TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|224465209|ref|NP_699167.2| L-seryl-tRNA(Sec) kinase [Homo
sapiens]
         (348 letters)

Database: genome.fa 
           32,746 sequences; 89,612,356 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAHK01000470.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    38   0.031
gb|AAHK01000442.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    37   0.040
gb|AAHK01001005.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    31   3.8  
gb|AAHK01000015.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    31   3.8  
gb|AAHK01001244.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    30   4.9  
gb|AAHK01018072.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    30   6.4  
gb|AAHK01000840.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    30   6.4  
gb|AAHK01001929.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    30   6.4  

>gb|AAHK01000470.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053504137, whole genome
             shotgun sequence
          Length = 33961

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 51/215 (23%), Positives = 78/215 (36%), Gaps = 69/215 (32%)
 Frame = +3

Query: 147   FLVLDDNFYYQSMRYEVYQLARKYS---------------------------LGFCQLFL 179
             F+ L D   Y+SMR   ++L R                              +   ++ L
Sbjct: 25356 FVFLVDTLPYRSMRASYWKLCRDLGKEQFQHNLERDEVMNKCDGRVPLDAVFVNMVEIRL 25535

Query: 180   DCPLETCLQRNGQR---PQALPPETIHLMGRKLE-------KPNPEKNAW---------- 219
             + P+E CL+RN +R   PQ +PP  I  MG   +       K + + N W          
Sbjct: 25536 NTPIEICLERNERRSETPQYIPPHVIKSMGDSFDVGVDTSAKFSADDNCWVVSPRQASTP 25715

Query: 220   --------EHNSLTIPSPACA---------SEASLEVTDLLLTALENPVKYAE----DNM 258
                        +  +P  A A         SE   E+     +  E  VK  E    D+ 
Sbjct: 25716 WPVIWLEDVETNCCLPPAALAQKLLERIHSSEVMGELEKQSASFFEAEVKRRERERCDHD 25895

Query: 259   EQKDTDRIICS-TNILHKTDQTLRRIVSQTMKEAK 292
             + ++ D    S ++ LH+ D  LR +V Q MKE K
Sbjct: 25896 QPQEGDAAKASRSDWLHQVDLRLRAVVQQYMKEFK 26000


>gb|AAHK01000442.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053509799, whole genome
             shotgun sequence
          Length = 35447

 Score = 37.4 bits (85), Expect = 0.040
 Identities = 48/217 (22%), Positives = 78/217 (35%), Gaps = 71/217 (32%)
 Frame = +2

Query: 147   FLVLDDNFYYQSMRYEVYQLARKYS---------------------------LGFCQLFL 179
             F+ L D   Y+SMR   ++L R                              +   ++ L
Sbjct: 17102 FVFLVDTLPYRSMRASYWKLCRDLGKEQFQHKLERDGVMNKCDGRVPFDAVFVNMVEIRL 17281

Query: 180   DCPLETCLQRNGQR---PQALPPETIHLMGRKLE-------KPNPEKNAWEHNSLTIPSP 229
             + P+E CL+RN +R   PQ +PP  I  MG   +       K + + N W  +     +P
Sbjct: 17282 NTPIEICLERNERRTETPQYVPPHVIKNMGGSFDVGVDTSAKFSADDNCWVVSPRQASTP 17461

Query: 230   ------------ACASEASLEVTDLLLTALENP----------VKYAEDNMEQKDTDRI- 266
                          C   A+L     LL  L +P            + E  +++++ +R  
Sbjct: 17462 WPVIWLEEVKTNCCLPPAAL--AQKLLERLHSPEVMGELEKQSASFFEAEVKRRERERCD 17635

Query: 267   -----------ICSTNILHKTDQTLRRIVSQTMKEAK 292
                           ++ LH+ D  LR +V Q MKE K
Sbjct: 17636 HDQPQEGDAAKASRSDWLHQVDLRLRAVVQQYMKEFK 17746


>gb|AAHK01001005.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053510835, whole genome
             shotgun sequence
          Length = 19174

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 129   FEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGF 174
             F   +C+LL  + +  PLFL  +DN YY S  Y  +       + F
Sbjct: 12529 FSPTNCHLL*LSPLHPPLFLYNNDNIYYYSYYYYYFSFLCSIDIPF 12392


>gb|AAHK01000015.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053504081, whole genome
             shotgun sequence
          Length = 122583

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 305   QRWVRANHAAIWRIILGNEHIKCRSAKVGWLQCCRIEKRPLST 347
             +RW+       W         +CR+ K G  QCC + KRP ST
Sbjct: 22121 RRWMTMRRMYSW---------ECRTTKKGSGQCCAVAKRPRST 22020


>gb|AAHK01001244.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053503533, whole genome
             shotgun sequence
          Length = 15075

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -2

Query: 188   QRNGQRPQALPPETIHLMGRKLEKPN-PEKNAWEHNSLTIPSPACASEASLEVTDLLLTA 246
             ++N Q  Q    ET H   R +   N P    WE  SL +P PA    +   +  ++ TA
Sbjct: 11630 RQNTQEAQPRVLETDHERLRFIHCRNAPVVGNWECESLGVPQPARRHVSDGMLATIVRTA 11451

Query: 247   LENPVKYAEDNMEQKDTDRIIC 268
             +    +Y  ++++QK  ++++C
Sbjct: 11450 IVLLTRYC-NSIQQKQDNKLLC 11388


>gb|AAHK01018072.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053457663, whole
           genome shotgun sequence
          Length = 942

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +2

Query: 188 QRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVTDLLLTAL 247
           Q N Q P A+PP+T+ L       P  +     H+S   P+ +C    + + T L ++ +
Sbjct: 266 QSNNQNPLAIPPDTLFL------APTHQNPPQHHDSPVWPATSCHGCTTDQRTVLSVSFI 427

Query: 248 ENPVK 252
             P+K
Sbjct: 428 LAPIK 442


>gb|AAHK01000840.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053509171, whole genome
             shotgun sequence
          Length = 22316

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 30/106 (28%), Positives = 42/106 (39%)
 Frame = -2

Query: 155   YYQSMRYEVYQLARKYSLGFCQLFLDCPLETCLQRNGQRPQALPPETIHLMGRKLEKPNP 214
             Y+  +  E   + +++S  FC LF DC  E C Q    R      +    MG +     P
Sbjct: 17686 YFFLLGTEPSPVNKRFSFFFCHLFSDC--EICPQTTVTR*FLWCHK*ARNMGSRRRAKRP 17513

Query: 215   EKNAWEHNSLTIPSPACASEASLEVTDLLLTALENPVKYAEDNMEQ 260
                A E     +   A   EA  E T L     E+P   +E N+EQ
Sbjct: 17512 SSAATEVAEKKVDEEANTKEA--ETTTLSPKVSEHPA--SESNVEQ 17387


>gb|AAHK01001929.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053507075, whole genome
            shotgun sequence
          Length = 8476

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = -2

Query: 188  QRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVTDLLLTAL 247
            Q N Q P A+PP+T+ L       P  +     H+S   P+ +C    + + T L ++ +
Sbjct: 4818 QSNNQNPLAIPPDTLFL------APTHQNPPQHHDSPVWPATSCHGCTTDQRTVLSVSFI 4657

Query: 248  ENPVK 252
              P+K
Sbjct: 4656 LAPIK 4642


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:13 PM
  Number of letters in database: 89,612,356
  Number of sequences in database:  32,746
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,513,314
Number of Sequences: 32746
Number of extensions: 888953
Number of successful extensions: 5349
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5349
length of query: 348
length of database: 29,870,785
effective HSP length: 107
effective length of query: 241
effective length of database: 26,366,963
effective search space: 6354438083
effective search space used: 6354438083
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)