TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|224465209|ref|NP_699167.2| L-seryl-tRNA(Sec) kinase [Homo sapiens] (348 letters) Database: genome.fa 218 sequences; 41,633,360 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_2 35 0.14 scaffold_14 30 2.6 scaffold_24 30 4.5 scaffold_89 29 5.9 scaffold_35 29 5.9 scaffold_30 29 5.9 scaffold_12 29 5.9 scaffold_5 29 5.9 >scaffold_2 Length = 3607471 Score = 34.7 bits (78), Expect = 0.14 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = +3 Query: 173 GFCQLFLDCPLETCLQRNGQRPQA--LPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPA 230 G C L LD L+ CL RN QR + + TI M + + P E WE T A Sbjct: 2296161 GLCFLRLDTSLDECLHRNAQRTGSARIADATIRAMAARADWPGRE--PWERFCFTWTDSA 2296334 Query: 231 CASEA 235 ++EA Sbjct: 2296335 LSTEA 2296349 Score = 34.3 bits (77), Expect = 0.18 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Frame = +1 Query: 132 QSCYLL----TKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPLETCL 187 Q C+L T S P ++LDD F+ SMR E + LA++ LG L + L Sbjct: 2295949 QVCFLTLSPWTTLHSSAPSLVLLDDTFHMASMRKEAFHLAQQRELGCAIASLASCVRVSL 2296128 Query: 188 QRNGQRPQALP 198 Q G Q P Sbjct: 2296129 QGVGAPVQTRP 2296161 Score = 32.3 bits (72), Expect = 0.69 Identities = 19/50 (38%), Positives = 26/50 (52%) Frame = +2 Query: 20 LCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMPDAFLAGARA 69 L VLCGLP +GK+T +RA+ + V YDD +L G +A Sbjct: 2295701 LVVLCGLPGSGKTTLSRAVLAAAGGAHEQQVFHVRYDD-----YLVGVQA 2295835 Score = 31.2 bits (69), Expect = 1.5 Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 14/111 (12%) Frame = -2 Query: 191 GQRPQALPPETI------HLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVTDLLL 244 G+R +A E + HL+ K +KPN E NS PAC+ + +++ T L Sbjct: 1179477 GRRQRASHAELVGLGALPHLLEAKSQKPNAHDEEEEGNSKDDACPACSRQEAIQKTGKLA 1179298 Query: 245 TALENPVKYAEDNMEQKDTDRIICSTNIL--------HKTDQTLRRIVSQT 287 + ++ ++ + + + + N + +T RR V +T Sbjct: 1179297 ETAQKRREWERAQAQKMKSSQHVLNNNDFFFFFGF*RERETETERRFVGET 1179145 Score = 30.4 bits (67), Expect = 2.6 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = +3 Query: 22 VLCGLPAAGKSTFARALAHRLQ 43 ++CG PAAG +T AR LA +LQ Sbjct: 2511609 IVCGPPAAGCTTLARQLAEKLQ 2511674 >scaffold_14 Length = 1073601 Score = 30.4 bits (67), Expect = 2.6 Identities = 23/72 (31%), Positives = 28/72 (38%) Frame = -3 Query: 173 GFCQLFLDCPLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACA 232 G C L L CPL+ L G AL PE + GR NP S P P+ Sbjct: 732256 GGCALLLSCPLDWLLDPPG---SALRPELFDVAGRPSAPANP--------SAGCPCPSVR 732110 Query: 233 SEASLEVTDLLL 244 + L D+ L Sbjct: 732109 APTRLRTDDVPL 732074 >scaffold_24 Length = 679602 Score = 29.6 bits (65), Expect = 4.5 Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 11/92 (11%) Frame = +3 Query: 127 AAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCP--LE 184 A EA+S TK ++ L L + V Q + +L F QL+LDCP E Sbjct: 170346 AGREARSG*RKTKETQNKALLLKHRRTTSARLFHARVLQSRQGRTLRFAQLYLDCPNQRE 170525 Query: 185 TCLQRNGQRPQALPPET---------IHLMGR 207 C R P LP E HL GR Sbjct: 170526 PCWSREFASPLHLPLEVA*RRARHQGYHLTGR 170621 >scaffold_89 Length = 9421 Score = 29.3 bits (64), Expect = 5.9 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Frame = +1 Query: 163 VYQLARKYSLGFCQLFLDCP--LETCLQRNGQRPQALP 198 V Q + ++L F QL+LDCP E C R P LP Sbjct: 2176 VLQTRQGWTLRFAQLYLDCPNQREPCWSREFASPLHLP 2289 >scaffold_35 Length = 432256 Score = 29.3 bits (64), Expect = 5.9 Identities = 18/78 (23%), Positives = 31/78 (39%) Frame = -3 Query: 151 DDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPLETCLQRNGQRPQALPPETIHLMGRKLE 210 D F++ + YE R C L PL++C + LPP +G ++ Sbjct: 281774 DKVFFHVRITYEEPVGPRGVDRLVCCLVSMLPLDSCRLGDNSHLPMLPPSLCRCIG*RIR 281595 Query: 211 KPNPEKNAWEHNSLTIPS 228 +W H++ T P+ Sbjct: 281594 NAFAPSQSWWHSTWTNPT 281541 >scaffold_30 Length = 568742 Score = 29.3 bits (64), Expect = 5.9 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Frame = -2 Query: 163 VYQLARKYSLGFCQLFLDCP--LETCLQRNGQRPQALP 198 V Q + ++L F QL+LDCP E C R P LP Sbjct: 287803 VLQTRQGWTLRFAQLYLDCPNQREPCWSREFASPLHLP 287690 >scaffold_12 Length = 1128436 Score = 29.3 bits (64), Expect = 5.9 Identities = 27/125 (21%), Positives = 49/125 (39%) Frame = -1 Query: 21 CVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMPDAFLAGARARPAPSQWKLLR 80 CV A +ST + +L R ++EQ + A A RA P+ S+W+ + Sbjct: 178003 CVSLAKARASESTLSHSLVWRSKEEQS----------PLSLACNAEPRAVPSSSKWRSIS 177854 Query: 81 QELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLIFSAAFEAQSCYLLTKT 140 ++ + ++ + R W T D L+ + A E SC+ ++ Sbjct: 177853 RDCCRR-----SVALSLSTERLAE*RFSFTWTCCETLTSDSLLLCNTAVEVASCWFTSRH 177689 Query: 141 AVSRP 145 +RP Sbjct: 177688 CTARP 177674 >scaffold_5 Length = 1613056 Score = 29.3 bits (64), Expect = 5.9 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Frame = +1 Query: 215 EKNAWEHNSLTIP-----SPACASEASLEVTDLLLTALENPVKYAEDNMEQKDTDR 265 E++ W+H +L P + A + V LLL ALEN + E + QK DR Sbjct: 1136920 EQSDWKHYALATPMYTHFTSPIRRYADVVVHRLLLAALENKETFYEHDKVQKAADR 1137087 Database: genome.fa Posted date: Jan 19, 2010 5:06 PM Number of letters in database: 41,633,360 Number of sequences in database: 218 Lambda K H 0.321 0.134 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,092,605 Number of Sequences: 218 Number of extensions: 433628 Number of successful extensions: 2493 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 34 Number of HSP's that attempted gapping in prelim test: 1845 Number of HSP's gapped (non-prelim): 1509 length of query: 348 length of database: 13,877,786 effective HSP length: 103 effective length of query: 245 effective length of database: 13,855,332 effective search space: 3394556340 effective search space used: 3394556340 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 62 (28.5 bits)