TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|8923460|ref|NP_060316.1| tRNA selenocysteine 1-associated protein 1 [Homo sapiens] (287 letters) Database: genome.fa 799 sequences; 32,967,507 total letters Searching.....................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_691 75 7e-14 scaffold_450 60 2e-09 scaffold_393 58 9e-09 scaffold_104 57 2e-08 scaffold_30 52 5e-07 scaffold_144 45 6e-05 scaffold_173 43 3e-04 scaffold_46 39 0.004 scaffold_287 39 0.006 scaffold_18 38 0.008 scaffold_596 37 0.022 scaffold_175 35 0.049 scaffold_402 34 0.14 scaffold_132 34 0.14 scaffold_126 34 0.14 scaffold_65 33 0.25 scaffold_186 32 0.42 scaffold_189 32 0.55 scaffold_142 32 0.55 scaffold_556 31 0.93 scaffold_378 31 0.93 scaffold_762 31 1.2 scaffold_279 29 4.6 scaffold_112 29 4.6 scaffold_55 29 4.6 scaffold_28 29 4.6 scaffold_215 28 7.9 scaffold_94 28 7.9 >scaffold_691 Length = 8334 Score = 74.7 bits (182), Expect = 7e-14 Identities = 35/81 (43%), Positives = 55/81 (67%), Gaps = 1/81 (1%) Frame = +3 Query: 92 NSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQ 150 N + S+++GDL PDV + L F +P+ RG K+++D QTG+ KGYGF+KF +E E+ Sbjct: 6990 NYSDLSIYIGDLAPDVTEPQLLSVFQNKFPTARGAKIIMDPQTGLPKGYGFIKFLNENER 7169 Query: 151 KRALTECQGAVGLGSKPVRLS 171 RAL E QG + +KP++++ Sbjct: 7170 DRALIEMQGFY-INNKPIKVN 7229 Score = 51.2 bits (121), Expect = 9e-07 Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 7/126 (5%) Frame = +3 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEF-----ADLATA 58 S+++GDL P + E + F T KII + TG+P GY F++F D A Sbjct: 7005 SIYIGDLAPDVTEPQLLSVFQNKFPTARGAKIIMDPQTGLPKGYGFIKFLNENERDRALI 7184 Query: 59 EKCLHKINGKPLPGATPA-KRFKLNYATYGKQPDNSP-EYSLFVGDLTPDVDDGMLYEFF 116 E IN KP+ +P KR +T P +++V L P +D+G+L Sbjct: 7185 EMQGFYINNKPIKVNSPTHKRLNSQLSTIPDLSSTDPTNTAIYVSQLDPYIDEGVLQT*V 7364 Query: 117 VKVYPS 122 + Y S Sbjct: 7365 LSYYYS 7382 >scaffold_450 Length = 23892 Score = 59.7 bits (143), Expect = 2e-09 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 3/168 (1%) Frame = -2 Query: 4 SLWMGDLEPYMDENFISRAFATMGET-VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 SL++GDL ++E ++ F+ +G + S+ + R+ T GY +V F + AE+ L Sbjct: 2354 SLYVGDLASDVNEVVLNELFSKVGRNAIASIHVCRDSNTYRSLGYAYVNFYNNHDAERAL 2175 Query: 63 HKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKV--Y 120 +N + G R +Y K+ N ++FV +L VD+ MLY+ F Sbjct: 2174 DTLNYSMIHGKPC--RIMWSYRDPTKRKTNVG--NVFVKNLEKAVDNAMLYDVFSSFGNI 2007 Query: 121 PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 168 SC+ V + G+SKGYG+V F +A+ G + LG KP+ Sbjct: 2006 LSCK----VEYEKGISKGYGYVHFETSESSGKAIERINGTLVLG-KPM 1878 Score = 51.2 bits (121), Expect = 9e-07 Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 6/146 (4%) Frame = -3 Query: 41 TGIPAGYCFVEFADLATAEKCLH------KINGKPLPGATPAKRFKLNYATYGKQPDNSP 94 TG G VEF + A+K L +INGKP+ R K + + Sbjct: 1639 TGKSKGLGTVEFKNCEDAQKLLAVEADSIQINGKPIT----FDRVKNKIERVTELRKKTT 1472 Query: 95 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRAL 154 + +LF+ ++ ++ + E F K + + G K+V D++G +KGYGF+ F++ E +AL Sbjct: 1471 DQTLFLSNIDESIEKETIKEEFSK-HGAIIGCKIVQDESGKNKGYGFITFSEVSEANKAL 1295 Query: 155 TECQGAVGLGSKPVRLSVAIPKASRV 180 G G+K + +S++ K ++ Sbjct: 1294 EALNGFT-FGNKQITVSLSSNKEQQL 1220 Score = 28.1 bits (61), Expect = 7.9 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = -3 Query: 130 LDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV 180 +D TG SKG G V+F + + ++ L ++ + KP+ K RV Sbjct: 1648 IDSTGKSKGLGTVEFKNCEDAQKLLAVEADSIQINGKPITFDRVKNKIERV 1496 >scaffold_393 Length = 30415 Score = 57.8 bits (138), Expect = 9e-09 Identities = 28/76 (36%), Positives = 49/76 (64%) Frame = +2 Query: 95 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRAL 154 ++ +F+GDL DV D ML + FVK YP+ KV+ +++G +KG+GFV F+ + A+ Sbjct: 18071 DFRIFIGDLGNDVTDDMLMQAFVK-YPTLLKAKVIREKSGKTKGFGFVSFSGSNDYLNAM 18247 Query: 155 TECQGAVGLGSKPVRL 170 + G +G++P++L Sbjct: 18248 RDMNGKY-IGNRPIKL 18292 >scaffold_104 Length = 79661 Score = 56.6 bits (135), Expect = 2e-08 Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 20/199 (10%) Frame = -2 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 A L + DL+P + E+ + F V+ V I +++LT G +VEF A AE L Sbjct: 23965 ACLIVRDLDPMVTESLLMELFI-QAAPVVKVFIPKDKLTQQHTGRAYVEFQSSADAEYAL 23789 Query: 63 HKINGKPLPGATPAKRFKLNYAT------------------YGKQPDNSPEY--SLFVGD 102 + L K K+ T Y ++ + + +LF+G+ Sbjct: 23788 KVMKFVRLFN----KEIKIKKVTIIHFTILITSINILTLLFY*QESTDKIDIGANLFIGN 23621 Query: 103 LTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVG 162 L DVD+ +L++ F + K++ D+ G SKG+GF+ F D + A E Sbjct: 23620 LDTDVDERILFDTFSRFGTILFTPKIMRDENGQSKGFGFISF-DSFDASDAAIESLNGQF 23444 Query: 163 LGSKPVRLSVAIPKASRVK 181 L +KP+ +S A K S K Sbjct: 23443 LCNKPISVSYARKKDSNEK 23387 >scaffold_30 Length = 136868 Score = 52.0 bits (123), Expect = 5e-07 Identities = 37/153 (24%), Positives = 70/153 (45%) Frame = -3 Query: 14 MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 73 + E + F +G V ++++ R+ T Y +V + + A AE+ L +N P+ G Sbjct: 18816 VSEQTLFEVFNQVG-LVSNIRVCRDTNTRRSLSYAYVNYYNAADAERALDTLNNTPIRG- 18643 Query: 74 TPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQT 133 K ++ ++ S ++F+ +L +D LY+ F + + KVV D Sbjct: 18642 ---KPCRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTF-SAFGNILSCKVVTDDN 18475 Query: 134 GVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 166 SKG+GFV + + +A+ + G + G K Sbjct: 18474 NSSKGFGFVHYESQDSADKAIAKVNGMMINGQK 18376 Score = 51.2 bits (121), Expect = 9e-07 Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 5/161 (3%) Frame = -3 Query: 29 TVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK-----PLPGATPAKRFKLNY 83 T+ +V I+ + TG G+ F F A+ + NGK PL K+ + Sbjct: 18240 TITNVAIMLDEKTGKSKGFAFANFESADAAKNVVEIENGKVFHGKPLYAGRAQKKIEREA 18061 Query: 84 ATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVK 143 +L++ ++ +D+ L E F + + D+ SKG+GFV Sbjct: 18060 ELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAVVMKDDKATTSKGFGFVC 17881 Query: 144 FTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVKPVE 184 +T E RA+TE G + +G+KP+ +++A K R +E Sbjct: 17880 YTSPDEATRAVTEMNGRM-IGTKPLYVALAQRKDIRRAQLE 17761 >scaffold_144 Length = 71145 Score = 45.1 bits (105), Expect = 6e-05 Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 2/124 (1%) Frame = +1 Query: 49 FVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVD 108 ++ F A+A+K + +NGK L G K +++ A++ D+ + +FVG++ +++ Sbjct: 64594 YIVFDTEASAKKAVDSMNGKELFG----KHIRVDLASHKPSKDSDAK-CVFVGNVPYEIE 64758 Query: 109 DGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQG-AVGLGSK 166 + L+ F + ++V DQ + + KG+G+V F E K A T + LG++ Sbjct: 64759 EEELFLLFNTTFGEVLSVRIVRDQHSNIGKGFGYVNFNTE---KAATTAIDAKTLKLGNR 64929 Query: 167 PVRL 170 +R+ Sbjct: 64930 EIRI 64941 >scaffold_173 Length = 63754 Score = 42.7 bits (99), Expect = 3e-04 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Frame = +1 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALT 155 +LFV L P +DD L++ F + Y + +V+ D+ TG +KGYGFVKF + + + Sbjct: 34675 NLFVFHLPPFIDDAYLFQLFSQ-YGKLQSVRVITDKDTGENKGYGFVKFYNREDAFKCQK 34851 Query: 156 ECQGAVGLGSK 166 E G +GSK Sbjct: 34852 EMNG-FRIGSK 34881 Score = 32.7 bits (73), Expect = 0.32 Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 21/132 (15%) Frame = +2 Query: 49 FVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVD 108 FV F++ ++ + +++G R Y + +P +LF+ L DV Sbjct: 33332 FVRFSNPNESQAAIKELDGFQFQNKKLLCRLSNLYTNLNSK---NPSNNLFIKPLPADVT 33502 Query: 109 DGML-------YEFFVKV--------------YPSCRGGKVVLDQTGVSKGYGFVKFTDE 147 DG Y K Y KV+LDQ G SK GFV+F ++ Sbjct: 33503 DGKFSYLIKSFYRLLTKFSFVFTEQLRKLFEPYGKIVECKVMLDQNGQSKFAGFVRFFND 33682 Query: 148 LEQKRALTECQG 159 E A+ G Sbjct: 33683 SEAASAIDAMNG 33718 >scaffold_46 Length = 117471 Score = 38.9 bits (89), Expect = 0.004 Identities = 25/83 (30%), Positives = 42/83 (50%) Frame = -1 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 +L++ +L D+ + R F+ G + SVKI+R+ T + GY FV L + ++ Sbjct: 70863 NLYVYNLPSDADDALLYRLFSPSG-AIASVKIVRDPNTQVCKGYGFVRMLSLPDSYAAIN 70687 Query: 64 KINGKPLPGATPAKRFKLNYATY 86 ING + G T + FK Y + Sbjct: 70686 SINGIQVGGKTISVSFKK*YLIF 70618 Score = 38.1 bits (87), Expect = 0.008 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 16/141 (11%) Frame = -1 Query: 47 YCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSP------------ 94 + +E L ++ + + P P A P + Y T P SP Sbjct: 71058 FLIIERQKLQQKQRLNMRFSPYPSPIAAPITQMYPYYQTMPTLPTLSPIMQPPILTTKTI 70879 Query: 95 ---EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQ 150 +L+V +L D DD +LY F + K+V D T V KGYGFV+ + Sbjct: 70878 TQDPTNLYVYNLPSDADDALLYRLF-SPSGAIASVKIVRDPNTQVCKGYGFVRMLSLPDS 70702 Query: 151 KRALTECQGAVGLGSKPVRLS 171 A+ G + +G K + +S Sbjct: 70701 YAAINSING-IQVGGKTISVS 70642 Score = 29.3 bits (64), Expect = 3.5 Identities = 13/21 (61%), Positives = 18/21 (85%), Gaps = 1/21 (4%) Frame = -3 Query: 127 KVVLD-QTGVSKGYGFVKFTD 146 KV++D TG+S+G+GFVKF D Sbjct: 71695 KVMVDLNTGLSRGFGFVKFKD 71633 >scaffold_287 Length = 42978 Score = 38.5 bits (88), Expect = 0.006 Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 13/176 (7%) Frame = +2 Query: 14 MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG- 72 + EN + +F T G T+ S +I+ ++ T GY +++++ + A + ++NGK L Sbjct: 19157 LTENNLYESFKTFG-TIESCRIVIDKETNESKGYAYIKYSKTSAAALAIEEMNGKILNAD 19333 Query: 73 --ATPAK------RFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCR 124 TP K + N P++ P S ++ + L F K + + Sbjct: 19334 ITKTPIKVLIAEAKGTKNKPLLSTDPEDHPPNSRLFVVCNKNITEEELNNKF-KDFGNLE 19510 Query: 125 GGKVVLDQ-TGVSKGYGFVKFTDELE---QKRALTECQGAVGLGSKPVRLSVAIPK 176 K++ ++ + SKG FVK++ + E +G P+++ +A PK Sbjct: 19511 HVKLIREKHSNESKGCAFVKYSKSSTACIAMETINEEEGLKNGEEHPIKVFIAQPK 19678 >scaffold_18 Length = 151376 Score = 38.1 bits (87), Expect = 0.008 Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Frame = +1 Query: 1 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEK 60 ++ +L++ LE + + + + F+ G+ ++++KI N G GY F+EF + +A++ Sbjct: 47836 LSPALYISGLEWWTKDQELEKIFSEFGK-IVTLKIFENENNGKSKGYAFIEFQNQDSAQQ 48012 Query: 61 CLHKINGKPLPGATPAKR--FKLNY 83 K++ K + G R +LNY Sbjct: 48013 AKSKLDRKSINGKEMVIRSLSQLNY 48087 >scaffold_596 Length = 12685 Score = 36.6 bits (83), Expect = 0.022 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = +1 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALT 155 +LFV ++ DD L E F + P + ++ ++ T SKG+GFV+F D Q++ L Sbjct: 8731 TLFVRNIPYSFDDAKLLEAFKEYSP--KSAHIIFNKATSKSKGFGFVEFEDSANQQKGLA 8904 Query: 156 ECQGAVGLGSKPVRLSVAI 174 + V G + + + +A+ Sbjct: 8905 LHKQKVD-GEREISVKIAL 8958 >scaffold_175 Length = 63307 Score = 35.4 bits (80), Expect = 0.049 Identities = 35/150 (23%), Positives = 61/150 (40%) Frame = +3 Query: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 64 +++G L ++E+ I F GE + +VK++ + A FV FA + Sbjct: 10215 IFVGQLPSRVNEDEIRTYFEECGE-ITNVKVLSGNPQRVAA---FVTFAT-EDGKNAAIA 10379 Query: 65 INGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCR 124 NGK G P ++N A ++ ++ VD+ ++ EFF R Sbjct: 10380 FNGKDFNGNGP---LRINAANSKPSDGEGEPTTIVARNIAFSVDETLVKEFFQGCGKITR 10550 Query: 125 GGKVVLDQTGVSKGYGFVKFTDELEQKRAL 154 + +G KG+ FV F E +A+ Sbjct: 10551 VSLPTYEDSGRLKGFAFVSFDSEEAVDKAI 10640 >scaffold_402 Length = 29269 Score = 33.9 bits (76), Expect = 0.14 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 14/126 (11%) Frame = -1 Query: 43 IPAGYCFVEFADLATAEKCLHKINGKPLPG-------------ATPAKRFKLN-YATYGK 88 +P G+ F+EF+ A +C+ ++NG + AK N ++ + Sbjct: 3523 LPCGFGFIEFSSKQGAYECIKRLNGATIDDHEISLKLSDKNEVNVKAKEMPENKRSSLPQ 3344 Query: 89 QPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDEL 148 + P + + +L + + + F Y + ++ G +G+GFV+F E Sbjct: 3343 NAKSKPSSKIIIKNLPFESTTKEIRKLFA-AYGEIQSVRIPKKPNGGHRGFGFVEFLTEE 3167 Query: 149 EQKRAL 154 E K A+ Sbjct: 3166 EAKNAM 3149 >scaffold_132 Length = 73818 Score = 33.9 bits (76), Expect = 0.14 Identities = 22/91 (24%), Positives = 43/91 (47%) Frame = +3 Query: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 64 +++G L + E I F+ GE + ++RN+ TG G+CF+ + + + + Sbjct: 60744 IYVGGLNFDLTEGDIISIFSQYGE-ISECNLVRNKETGKSQGFCFIGYDNQKSTVLAVDN 60920 Query: 65 INGKPLPGATPAKRFKLNYATYGKQPDNSPE 95 NG + G K K+++ K+P + E Sbjct: 60921 FNGIKVLG----KTIKVDHVKDYKRPKKNNE 61001 >scaffold_126 Length = 74790 Score = 33.9 bits (76), Expect = 0.14 Identities = 15/50 (30%), Positives = 31/50 (62%) Frame = -2 Query: 98 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDE 147 +F+G ++ +V + L E F + + + +++ ++ G SKG+GFV F D+ Sbjct: 62960 VFIGGISKNVKEEELKELFNEKVGNVKEVRLMKEKNGESKGFGFVMFEDK 62811 >scaffold_65 Length = 101362 Score = 33.1 bits (74), Expect = 0.25 Identities = 25/84 (29%), Positives = 40/84 (47%) Frame = +1 Query: 93 SPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKR 152 SP L V L+P ++ + + F K ++ +TG SK +GFV F ++ + R Sbjct: 52162 SPSCVLGVFGLSPSTEERDIKDEFTKFGKIDHVDLIMDRKTGRSKCFGFVYFENKDDAVR 52341 Query: 153 ALTECQGAVGLGSKPVRLSVAIPK 176 A ECQ + L K +R + K Sbjct: 52342 AKEECQDLI-LHGKHIRTDFSATK 52410 >scaffold_186 Length = 61343 Score = 32.3 bits (72), Expect = 0.42 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Frame = -3 Query: 90 PDNSP--EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTD 146 P N P E+ +FVG L ++++ + + + Y + +V D TG+SKGY F ++ D Sbjct: 50217 PTNVPDSEHKIFVGGLPSNLNEEQV-KTLLSAYGKLKAFNLVKDTNTGISKGYAFCEYLD 50041 Score = 30.4 bits (67), Expect = 1.6 Identities = 14/63 (22%), Positives = 32/63 (50%) Frame = -3 Query: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 64 +++G L ++E + + G+ + + ++++ TGI GY F E+ D ++ Sbjct: 50187 IFVGGLPSNLNEEQVKTLLSAYGK-LKAFNLVKDTNTGISKGYAFCEYLDPDVTDQACAS 50011 Query: 65 ING 67 +NG Sbjct: 50010 LNG 50002 Score = 29.3 bits (64), Expect = 3.5 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 8/73 (10%) Frame = -3 Query: 90 PDNSPEYSLFVGDLTPDVDDGMLYEFF--------VKVYPSCRGGKVVLDQTGVSKGYGF 141 P ++VG++ P + D L EFF + V P G VV Q K + F Sbjct: 50535 PQKKQSRRIYVGNIPPGITDSELIEFFNAAVLAANLNVKP---GPPVVFCQINAPKCFAF 50365 Query: 142 VKFTDELEQKRAL 154 ++F E A+ Sbjct: 50364 IEFRTPEEATNAM 50326 >scaffold_189 Length = 60488 Score = 32.0 bits (71), Expect = 0.55 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Frame = -2 Query: 116 FVKVYPSCRGGKVVLDQT-GVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI 174 F+K+Y + +V D+T G SKGY FV + E L +G++ + V LS Sbjct: 58456 FIKIYGAYESIEVRYDRTTGDSKGYAFVNYKTIDEATEILKLTEGSINIDGHGVLLSYGH 58277 Query: 175 P 175 P Sbjct: 58276 P 58274 >scaffold_142 Length = 71084 Score = 32.0 bits (71), Expect = 0.55 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 3/83 (3%) Frame = -3 Query: 77 KRFKLNYATYGKQPDNS---PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQT 133 K F +N K DN E LF+G L D+ + + F + VV ++ Sbjct: 25569 KYF*MNKPLQVKYSDNEIEKMERKLFIGMLGT-ADEDQVRQIFGN-FGIIEELTVVREKD 25396 Query: 134 GVSKGYGFVKFTDELEQKRALTE 156 G KGYGF+KF+ E + AL E Sbjct: 25395 GKPKGYGFIKFSTRDESENALRE 25327 >scaffold_556 Length = 14829 Score = 31.2 bits (69), Expect = 0.93 Identities = 20/59 (33%), Positives = 27/59 (45%) Frame = +1 Query: 98 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 156 +FVG+L L E F K P +TG SKGY FV+F ++ + A E Sbjct: 4642 IFVGNLPYHFQKPNLEELFGKFGPLVNINVGFDKRTGQSKGYAFVEFENKADADAAFNE 4818 >scaffold_378 Length = 32263 Score = 31.2 bits (69), Expect = 0.93 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Frame = +1 Query: 102 DLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAV 161 D+ V D L E F K+ V +G +KGYGFVKF + + + A+ V Sbjct: 11647 DIARGVTDEQLKEEFSKIGDVVEAVVVKNKHSGETKGYGFVKFYNYSDAQHAIETSSPPV 11826 Query: 162 ---GLGSKP 167 G+ KP Sbjct: 11827 FKDGVTGKP 11853 >scaffold_762 Length = 4941 Score = 30.8 bits (68), Expect = 1.2 Identities = 16/49 (32%), Positives = 29/49 (59%) Frame = -3 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEF 52 S+++G+++ + I F + G TV + I+ ++ TG P G C+VEF Sbjct: 2536 SIYVGNVDYKSTHDQILAYFQSCG-TVNRITILSDKTTGHPKGCCYVEF 2393 >scaffold_279 Length = 44304 Score = 28.9 bits (63), Expect = 4.6 Identities = 18/73 (24%), Positives = 33/73 (45%) Frame = -1 Query: 93 SPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKR 152 +P L++G + +++ LY+ F+K GKV Y F+KF D + Sbjct: 32295 APSEILWIGRIGSNINYEKLYQLFIKF------GKVDYLHMVNDSNYAFIKFLDVKDAIN 32134 Query: 153 ALTECQGAVGLGS 165 A + G++ G+ Sbjct: 32133 AKLKLNGSLKFGA 32095 >scaffold_112 Length = 77519 Score = 28.9 bits (63), Expect = 4.6 Identities = 43/183 (23%), Positives = 67/183 (36%), Gaps = 25/183 (13%) Frame = +2 Query: 23 FATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLN 82 F+ G S+ I + G+ FV FAD + + L KR ++ Sbjct: 66665 FSEFGVVKESIVIKATEKSNKSRGFGFVTFADPTVIDSIFY------LEHLIEGKRVEIR 66826 Query: 83 YATYGKQPDNSPE-YSLFVGDLTPDVDDG---------------MLYEFFV-----KVYP 121 A + P+ LFVG L G +++ FF K Y Sbjct: 66827 KAIPKEDMIEEPKKQKLFVGGLPKHTTPGKF*NYLIKKKQTI*ILIHNFFFFIDDFKSYF 67006 Query: 122 SCRGG----KVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKA 177 S G ++ ++ G KG+GFV F DE + L E +G K V + +A + Sbjct: 67007 SDYGEVLEYNLLTEKNGSVKGFGFVCFKDENINETVLNETHFILG---KRVDVRIADSQN 67177 Query: 178 SRV 180 R+ Sbjct: 67178 KRI 67186 >scaffold_55 Length = 109839 Score = 28.9 bits (63), Expect = 4.6 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = -2 Query: 88 KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKF-TD 146 K+P N P + + +L + + L E F K Y + +VLD+ G SKG F+ F T Sbjct: 84080 KEP-NLPN-KIIIFNLPFETSERELKELFDK-YGDIKHTALVLDRNGKSKGLAFITFATH 83910 Query: 147 ELEQK 151 E+ QK Sbjct: 83909 EMAQK 83895 >scaffold_28 Length = 138179 Score = 28.9 bits (63), Expect = 4.6 Identities = 18/68 (26%), Positives = 36/68 (52%) Frame = +2 Query: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 64 +++G+L + E+ I +AF+ G TV S+ ++ G GY F+E+ +A K + Sbjct: 40883 VYIGNLHFSLAEDAIIQAFSQFG-TVKSI-LLGKDANGKSKGYAFIEYESPDSATKAIES 41056 Query: 65 INGKPLPG 72 ++ + G Sbjct: 41057 MSNYVMAG 41080 >scaffold_215 Length = 53335 Score = 28.1 bits (61), Expect = 7.9 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -1 Query: 80 KLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFV 117 K+ + G D + LFVG + P + G+L FFV Sbjct: 12016 KVTFLASGLSTDGEMDAVLFVGPIAPQTNLGLLGSFFV 11903 >scaffold_94 Length = 83882 Score = 28.1 bits (61), Expect = 7.9 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = -2 Query: 136 SKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 173 S GYGFVKFT + A+ + G + S+P+++S A Sbjct: 2716 SLGYGFVKFTKREDAFIAVEQMNG-FEIDSRPIKVSYA 2606 Database: genome.fa Posted date: Jan 16, 2009 12:50 PM Number of letters in database: 32,967,507 Number of sequences in database: 799 Lambda K H 0.317 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,907,883 Number of Sequences: 799 Number of extensions: 78230 Number of successful extensions: 256 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 199 Number of HSP's gapped (non-prelim): 74 length of query: 287 length of database: 10,989,169 effective HSP length: 99 effective length of query: 188 effective length of database: 10,910,068 effective search space: 2051092784 effective search space used: 2051092784 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (27.7 bits)