TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|74553663|sp|Q6LX62.1|PSTK_METMP RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase; Short=PSTK
         (255 letters)

Database: genome.fa 
           9 sequences; 8,347,606 total letters

Searching.........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ct...    29   1.0  
gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ct...    28   1.4  
gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 ch...    28   2.3  
gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 ch...    27   4.0  
gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ct...    27   5.2  

>gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ctg_529, whole genome shotgun
              sequence
          Length = 1835834

 Score = 28.9 bits (63), Expect = 1.0
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
 Frame = -3

Query: 27     KNIDN--IILGTDL-IRESFPVWKESYEEFIRDSNNYLIKEALENKFSVIVDDTNYYNSK 83
              KN+ N  ++  T L ++++  ++K + E+ +    ++  ++ L+ K ++  +   +  +K
Sbjct: 782136 KNVRNKQVVDNTHLQVQKTLDLFKNNTEKGVL---HFSTRDKLQPKSTI--NKATFKLNK 781972

Query: 84     RRDLMNIAKECDTNYVTIYLKAPLNLLLKRNIERG 118
                D  ++  +C TN V +YL  PLN  LK  + +G
Sbjct: 781971 LFDAKSLGFKCPTNAVKLYLIEPLNDELKIKVLKG 781867



 Score = 27.7 bits (60), Expect = 2.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 28      NIDNIILGTDLIRESFPVWKESYEEFIRDSNNYLIKEALENKF 70
               N+ N+ LGTD++   +   K +Y   +     YLI  +L NKF
Sbjct: 1801832 NLSNL-LGTDVVLNKYCDLKRAYS*DLGQLGTYLIDNSLVNKF 1801707



 Score = 27.3 bits (59), Expect = 3.0
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +3

Query: 52      EFIRDSNNYLIKEALENKFSVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYLKA--PLNL 109
               E + DS+ Y + E+L    S+ +++  +YN +        K  +TN+ T ++K+  PL  
Sbjct: 1035816 ESLSDSHMYELYESLNMFSSMSLNEIKHYNFESEKFSFFDKVLNTNHDTSWIKSLKPLKK 1035995

Query: 110     LLKRNIERGQKIPNEVIKNMYEKFD 134
                 ++  E           N+Y++ D
Sbjct: 1035996 YFEQEKEN---------SNIYKQMD 1036043


>gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ctg_530, whole genome shotgun
              sequence
          Length = 1317241

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 1      MLIILTGLPSVGKSTFSKAFSKKMAEKNIDNI 32
              +++++ G  SVGKST   +  K+ +++NI NI
Sbjct: 118058 IVVVVQGPKSVGKSTMITSLVKQYSKRNITNI 118153



 Score = 26.9 bits (58), Expect = 4.0
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 10     SVGKSTFSKAFSKKMAEKNIDNIILGTDLIRESFPVWKESYEEFIRD 56
              ++  +   K   K   EK IDN +         F  W ESYE  I+D
Sbjct: 969545 TIVSAILKKRPKKNQTEKKIDNTL---------FVFWLESYESLIKD 969432


>gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 chr2_complete, whole genome
              shotgun sequence
          Length = 1971884

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 3      IILTGLPSVGKSTFSKAFSK 22
              +ILTG P+VGKS+F    SK
Sbjct: 505469 LILTGYPNVGKSSFMNLVSK 505410



 Score = 26.2 bits (56), Expect = 6.8
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 221    IRKSFLKDCKKIESEKLDFEKIEKDFLDYLNKNLK 255
              IRK+ +K C ++ +E  + ++  K F +  +KNLK
Sbjct: 497848 IRKNLVKKCLELFNELTEKKEDFKKFYEQFSKNLK 497952


>gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 chr1_complete, whole genome
               shotgun sequence
          Length = 2540030

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -3

Query: 28      NIDNIILGTDLIRESFPVWKESYEEFIRDSNNYLIK---EALENKFSVIVDDTNYYNS 82
               N DN+  G++    + P  KE+Y   +R  N  L K   +++ N  S + D +N Y S
Sbjct: 1388232 NEDNVSEGSNKSETTEPPGKENYRIVLRQLNGKLCKKLSKSIINSLSGVNDYSNEYLS 1388059


>gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ctg_531, whole genome shotgun
              sequence
          Length = 570487

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
 Frame = +2

Query: 51     EEFIRDSNNYLIKEALENKFSVIVDDTNYYNSKR-------RDLMNI----AKECDTNYV 99
              E      NN+ +     N  +++++  N Y  +        R+L+N      K   TN  
Sbjct: 403223 EHIFNTVNNHSVNSKNSNSKNLVIEYKNNYKGREVKNYEFTRELLNKFKIKQKSNQTNVT 403402

Query: 100    TIYLKAPLNLLLKRNIERGQKIPNEVIKNMYEK 132
                +        +K  +E   K+PNE+ KN++ K
Sbjct: 403403 PRFTVESTGESVK--LEEEIKLPNELYKNLFAK 403495


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:27 PM
  Number of letters in database: 8,347,606
  Number of sequences in database:  9
  
Lambda     K      H
   0.315    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,822,836
Number of Sequences: 9
Number of extensions: 23952
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 119
length of query: 255
length of database: 2,782,535
effective HSP length: 89
effective length of query: 166
effective length of database: 2,781,734
effective search space: 461767844
effective search space used: 461767844
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)