TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|224465209|ref|NP_699167.2| L-seryl-tRNA(Sec) kinase [Homo
sapiens]
         (348 letters)

Database: genome.fa 
           1696 sequences; 31,706,682 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mex450b23.q1k                                                          37   0.028
mex202a13.p1k                                                          34   0.18 
mex581h23.p1k                                                          31   1.2  
1036_mexFOS1_25n05.q1kpIBR                                             30   2.0  
1036_mexFOS1_22i20.q1kpIBR                                             29   4.4  
1036_mexFOS1_31e06.q1kpIBR                                             29   5.8  
mex380f18.p1k                                                          28   7.6  
mex295n15.q1k                                                          28   9.9  
mex306a14.p1k                                                          28   9.9  
mex380g23.q1k                                                          28   9.9  
mex337e02.p1k                                                          28   9.9  
mex387e02.p1k                                                          28   9.9  
mex215m13.p1k                                                          28   9.9  
mex186e16.q1k                                                          28   9.9  

>mex450b23.q1k 
          Length = 8702

 Score = 36.6 bits (83), Expect = 0.028
 Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
 Frame = -1

Query: 18   RGLC-----VLCGLPAAGKSTFARALAHRLQQEQG 47
            RG C     VLCGLP AGKST A AL+  L  ++G
Sbjct: 3632 RGRCPLTVVVLCGLPGAGKSTLAMALSRLLASQEG 3528


>mex202a13.p1k 
          Length = 30283

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 56/222 (25%), Positives = 82/222 (36%), Gaps = 48/222 (21%)
 Frame = +3

Query: 20    LCVLCGLPAAGKSTF-ARALAHRLQQE-------------QGWAIGVVAYDDVMPD---- 61
             L ++ G+PAAGKSTF A A  H +Q++              G    V+  D V+ D    
Sbjct: 13311 LFLVTGIPAAGKSTFLAAAQRHVVQRDTVSGIVPLFGGRCHGRMCAVLQLDKVLADLEAA 13490

Query: 62    -------AFLAGARARPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDF 114
                    A  AG R + +P  W+   + LL+     L                       
Sbjct: 13491 TVHEKDPAASAGER-KFSPRLWRRATRRLLELTRSALR---------------------- 13601

Query: 115   ITCLKDQDLIFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLAR-----K 169
              TC+ D         +  +    T+ AV   +F+  +DN +Y+SMR   YQ+ R     +
Sbjct: 13602 -TCIVD-------TVDGDA----TENAVVPMVFV--EDNMHYRSMRERYYQMCRTLESEE 13739

Query: 170   YSLGF------------------CQLFLDCPLETCLQRNGQR 193
             YSL +                   +L    PL  CL RN QR
Sbjct: 13740 YSLQWPHEDPTAAAQSRQTLIVLFELRFATPLAVCLARNAQR 13865


>mex581h23.p1k 
          Length = 20610

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = -1

Query: 8     RGTGSDGPRKRGLCVLCGLPAAGKSTFA--RALAHRLQQEQGWAIGVVAYDDVMPDAFLA 65
             RG  + GPR+ G C LC  P  G S  A  R      Q E     G +   D++P   LA
Sbjct: 14292 RGRHNRGPRQAGDCTLC--PRCGGSVDAGERHADGGWQAEAARGGGALQGPDLLPVR*LA 14119

Query: 66    GARA---RPAP 73
             G RA   RP P
Sbjct: 14118 GPRAAQQRPPP 14086


>1036_mexFOS1_25n05.q1kpIBR 
          Length = 67193

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = +3

Query: 4     AENIRGTGSDGPRKR----GLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVM 59
             +++ R TG +  RKR     L    G+P A  +TFA      L+Q     IG        
Sbjct: 12627 SQSWRQTGGNEERKRWRESSLLAYAGVPFANLTTFAHTAEALLEQ---ICIGPNGRQRPR 12797

Query: 60    PDAFLAGARARPAPS 74
             P   L GAR  P P+
Sbjct: 12798 PGLLLRGARGPPCPA 12842


>1036_mexFOS1_22i20.q1kpIBR 
          Length = 75043

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 3/110 (2%)
 Frame = +2

Query: 124   IFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPL 183
             +FS  F+      +++  V  P FLVL              +L+   S  FC L+   P+
Sbjct: 56423 VFSRGFD------VSRALVGVPRFLVLPS------------RLSWLRSSSFCLLWTSLPM 56548

Query: 184   ETCLQRNGQRPQALPPETIHLMGRKL---EKPNPEKNAWEHNSLTIPSPA 230
              T    +   P   P   +HL  + L   +  +P  + W H       P+
Sbjct: 56549 CTAPPLSSPPPSPFPSHPLHLQRQMLGWGQVVHPHTHPWTHRDTLCRQPS 56698


>1036_mexFOS1_31e06.q1kpIBR 
          Length = 27114

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 15    PRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIG 51
             PR+R +   C   AAG S   +    RLQ E+ W  G
Sbjct: 15745 PRRRNIVSRCASAAAGASPSRQQRQSRLQPERVWGTG 15635


>mex380f18.p1k 
          Length = 169514

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 21    CVLCGLPAAGKSTFARALAHRLQQEQGW 48
             C LCGL   G  T  R+L H   +  GW
Sbjct: 20139 CALCGLRLRGGFTVLRSLPHSRTRAAGW 20222


>mex295n15.q1k 
          Length = 95488

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 35/112 (31%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
 Frame = +2

Query: 165   QLARKYSL-GFCQLFLDC--PLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEH 221
             ++AR+ +L   C  F D   P   CL R  +R    PP  +HL       P P  +A   
Sbjct: 81095 RVARRLALFSPCASFYDSVIPSRFCLSR--RRDALSPPRQMHLWSSGALAPPPSPHA--- 81259

Query: 222   NSLTIPSPACASE-ASLEV------TDLLLTALENPVKYAEDNMEQKDTDRI 266
               LT P P CA   A +EV      T   +TA E   K      +  D DR+
Sbjct: 81260 *LLTSPPPMCAYVCARVEVHVPDQWTGWGVTATERGTKGRGGRTKFTDADRL 81415


>mex306a14.p1k 
          Length = 82495

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -1

Query: 186  CLQRNGQRPQALPPETIHLMG---RKLEKPNPEKN-AWEHNSLTIPSPACASEAS 236
            C  R   RPQA PP+T        R+   P P ++ A    +  +P+PA AS AS
Sbjct: 2029 CPARAA*RPQAAPPQTAASRAAPPRRAPAPPPARSRAHASPAPHMPAPAAASSAS 1865


>mex380g23.q1k 
          Length = 45154

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
 Frame = -1

Query: 192   QRPQALPPETIHLMGRK-------LEKPNPEKNAWEHNSLTIPSPACASEASLEVTDLL 243
             QRPQA PP T    G         +E P    + WE  S+  PS      AS E   LL
Sbjct: 29149 QRPQASPPSTFPPQGANATPDRGGMESP----SRWESGSIAPPSQRGTPSASSEQMRLL 28985


>mex337e02.p1k 
          Length = 1562

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +1

Query: 186 CLQRNGQRPQALPPETIHLMG---RKLEKPNPEKN-AWEHNSLTIPSPACASEAS 236
           C  R   RPQA PP+T        R+   P P ++ A    +  +P+PA AS AS
Sbjct: 922 CPARAA*RPQAAPPQTAASRAAPPRRAPAPPPARSRAHASPAPHMPAPAAASSAS 1086


>mex387e02.p1k 
          Length = 1068

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -2

Query: 186 CLQRNGQRPQALPPETIHLMG---RKLEKPNPEKN-AWEHNSLTIPSPACASEAS 236
           C  R   RPQA PP+T        R+   P P ++ A    +  +P+PA AS AS
Sbjct: 956 CPARAA*RPQAAPPQTAASRAAPPRRAPAPPPARSRAHASPAPHMPAPAAASSAS 792


>mex215m13.p1k 
          Length = 2112

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -2

Query: 186  CLQRNGQRPQALPPETIHLMG---RKLEKPNPEKN-AWEHNSLTIPSPACASEAS 236
            C  R   RPQA PP+T        R+   P P ++ A    +  +P+PA AS AS
Sbjct: 1001 CPARAA*RPQAAPPQTAASRAAPPRRAPAPPPARSRAHASPAPHMPAPAAASSAS 837


>mex186e16.q1k 
          Length = 1567

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +1

Query: 186 CLQRNGQRPQALPPETIHLMG---RKLEKPNPEKN-AWEHNSLTIPSPACASEAS 236
           C  R   RPQA PP+T        R+   P P ++ A    +  +P+PA AS AS
Sbjct: 190 CPARAA*RPQAAPPQTAASRAAPPRRAPAPPPARSRAHASPAPHMPAPAAASSAS 354


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 31,706,682
  Number of sequences in database:  1696
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,803,878
Number of Sequences: 1696
Number of extensions: 370690
Number of successful extensions: 2330
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 1754
Number of HSP's gapped (non-prelim): 1079
length of query: 348
length of database: 10,568,894
effective HSP length: 101
effective length of query: 247
effective length of database: 10,397,598
effective search space: 2568206706
effective search space used: 2568206706
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)