TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|74553663|sp|Q6LX62.1|PSTK_METMP RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase; Short=PSTK
         (255 letters)

Database: genome.fa 
           5578 sequences; 78,051,097 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQY01000949.1| Phytophthora sojae strain P6497 Psojae_Cont94...    35   0.093
gb|AAQY01000221.1| Phytophthora sojae strain P6497 Psojae_Cont22...    29   6.6  

>gb|AAQY01000949.1| Phytophthora sojae strain P6497 Psojae_Cont949, whole genome shotgun
             sequence
          Length = 166052

 Score = 35.4 bits (80), Expect = 0.093
 Identities = 23/92 (25%), Positives = 41/92 (44%)
 Frame = -3

Query: 2     LIILTGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDLIRESFPVWKESYEEFIRDSNNYL 61
             +++L G P+ GKS F+K +       ++D +    +  ++                    
Sbjct: 48060 MVVLVGPPASGKSFFAKTYLSSYTVVSLDELRTAANCKKKCL------------------ 47935

Query: 62    IKEALENKFSVIVDDTNYYNSKRRDLMNIAKE 93
               EA+  K SV+VD+TN     R++ + IAKE
Sbjct: 47934 --EAIAEKKSVVVDNTNREPRARKEWITIAKE 47845


>gb|AAQY01000221.1| Phytophthora sojae strain P6497 Psojae_Cont221, whole genome shotgun
              sequence
          Length = 399879

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
 Frame = +3

Query: 6      TGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDLIRESFPVWKESYEEFIRDSNNYLIKE- 64
              TGL   GKST  +A  K++  + +    L  D +R         + E  R  +   + E 
Sbjct: 258900 TGLSGSGKSTVGRALEKELLHRRVHTYRLDGDNVRIGLN-RDLGFSETDRAESVRRVGEM 259076

Query: 65     -ALENKFSVI--VDDTNYYNSKRRDLMNIAKECDTNYVTIYLKAPLNLLLKRNIE 116
               AL ++  VI  V   + + ++R ++  + K+ D  +  +++  P+++   R+++
Sbjct: 259077 SALFSEAGVITLVALVSPFRARRDEVRELHKKMDIPFYEVFVDVPVSVAADRDVK 259241


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:09 PM
  Number of letters in database: 78,051,097
  Number of sequences in database:  5578
  
Lambda     K      H
   0.315    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,193,773
Number of Sequences: 5578
Number of extensions: 104300
Number of successful extensions: 392
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 210
length of query: 255
length of database: 26,017,032
effective HSP length: 104
effective length of query: 151
effective length of database: 25,436,920
effective search space: 3840974920
effective search space used: 3840974920
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)