TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|74553663|sp|Q6LX62.1|PSTK_METMP RecName: Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec) kinase; Short=PSTK (255 letters) Database: genome.fa 2172 sequences; 20,771,095 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAFB02000070.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 37 0.009 gb|AAFB02000053.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 30 0.83 gb|AAFB02000100.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 30 1.4 gb|AAFB02000145.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 29 1.9 gb|AAFB02000102.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 29 2.4 gb|AAFB02000187.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 28 3.2 gb|AAFB02000108.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 28 3.2 gb|AAFB02000017.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 28 3.2 gb|AAFB02000001.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 28 3.2 gb|AAFB02000230.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 28 4.1 gb|AAFB02001592.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 28 5.4 gb|AAFB02001449.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 28 5.4 gb|AAFB02000299.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 28 5.4 gb|AAFB02000198.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 28 5.4 gb|AAFB02000138.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 28 5.4 gb|AAFB02000135.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 28 5.4 gb|AAFB02000950.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 27 9.2 gb|AAFB02000666.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 27 9.2 gb|AAFB02000005.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 27 9.2 >gb|AAFB02000070.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750508056, whole genome shotgun sequence Length = 50805 Score = 37.0 bits (84), Expect = 0.009 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 1/110 (0%) Frame = -3 Query: 6 TGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDLIRESFPVWKESYEEFIRDSNNYLIKEA 65 T L + KS S + + + ++DNI +LI E F +WK+ + F N K Sbjct: 34702 TVLNNTVKSIKSLLLNMIIGKISLDNIKESVELIIEIFNLWKQFFHCF-----NCKGKAK 34538 Query: 66 LENKF-SVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYLKAPLNLLLKRN 114 +EN F V+++ +NY N K D + L +NL++++N Sbjct: 34537 MENLFKEVLIEQSNYINDK-----------DNIIIPTLLSRYINLIIRKN 34421 >gb|AAFB02000053.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750508094, whole genome shotgun sequence Length = 56913 Score = 30.4 bits (67), Expect = 0.83 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 6/60 (10%) Frame = +1 Query: 71 SVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYL---KAPLNLL-LKRNIER--GQKIPNE 124 S I D+ YN+K+ +L I+K+ NY TIY+ K +NL +KR E+ G KI E Sbjct: 56194 SNIFDEIIKYNNKKWELKEISKKYKNNYKTIYIIENK*NINLYDIKRI*EK*TGTKISKE 56373 >gb|AAFB02000100.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750507712, whole genome shotgun sequence Length = 44003 Score = 29.6 bits (65), Expect = 1.4 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 13/65 (20%) Frame = -1 Query: 67 ENKFSVIVDDTNYY------------NSKRRDLMNIAKECDTNYVTI-YLKAPLNLLLKR 113 +NK V+VD YY N ++ IA++C +Y T+ Y+K +N +K Sbjct: 23381 KNKQPVVVDRKTYYNWVKLSTGPFKWNEPAKEHTFIAQDCIIDYPTLEYIKVRINYAIKN 23202 Query: 114 NIERG 118 N G Sbjct: 23201 NFSIG 23187 >gb|AAFB02000145.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750515307, whole genome shotgun sequence Length = 35880 Score = 29.3 bits (64), Expect = 1.9 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 12/93 (12%) Frame = -2 Query: 17 SKAFSKKMAEKNIDNIILGTDLIRESF--PVWKESYEEFIRDSN-NYLIKEALENK---- 69 S A + + N DN ++ D I +S V + S ++FI + + N I L+N+ Sbjct: 13796 SSANTSETTPTNQDNDLVLFDYIGDSSHDKVIQTSQDDFIDEQSFNSFIPPNLQNQENSS 13617 Query: 70 -----FSVIVDDTNYYNSKRRDLMNIAKECDTN 97 FS++++ N +K D+ + K C+TN Sbjct: 13616 NEEEDFSIVLNQINDQINKIEDVRDALKNCNTN 13518 >gb|AAFB02000102.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750511810, whole genome shotgun sequence Length = 43500 Score = 28.9 bits (63), Expect = 2.4 Identities = 17/48 (35%), Positives = 27/48 (56%) Frame = -1 Query: 48 ESYEEFIRDSNNYLIKEALENKFSVIVDDTNYYNSKRRDLMNIAKECD 95 + YEE + S+N LIKE LE I ++ +++ R DLM ++ D Sbjct: 1833 QKYEENSKSSDNKLIKEDLETNTFEIKNEVDHF---RNDLMKESQSKD 1699 >gb|AAFB02000187.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750507832, whole genome shotgun sequence Length = 30941 Score = 28.5 bits (62), Expect = 3.2 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = -3 Query: 27 KNIDNIILGTDLIRES---FPVWKESYEEFIRDSNNYLIKE 64 KNI+NII+ +E +WK+ + ++D NYL+K+ Sbjct: 7119 KNIENIIVFVKNDKEKS*KIILWKKKQKHLLKDHFNYLLKQ 6997 >gb|AAFB02000108.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750513528, whole genome shotgun sequence Length = 42500 Score = 28.5 bits (62), Expect = 3.2 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +2 Query: 71 SVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYLKAPLN 108 S I D+ YN+K+ +L I+K+ NY IY+ +N Sbjct: 41843 SNIFDEIIKYNNKKWELKEISKKYKNNYKMIYI*LKIN 41956 >gb|AAFB02000017.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750508388, whole genome shotgun sequence Length = 89534 Score = 28.5 bits (62), Expect = 3.2 Identities = 13/52 (25%), Positives = 26/52 (50%) Frame = +1 Query: 38 LIRESFPVWKESYEEFIRDSNNYLIKEALENKFSVIVDDTNYYNSKRRDLMN 89 +++E WKE +EEF+ Y+ + NK V++ + K+ ++N Sbjct: 84619 IVKEKETKWKEIFEEFV--LKEYVSTVLIPNKNGVLISSKKWNKEKKPIMIN 84768 >gb|AAFB02000001.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750515629, whole genome shotgun sequence Length = 192445 Score = 28.5 bits (62), Expect = 3.2 Identities = 13/45 (28%), Positives = 25/45 (55%) Frame = -3 Query: 81 NSKRRDLMNIAKECDTNYVTIYLKAPLNLLLKRNIERGQKIPNEV 125 N++++ L+N +E N YLK L +LK + ++PN++ Sbjct: 71237 NAQQQKLLNDIRELSRNENNRYLKKDLKEILKEEQKTKDQLPNQI 71103 >gb|AAFB02000230.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750507044, whole genome shotgun sequence Length = 25167 Score = 28.1 bits (61), Expect = 4.1 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 5/103 (4%) Frame = -3 Query: 47 KESYEEFIRDSNNYLIKEALENKFSVIVDD-----TNYYNSKRRDLMNIAKECDTNYVTI 101 K+SYE+F D I+ +N F ++ DD TN + +N ++ D Y Sbjct: 14269 KDSYEQFNVDMIETDIQMTADNNFIILHDDFLDRTTNGRGNASYYTLNKIQQLDAGY--R 14096 Query: 102 YLKAPLNLLLKRNIERGQKIPNEVIKNMYEKFDTPGTKYAWDL 144 Y + +G K+P+ ++N+Y+ F G K++ ++ Sbjct: 14095 YSPDGKTFPFR---GKGLKVPS--LQNVYDSFVNSGLKFSIEI 13982 >gb|AAFB02001592.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750508210, whole genome shotgun sequence Length = 1452 Score = 27.7 bits (60), Expect = 5.4 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -1 Query: 71 SVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYL 103 S I D+ YN+K+ +L I+K+ NY IY+ Sbjct: 1335 SNIFDEIIKYNNKKWELKEISKKYKNNYKIIYI 1237 >gb|AAFB02001449.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750505321, whole genome shotgun sequence Length = 1705 Score = 27.7 bits (60), Expect = 5.4 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 71 SVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYL 103 S I D+ YN+K+ +L I+K+ NY IY+ Sbjct: 97 SNIFDEIIKYNNKKWELKEISKKYKNNYKIIYI 195 >gb|AAFB02000299.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750507356, whole genome shotgun sequence Length = 20101 Score = 27.7 bits (60), Expect = 5.4 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -2 Query: 71 SVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYL 103 S I D+ YN+K+ +L I+K+ NY IY+ Sbjct: 864 SNIFDEIIKYNNKKWELKEISKKYKNNYKIIYI 766 >gb|AAFB02000198.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750513060, whole genome shotgun sequence Length = 29493 Score = 27.7 bits (60), Expect = 5.4 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +3 Query: 71 SVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYL 103 S I D+ YN+K+ +L I+K+ NY IY+ Sbjct: 29301 SNIFDEIIKYNNKKWELKEISKKYKNNYKIIYI 29399 >gb|AAFB02000138.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750506113, whole genome shotgun sequence Length = 36280 Score = 27.7 bits (60), Expect = 5.4 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = -2 Query: 37 DLIRESFPVWKESYEEFIR 55 D I+ ++ +WKE+Y+E IR Sbjct: 8265 DTIKRNYEMWKENYQEIIR 8209 >gb|AAFB02000135.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750508346, whole genome shotgun sequence Length = 36784 Score = 27.7 bits (60), Expect = 5.4 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +3 Query: 71 SVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYL 103 S I D+ YN+K+ +L I+K+ NY IY+ Sbjct: 3318 SNIFDEIIKYNNKKWELKEISKKYKNNYKIIYI 3416 >gb|AAFB02000950.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750513526, whole genome shotgun sequence Length = 3680 Score = 26.9 bits (58), Expect = 9.2 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -3 Query: 71 SVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYLKAPLN 108 S I ++ YN+K+ +L I+K+ NY IY+ +N Sbjct: 2322 SNIFEEIIKYNNKKWELKEISKKYKNNYKMIYI*LKIN 2209 >gb|AAFB02000666.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750507642, whole genome shotgun sequence Length = 6869 Score = 26.9 bits (58), Expect = 9.2 Identities = 19/72 (26%), Positives = 31/72 (43%) Frame = -2 Query: 63 KEALENKFSVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYLKAPLNLLLKRNIERGQKIP 122 KE ++N V + N N K N + Y+K +N +++R +E I Sbjct: 4393 KEEIKNIMKV--KNINVNNEKEYIKYNKISHKIKESIKQYIKVKVNDIIERRVECNSIIK 4220 Query: 123 NEVIKNMYEKFD 134 N +IKN + D Sbjct: 4219 NIIIKNNSTRID 4184 >gb|AAFB02000005.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750512920, whole genome shotgun sequence Length = 129391 Score = 26.9 bits (58), Expect = 9.2 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 21/100 (21%) Frame = +1 Query: 2 LIILTGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDL---IRESFPVWKESYE------E 52 +I++ G + GKST + KK+ + I+ ++ I + P +E E + Sbjct: 95644 IIVVIGATASGKSTVAHQICKKLNGEIINADVMQCYKGIPIATNKPSEEEKQEFHYHLVD 95823 Query: 53 FIRDSNNYLIKE------------ALENKFSVIVDDTNYY 80 F+ NY +++ LENK +I T+YY Sbjct: 95824 FVSSEVNYTVQQWVNDADKAIETICLENKIPIICGGTSYY 95943 Database: genome.fa Posted date: Jan 19, 2010 5:04 PM Number of letters in database: 20,771,095 Number of sequences in database: 2172 Lambda K H 0.315 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,922,496 Number of Sequences: 2172 Number of extensions: 69336 Number of successful extensions: 424 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 238 Number of HSP's successfully gapped in prelim test: 38 Number of HSP's that attempted gapping in prelim test: 156 Number of HSP's gapped (non-prelim): 327 length of query: 255 length of database: 6,923,698 effective HSP length: 95 effective length of query: 160 effective length of database: 6,717,358 effective search space: 1074777280 effective search space used: 1074777280 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 58 (26.9 bits)