TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|74553663|sp|Q6LX62.1|PSTK_METMP RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase; Short=PSTK
         (255 letters)

Database: genome.fa 
           1696 sequences; 31,706,682 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mex146m19.p1k                                                          28   4.8  
mex450b23.q1k                                                          28   4.8  
mex202a13.p1k                                                          28   4.8  

>mex146m19.p1k 
          Length = 84414

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 5     LTGLPSVGKSTFSKAFSKK 23
             + GLP+VGKSTF    SKK
Sbjct: 73464 IVGLPNVGKSTFFNVLSKK 73408


>mex450b23.q1k 
          Length = 8702

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 2    LIILTGLPSVGKSTFSKAFSKKMAEK 27
            +++L GLP  GKST + A S+ +A +
Sbjct: 3611 VVVLCGLPGAGKSTLAMALSRLLASQ 3534


>mex202a13.p1k 
          Length = 30283

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 1     MLIILTGLPSVGKSTFSKAFSKKMAEKN 28
             +L ++TG+P+ GKSTF  A  + + +++
Sbjct: 13308 LLFLVTGIPAAGKSTFLAAAQRHVVQRD 13391


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 31,706,682
  Number of sequences in database:  1696
  
Lambda     K      H
   0.315    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,231,588
Number of Sequences: 1696
Number of extensions: 31729
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 37
length of query: 255
length of database: 10,568,894
effective HSP length: 98
effective length of query: 157
effective length of database: 10,402,686
effective search space: 1633221702
effective search space used: 1633221702
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)