TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|224465209|ref|NP_699167.2| L-seryl-tRNA(Sec) kinase [Homo sapiens] (348 letters) Database: genome.fa 5578 sequences; 78,051,097 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAQY01000241.1| Phytophthora sojae strain P6497 Psojae_Cont24... 39 4e-07 gb|AAQY01000877.1| Phytophthora sojae strain P6497 Psojae_Cont87... 36 0.11 gb|AAQY01000392.1| Phytophthora sojae strain P6497 Psojae_Cont39... 33 0.73 gb|AAQY01001663.1| Phytophthora sojae strain P6497 Psojae_Cont16... 32 1.6 gb|AAQY01000886.1| Phytophthora sojae strain P6497 Psojae_Cont88... 32 1.6 gb|AAQY01001428.1| Phytophthora sojae strain P6497 Psojae_Cont14... 32 2.1 gb|AAQY01000689.1| Phytophthora sojae strain P6497 Psojae_Cont68... 31 2.8 gb|AAQY01001066.1| Phytophthora sojae strain P6497 Psojae_Cont10... 30 6.2 gb|AAQY01000089.1| Phytophthora sojae strain P6497 Psojae_Cont89... 30 6.2 gb|AAQY01002260.1| Phytophthora sojae strain P6497 Psojae_Cont22... 30 8.1 gb|AAQY01001714.1| Phytophthora sojae strain P6497 Psojae_Cont17... 30 8.1 gb|AAQY01001518.1| Phytophthora sojae strain P6497 Psojae_Cont15... 30 8.1 gb|AAQY01001376.1| Phytophthora sojae strain P6497 Psojae_Cont13... 30 8.1 gb|AAQY01001201.1| Phytophthora sojae strain P6497 Psojae_Cont12... 30 8.1 gb|AAQY01000573.1| Phytophthora sojae strain P6497 Psojae_Cont57... 30 8.1 >gb|AAQY01000241.1| Phytophthora sojae strain P6497 Psojae_Cont241, whole genome shotgun sequence Length = 455163 Score = 38.9 bits (89), Expect(2) = 4e-07 Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 6/154 (3%) Frame = -2 Query: 20 LCVLCGLPAAGKSTFARAL------AHRLQQEQGWAIGVVAYDDVMPDAFLAGARARPAP 73 L ++CGLPAAGK+T + L A RL + +++DD+ A P Sbjct: 192035 LVLVCGLPAAGKTTLVKRLVNNGSTASRLYER-------ISFDDIYEHAAANDEDREFDP 191877 Query: 74 SQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLIFSAAFEAQS 133 +WK +Q ++ L + E QS Sbjct: 191876 DKWKASQQAMV--------------------------------------LRVTERLEQQS 191811 Query: 134 CYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLA 167 K ++ L L++DDNF Y+S+R +QLA Sbjct: 191810 ATTREK-ETTQQLVLLVDDNFQYRSLRKRFFQLA 191712 Score = 34.3 bits (77), Expect(2) = 4e-07 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 6/82 (7%) Frame = -3 Query: 173 GFCQLFLDCPLETCLQR------NGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTI 226 GF L ++ E C +R NG +P E M E PN ++N WE ++ + Sbjct: 191623 GFAVLHVNVETELCRERNNSRGINGNEGARVPDEVFRRMAAAFEAPNGDQNPWEVSTCEL 191444 Query: 227 PSPACASEASLEVTDLLLTALE 248 + A ++ ++ D L+ E Sbjct: 191443 -NDAVENDGIEDIMDTLIKRAE 191381 >gb|AAQY01000877.1| Phytophthora sojae strain P6497 Psojae_Cont877, whole genome shotgun sequence Length = 43290 Score = 35.8 bits (81), Expect = 0.11 Identities = 16/26 (61%), Positives = 20/26 (76%) Frame = -2 Query: 20 LCVLCGLPAAGKSTFARALAHRLQQE 45 L V+CG+PAAGKST A AL LQ++ Sbjct: 20975 LVVVCGIPAAGKSTVATALVDHLQRQ 20898 Score = 35.4 bits (80), Expect = 0.15 Identities = 20/81 (24%), Positives = 40/81 (49%) Frame = -2 Query: 175 CQLFLDCPLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASE 234 C +++D P+E LQRN R + + + + + + E P EKN W+ + + Sbjct: 20510 C*VYVDTPVEVALQRNAAREERIDSKLLEELAARFEAP-VEKNRWDSPLFRL----TPED 20346 Query: 235 ASLEVTDLLLTALENPVKYAE 255 S + T + L A+ + V++ + Sbjct: 20345 FSADGTGVPLDAITDAVRFGK 20283 >gb|AAQY01000392.1| Phytophthora sojae strain P6497 Psojae_Cont392, whole genome shotgun sequence Length = 94685 Score = 33.1 bits (74), Expect = 0.73 Identities = 14/22 (63%), Positives = 17/22 (77%) Frame = -1 Query: 20 LCVLCGLPAAGKSTFARALAHR 41 L VLCG+P +GKS+F RAL R Sbjct: 78155 LLVLCGIPGSGKSSFRRALVKR 78090 >gb|AAQY01001663.1| Phytophthora sojae strain P6497 Psojae_Cont1663, whole genome shotgun sequence Length = 168583 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Frame = -3 Query: 181 CPLETCLQRNGQRPQALPPETIH-LMGRKLEKPNPEKNAWEHNSLTIPSP 229 C L L G+R + P +H L GRK KP K + +NS+ P P Sbjct: 21698 CRLSAALLLLGERLEFEVPAMLHFLFGRKERKPKKSKKSSSNNSMQSPEP 21549 >gb|AAQY01000886.1| Phytophthora sojae strain P6497 Psojae_Cont886, whole genome shotgun sequence Length = 74830 Score = 32.0 bits (71), Expect = 1.6 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%) Frame = +2 Query: 12 SDGPRKRGLCVLCGLPAAGKSTFARALAHRL-----QQEQGWAIGVVAYDDVMPDAF 63 S G ++ L LCG P +GKST R +A +L + E A G + Y+ + D F Sbjct: 11798 SAGVFQKRLLFLCGPPGSGKSTAVRCVARKLGLLVKEWEDNSAAGKLNYERKLRDDF 11968 >gb|AAQY01001428.1| Phytophthora sojae strain P6497 Psojae_Cont1428, whole genome shotgun sequence Length = 89732 Score = 31.6 bits (70), Expect = 2.1 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 1/136 (0%) Frame = -2 Query: 213 NPEKNAWEHNSLTIPSPACASEASLEVTDLLLTALENPVKYAE-DNMEQKDTDRIICSTN 271 NP NA S T+P+ AC + + ++ +K + +N + D ++ Sbjct: 83923 NPNYNAESATSSTLPTSACGRPTKTQSR**TTSTVKFQLKKQKFENYGKLDLHKMTKMYK 83744 Query: 272 ILHKTDQTLRRIVSQTMKEAKGNQEAFSEMTFKQRWVRANHAAIWRIILGNEHIKCRSAK 331 I T + ++ Q S T R R WRI+L +K S Sbjct: 83743 ITKMTRMAKKTKMNLASPNPTARQSRTSSGTRAARAARTRTCRKWRIVLPRTMLKETSTT 83564 Query: 332 VGWLQCCRIEKRPLST 347 + + ++KRP +T Sbjct: 83563 LKKRKMAAMKKRPTAT 83516 >gb|AAQY01000689.1| Phytophthora sojae strain P6497 Psojae_Cont689, whole genome shotgun sequence Length = 111111 Score = 31.2 bits (69), Expect = 2.8 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = +2 Query: 295 QEAFSEMTFKQRWVRANHAAIWRIILGNEHIKCRSAKVGWLQCCRI 340 Q + +++ +Q R + + R N+ CRS+ +GWL C R+ Sbjct: 75398 QHSVAKLIVRQPKTRQHDTDVVRTFRVNQRNSCRSSSLGWLLCLRL 75535 >gb|AAQY01001066.1| Phytophthora sojae strain P6497 Psojae_Cont1066, whole genome shotgun sequence Length = 132519 Score = 30.0 bits (66), Expect = 6.2 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +3 Query: 10 TGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQE 45 TG + + VL GLP GKSTF LA ++E Sbjct: 78729 TGGTWGHDKCMVVLRGLPGCGKSTFGDILAREFREE 78836 >gb|AAQY01000089.1| Phytophthora sojae strain P6497 Psojae_Cont89, whole genome shotgun sequence Length = 96702 Score = 30.0 bits (66), Expect = 6.2 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Frame = +3 Query: 240 TDLLLTALENPVKYAEDNMEQKDTDRIICSTNI--LHKTDQTLRRIVSQTMKEAKGNQEA 297 T LL A+ PV+ + E D I+C + +H L RI + A GN A Sbjct: 39297 THTLLLAVSVPVQRKQTTHE---IDVILCDD*VERVHANFVRLLRIQHHVSQAAHGNTGA 39467 Query: 298 FSEMTFKQRWVR 309 +++ KQRW R Sbjct: 39468 ATQLDTKQRWWR 39503 >gb|AAQY01002260.1| Phytophthora sojae strain P6497 Psojae_Cont2260, whole genome shotgun sequence Length = 28869 Score = 29.6 bits (65), Expect = 8.1 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = +2 Query: 27 PAAGKSTFARALAHRLQQEQGWAIG 51 P AGKSTF +ALA +LQ + IG Sbjct: 2798 PGAGKSTFLKALAGKLQDNKQTEIG 2872 >gb|AAQY01001714.1| Phytophthora sojae strain P6497 Psojae_Cont1714, whole genome shotgun sequence Length = 145323 Score = 29.6 bits (65), Expect = 8.1 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = +1 Query: 27 PAAGKSTFARALAHRLQQEQGWAIG 51 P AGKSTF +ALA +LQ+ IG Sbjct: 144460 PGAGKSTFLKALAGKLQRNSKTEIG 144534 >gb|AAQY01001518.1| Phytophthora sojae strain P6497 Psojae_Cont1518, whole genome shotgun sequence Length = 59911 Score = 29.6 bits (65), Expect = 8.1 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Frame = +3 Query: 207 RKLEKPNPEKNAWEHNS---LTIPSPACASEASLEVTDLLLTALENPVKYAEDNMEQKDT 263 RK E P+ NA HNS LT+PSP+CA +E T+LLL + V A + ++ Sbjct: 39630 RKQE*PS-SVNAQVHNSFPLLTLPSPSCA*PCRIE-TELLLA--QCTVAAATPPTTRTNS 39797 Query: 264 DRIICSTNILHKTDQTL 280 + CS H + + L Sbjct: 39798 TPVCCSAASPHLSPRPL 39848 >gb|AAQY01001376.1| Phytophthora sojae strain P6497 Psojae_Cont1376, whole genome shotgun sequence Length = 350951 Score = 29.6 bits (65), Expect = 8.1 Identities = 16/46 (34%), Positives = 26/46 (56%) Frame = -1 Query: 11 GSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYD 56 G+ PRK + +L G+P +GKST R + + +E+G A + D Sbjct: 216419 GNKDPRKPVVVILRGIPGSGKSTLGREIG-AICRERGAAFTACSAD 216285 >gb|AAQY01001201.1| Phytophthora sojae strain P6497 Psojae_Cont1201, whole genome shotgun sequence Length = 152912 Score = 29.6 bits (65), Expect = 8.1 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Frame = -3 Query: 10 TGSDGPRKRGLCVLCGLPAAGKSTFARALAH-RLQQEQGWA--IGVVAYDDVMPDAFLAG 66 TG D PR LCG P A +T L + RL+ WA +G++ A+ Sbjct: 127674 TGQDSPRLGSCVELCGAPIAHPTTDQLLLTYQRLRLAVCWAGLLGLIQPKSWTTTAWCRF 127495 Query: 67 ARARPAP 73 R RP P Sbjct: 127494 LRRRPRP 127474 >gb|AAQY01000573.1| Phytophthora sojae strain P6497 Psojae_Cont573, whole genome shotgun sequence Length = 227239 Score = 29.6 bits (65), Expect = 8.1 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 10/54 (18%) Frame = +3 Query: 209 LEKPNPEKNA--------WEHNSLTIPSPA--CASEASLEVTDLLLTALENPVK 252 L +P+P+ +A W S + P A AS ASL V LLL+ALE PV+ Sbjct: 100221 LRRPSPQLDAIPYDIDT*WSALSDSHPKQARTFASCASLHVNSLLLSALETPVR 100382 Database: genome.fa Posted date: Jan 19, 2010 5:09 PM Number of letters in database: 78,051,097 Number of sequences in database: 5578 Lambda K H 0.321 0.134 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,535,330 Number of Sequences: 5578 Number of extensions: 718893 Number of successful extensions: 4162 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 653 Number of HSP's successfully gapped in prelim test: 208 Number of HSP's that attempted gapping in prelim test: 2713 Number of HSP's gapped (non-prelim): 2503 length of query: 348 length of database: 26,017,032 effective HSP length: 107 effective length of query: 241 effective length of database: 25,420,186 effective search space: 6126264826 effective search space used: 6126264826 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 64 (29.3 bits)