sbjct: 17488 PEPEALRNLMVNYIPTTVDEVQLRQLFERFGP-IEGVKIVCDRETRQSRGYGFVKYHSAA 17312 Query: 149 EQKRALTECQG 159 ++A+ E G Sbjct: 17311 SAQQAVNELNG 17279 Score = 35.8 bits (81), Expect = 0.036 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -1 Query: 90 PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDEL 148 P+ +L V + VD+ L + F + P G K+V D +T S+GYGFVK+ Sbjct: 7909 PEPEALRNLMVNYIPTTVDEVQLRQLFERFGP-IEGVKIVCDRETRQSRGYGFVKYHSAA 7733 Query: 149 EQKRALTECQG 159 ++A+ E G Sbjct: 7732 SAQQAVNELNG 7700 Score = 34.3 bits (77), Expect = 0.10 Identities = 24/75 (32%), Positives = 38/75 (50%) Frame = -1 Query: 10 LEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP 69 L P M+E + F G + SVKII +++TG GY FV++ +A + +N Sbjct: 22237 LPPLMNEAQVYELFGQFGR-IESVKIIYDKITGESRGYGFVKYQFFFSATYAVSCLNRFE 22061 Query: 70 LPGATPAKRFKLNYA 84 + G K+ K+ YA Sbjct: 22060 IGG----KKLKVAYA 22028 Score = 33.1 bits (74), Expect = 0.23 Identities = 23/76 (30%), Positives = 40/76 (52%) Frame = -1 Query: 14 MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 73 +DE + + F G + VKI+ +R T GY FV++ A+A++ ++++NG + Sbjct: 17437 VDEVQLRQLFERFGP-IEGVKIVCDRETRQSRGYGFVKYHSAASAQQAVNELNGFNILN- 17264 Query: 74 TPAKRFKLNYATYGKQ 89 KR K+ A G Q Sbjct: 17263 ---KRLKVALAASGNQ 17225 Score = 33.1 bits (74), Expect = 0.23 Identities = 23/76 (30%), Positives = 40/76 (52%) Frame = -1 Query: 14 MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 73 +DE + + F G + VKI+ +R T GY FV++ A+A++ ++++NG + Sbjct: 7858 VDEVQLRQLFERFGP-IEGVKIVCDRETRQSRGYGFVKYHSAASAQQAVNELNGFNILN- 7685 Query: 74 TPAKRFKLNYATYGKQ 89 KR K+ A G Q Sbjct: 7684 ---KRLKVALAASGNQ 7646 >mex128k22.q1k Length = 4833 Score = 38.9 bits (89), Expect = 0.004 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Frame = +1 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALT 155 +L V L VDD FF + + V+ D TG S+G+GFV+F + RAL Sbjct: 4396 NLLVRFLDHGVDDSQFRAFF-EPFGEITSSMVMRDIFTGESRGFGFVRFARSADAARALR 4572 Query: 156 ECQGAVGLGSKPVRL 170 EC G LG K V + Sbjct: 4573 ECDGK-RLGGKAVNV 4614 >mex163a21.p1k Length = 15393 Score = 38.1 bits (87), Expect = 0.007 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Frame = +2 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRA 153 +LFV L +++D L F + PS K++LD TG SKG+GFV F +E + +A Sbjct: 872 NLFVAKLPRNINDADLLHIFTEFGPS--SAKIMLDAATGKSKGFGFVLFDEEEKGAKA 1039 Score = 37.4 bits (85), Expect = 0.012 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Frame = +3 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQT-GVSKGYGFVKFTDE 147 +LFV L ++ D L + FV+ P+ KV+LD T G SKG+GFV F E Sbjct: 7440 NLFVAKLPRNLTDADLEQIFVQYNPT--SAKVMLDATTGKSKGFGFVLFASE 7589 >mex386h18.p1k Length = 58052 Score = 35.4 bits (80), Expect = 0.047 Identities = 23/65 (35%), Positives = 34/65 (52%) Frame = -2 Query: 89 QPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDEL 148 +P +S + ++FV L P D L E F P ++ +TGVSK GFV+FT+ Sbjct: 3757 EPGHS-DRNIFVSKLPPTFKDADLQELFQNFGPVVSAKVMLNVKTGVSKETGFVQFTNYK 3581 Query: 149 EQKRA 153 + RA Sbjct: 3580 DALRA 3566 >mex192d19.q1k Length = 1938 Score = 35.0 bits (79), Expect = 0.062 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Frame = -2 Query: 90 PDNSPEY--SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTD 146 P N Y L V L DV L+ F + P G +++ D QT + +GYGFV F Sbjct: 539 PSNDERYRKQLIVNYLAQDVSSADLHTLFARFGP-LDGARIIFDRQTSMPRGYGFVYFRY 363 Query: 147 ELEQKRALTECQG 159 K+A+ G Sbjct: 362 PDSAKQAVDTMNG 324 >mex532m14.p1k Length = 125605 Score = 34.3 bits (77), Expect = 0.10 Identities = 20/69 (28%), Positives = 33/69 (47%) Frame = +2 Query: 2 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC 61 + ++++G+L Y E + F+ G V + + N T P G+CFV F A A Sbjct: 53771 STTVYVGNLSFYTTEEQVYNHFSPCGH-VRDIVMGLNEETRSPCGFCFVVFESQAAAALA 53947 Query: 62 LHKINGKPL 70 +H +G L Sbjct: 53948 VHGFDGSLL 53974 >mex491c16.p1k Length = 20313 Score = 33.1 bits (74), Expect = 0.23 Identities = 20/50 (40%), Positives = 29/50 (58%) Frame = +3 Query: 132 QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVK 181 +TG KGYGFV F +E + A+ QG + S V++ +A P+AS K Sbjct: 13182 ETGRCKGYGFVLFENEQDALNAVIALQGH-SIQSTRVQVRLARPEASAKK 13328 >mex383d04.q1k Length = 102110 Score = 33.1 bits (74), Expect = 0.23 Identities = 24/66 (36%), Positives = 31/66 (46%) Frame = -3 Query: 7 MGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKIN 66 M +L P E + R FA V SV+I+R+ TG Y FVEF + A K + Sbjct: 32340 MANLHPETVEEDL-RHFADQFGRVRSVRIVRHHKTGKSCRYAFVEFNLVGEARKAVQFHR 32164 Query: 67 GKPLPG 72 K L G Sbjct: 32163 KKRLKG 32146 >mex427f11.p1k Length = 77191 Score = 32.0 bits (71), Expect = 0.52 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = +1 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALT 155 +LFV L +VDD L E F + + V+ D +G S G FV++ + E RA+ Sbjct: 8119 NLFVRYLPREVDDNRLREIF-SAFGNITSSMVMRDIYSGQSLGTAFVRYEEHEEALRAMR 8295 Query: 156 ECQGAVGLG 164 + G LG Sbjct: 8296 DAHGMPLLG 8322 Score = 32.0 bits (71), Expect = 0.52 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = +1 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALT 155 +LFV L +VDD L E F + + V+ D +G S G FV++ + E RA+ Sbjct: 18451 NLFVRYLPREVDDNRLREIF-SAFGNITSSMVMRDIYSGQSLGTAFVRYEEHEEALRAMR 18627 Query: 156 ECQGAVGLG 164 + G LG Sbjct: 18628 DAHGMPLLG 18654 >mex496f12.q1k Length = 41699 Score = 31.2 bits (69), Expect = 0.89 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 1/94 (1%) Frame = +3 Query: 74 TPAKRFKLNYATYGKQPD-NSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ 132 +P K LN + P + + +L+V L D L+E F + P + Sbjct: 11976 SPMKNDSLNMSVQASDPAARAYDSNLYVASLPEWFTDADLHELFKRFGPIVSAKVMCHKG 12155 Query: 133 TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 166 T KGYGFV F + A +E G V G+K Sbjct: 12156 THHCKGYGFVLFQRTDDAAVARSEMIGHVVGGNK 12257 Score = 30.0 bits (66), Expect = 2.0 Identities = 19/70 (27%), Positives = 31/70 (44%) Frame = +1 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 156 +++V L DD L + F + ++ SKGYGFV F + ++A+ Sbjct: 160 NVYVASLPLSFDDQQLQDLFSPYGRIVSARIMRAKKSHASKGYGFVMFREASSAEKAIEG 339 Query: 157 CQGAVGLGSK 166 G V GS+ Sbjct: 340 LHGRVVDGSR 369 >mex121b19.q1k Length = 60457 Score = 30.8 bits (68), Expect = 1.2 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Frame = -2 Query: 120 YPSCRGGKVVLDQTGVSKGYGFVKFTDE---LEQKRALTECQGAVGLGSKPVRLSVAIPK 176 Y R K++ D GVS+GYGF++F + L R L G + + +S AI Sbjct: 54189 YGPIRNVKLLKDTAGVSRGYGFIEFVNHNVALNTLRMLNNNPTVFG-DQRRLMVSFAIEN 54013 Query: 177 ASRVKPVE 184 S V+ ++ Sbjct: 54012 MSAVQKLQ 53989 >1036_mexFOS1_29l18.q1kpIBR Length = 22285 Score = 28.1 bits (61), Expect = 7.5 Identities = 16/79 (20%), Positives = 32/79 (40%) Frame = -3 Query: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 64 LW+G+L PY+ ++ F G ++ R+ + F+ + + + Sbjct: 13589 LWVGNLVPYITNEKLTEVFEVFGPISSVSRLGRSNM-------AFLHYETVEQCTMAIET 13431 Query: 65 INGKPLPGATPAKRFKLNY 83 + G+P+ G LNY Sbjct: 13430 MKGRPIEGV----MLSLNY 13386 >mex307l09.q1k Length = 53858 Score = 27.7 bits (60), Expect = 9.8 Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Frame = -3 Query: 94 PEYSLFVGDLTPDVDDGMLYEFFVKV-YPSCRGGKVVLD-QTGVSKGYGFVKF 144 PE S+F+G++ + + ++ FF + + ++V D +TG KG+G+V+F Sbjct: 29163 PETSIFLGNVAYNTTEEDVWSFFQEHGIADVKRVRLVRDRETGDCKGFGYVEF 29005 >mex372o01.p1k Length = 99924 Score = 27.7 bits (60), Expect = 9.8 Identities = 21/60 (35%), Positives = 30/60 (50%) Frame = +3 Query: 19 ISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 78 I R T GE++ +++ +RL + FV L ++ L I GKP P AT AKR Sbjct: 39066 IVREDGTAGESLHLWELVHHRLDERVQRFHFVLLGRLLRVKQRL--ILGKPTPHATAAKR 39239 Database: genome.fa Posted date: Jan 16, 2009 12:51 PM Number of letters in database: 31,706,682 Number of sequences in database: 1696 Lambda K H 0.317 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,905,033 Number of Sequences: 1696 Number of extensions: 111654 Number of successful extensions: 515 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 21 Number of HSP's that attempted gapping in prelim test: 399 Number of HSP's gapped (non-prelim): 167 length of query: 287 length of database: 10,568,894 effective HSP length: 99 effective length of query: 188 effective length of database: 10,400,990 effective search space: 1955386120 effective search space used: 1955386120 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (27.7 bits)