TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|224465209|ref|NP_699167.2| L-seryl-tRNA(Sec) kinase [Homo sapiens] (348 letters) Database: genome.fa 9 sequences; 8,347,606 total letters Searching.........done Score E Sequences producing significant alignments: (bits) Value gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ct... 30 0.72 gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 ch... 28 2.7 gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 ch... 27 6.1 gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ct... 27 8.0 >gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ctg_529, whole genome shotgun sequence Length = 1835834 Score = 30.0 bits (66), Expect = 0.72 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 12/85 (14%) Frame = -1 Query: 132 QSCYLLTKTAVSRPLFLVLDDNFYYQSM---------RYEVYQLARKYSLGFCQLFLDCP 182 Q+ YLL ++RPL L + NF Y ++ Y ++ + R + +C L + Sbjct: 1724063 QTYYLLELCPLNRPLLLGIRQNFCYLNLLF*GCFPPKSYSLFPVGRA*TFQYCHLNISYT 1723884 Query: 183 LE---TCLQRNGQRPQALPPETIHL 204 + T +N QR + P T+ + Sbjct: 1723883 SD*TCTMTHQNPQRLEIYPNPTLQM 1723809 >gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 chr1_complete, whole genome shotgun sequence Length = 2540030 Score = 28.1 bits (61), Expect = 2.7 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 5/83 (6%) Frame = -1 Query: 197 LPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVTDLLLTALENPVKYAED 256 LPPE + E P P+ +A + P P E + E +D E+ K A D Sbjct: 982145 LPPEPPKVTP---ETPTPQPDATSQPDTSTPKPETPVEPTPETSDSTQKPSED-AKQASD 981978 Query: 257 NMEQKDTDRI-----ICSTNILH 274 E + D+ + +TNILH Sbjct: 981977 TPEPQPEDKTEKHPEL*TTNILH 981909 Score = 27.7 bits (60), Expect = 3.6 Identities = 14/50 (28%), Positives = 26/50 (52%) Frame = +1 Query: 112 EDFITCLKDQDLIFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRY 161 E F++C+++QDL AQ + K +S PL + +Y S+++ Sbjct: 2398738 EGFVSCVREQDLPTLREVMAQEVTQIEKAVISPPLDTI---GAFYSSLKH 2398878 >gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 chr2_complete, whole genome shotgun sequence Length = 1971884 Score = 26.9 bits (58), Expect = 6.1 Identities = 12/31 (38%), Positives = 13/31 (41%) Frame = -2 Query: 161 YEVYQLARKYSLGFCQLFLDCPLETCLQRNG 191 Y YQ Y L CQ C + CLQ G Sbjct: 267913 YSFYQNLPNYLLSLCQFLSSCLI*QCLQGTG 267821 >gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ctg_531, whole genome shotgun sequence Length = 570487 Score = 26.6 bits (57), Expect = 8.0 Identities = 11/35 (31%), Positives = 20/35 (57%) Frame = +3 Query: 144 RPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLF 178 RP +++ YY+ ++Y +Y +R+ FC LF Sbjct: 213189 RPHSSIINIYNYYRQIKYWLYS*SRRKDFTFCTLF 213293 Database: genome.fa Posted date: Jan 19, 2010 5:27 PM Number of letters in database: 8,347,606 Number of sequences in database: 9 Lambda K H 0.321 0.134 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,234,540 Number of Sequences: 9 Number of extensions: 45947 Number of successful extensions: 183 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 143 Number of HSP's gapped (non-prelim): 100 length of query: 348 length of database: 2,782,535 effective HSP length: 92 effective length of query: 256 effective length of database: 2,781,707 effective search space: 712116992 effective search space used: 712116992 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (26.2 bits)