TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|74553663|sp|Q6LX62.1|PSTK_METMP RecName: Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec) kinase; Short=PSTK (255 letters) Database: genome.fa 799 sequences; 32,967,507 total letters Searching.....................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_97 46 3e-05 scaffold_278 40 0.001 scaffold_349 38 0.008 scaffold_229 32 0.46 scaffold_312 30 2.3 scaffold_12 29 3.0 scaffold_121 29 3.9 scaffold_207 28 5.0 scaffold_394 28 6.6 scaffold_358 28 6.6 scaffold_98 28 6.6 scaffold_6 28 6.6 scaffold_391 28 8.6 scaffold_230 28 8.6 scaffold_64 28 8.6 scaffold_58 28 8.6 scaffold_39 28 8.6 scaffold_22 28 8.6 >scaffold_97 Length = 82995 Score = 45.8 bits (107), Expect = 3e-05 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 29/185 (15%) Frame = -3 Query: 2 LIILTGLPSVGKSTFSKAFSKKMAEKNIDNIILGTD-LIRESFPVWKESY-EEFIRDSNN 59 LI+L+G+PS GKS +K + +I+ + L+ +K+S E+ R S Sbjct: 80260 LIVLSGIPSSGKSQRAKDLYDHFTQMGKKVVIISEETLLINKNEGYKDSLTEKMTRGSLK 80081 Query: 60 YLIKEALENKFSVIVDDTNYYNSKRRDLMNIAKECDTNYVT------------------- 100 I+ L + VI D NY R +L IA+ T + Sbjct: 80080 AAIERNLNKETVVISDSLNYIKGYRYELFCIARAAGTRLLVVRILLLK*QKNCIYKYTNT 79901 Query: 101 ------IYLKAPLNLLLKRNIERGQKI--PNEVIKNMYEKFDTPGTKYAWDLPDITVDTT 152 IY P ++ + N +R + + +++ + +F+ P K WD P T++ Sbjct: 79900 VFFTY*IYCDTPRDVSKQWNSQRDSSVAFSDNLLEELTNRFEVPNPKNRWDSPLFTLEPQ 79721 Query: 153 EKIDY 157 + + Sbjct: 79720 HSLPF 79706 >scaffold_278 Length = 44317 Score = 40.4 bits (93), Expect = 0.001 Identities = 49/213 (23%), Positives = 77/213 (36%), Gaps = 70/213 (32%) Frame = -3 Query: 1 MLIILTGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDL---IRESFPVWKESYEEFIR-- 55 +L+IL GLP+ GK+TFSK + + I N+I +L I + ++ Y+E + Sbjct: 25526 LLLILIGLPACGKTTFSKTLIEYLYSNKI-NLIDNNNLTSNIDQQINIYHLEYDEIFKLI 25350 Query: 56 ----DSNNYL-------------IKEALENKFS--------------------------- 71 D+NN L I + NK + Sbjct: 25349 CKKIDNNNSLENWKPTRLEVYSQILNIINNKNNKLILLNQILPIKSYKLSNNIDNNNNNS 25170 Query: 72 -------------VIVDDTNYYNSKRRDLMNIAKEC-DTNYVTIYLKAPLNLLLKRNIER 117 +I+DD YY S R ++ + Y IY K + ++ N R Sbjct: 25169 IDNINKSKTIINLIILDDNMYYKSMRYKYYQLSNSFQNVKYCQIYFKKDIYKSIENNNNR 24990 Query: 118 ------GQKIPNEVIKNMYEKFDTPGT-KYAWD 143 + NE+IK M E + P KY W+ Sbjct: 24989 TINNQNHNNVNNEIIKKMNEIIEPPNVDKYRWE 24891 >scaffold_349 Length = 34620 Score = 37.7 bits (86), Expect = 0.008 Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 2/155 (1%) Frame = -1 Query: 2 LIILTGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDLIRESFPVWKESYEEFIRDSNNYL 61 ++I G P+ GKSTF+K + + +I+ D ++ +D Sbjct: 27831 IVISVGFPASGKSTFAKKYFGPA-----NYVIINQDTLKT-------------KDKCIKA 27706 Query: 62 IKEALENKFSVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYLKAPLNLLLKRNI--ERGQ 119 KEAL S I+D+TNY + R + +++AK+ + P +L N ER Q Sbjct: 27705 AKEALSQGKSCIIDNTNYDINTRAEYLSLAKQYKAKARCLRFTTPRDLAEHLNYYRERTQ 27526 Query: 120 KIPNEVIKNMYEKFDTPGTKYAWDLPDITVDTTEK 154 I + PG Y ++T TT++ Sbjct: 27525 NIAH-----------IPGIGYNIFAKNLTEPTTKE 27454 >scaffold_229 Length = 51307 Score = 32.0 bits (71), Expect = 0.46 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%) Frame = +3 Query: 48 ESYEEFIRDSNNYLIKEALENKFSVIVDDTNYYNSKRRDLMNIAKECDT-NYVTIYLKAP 106 E +E ++DS + +LE ++ +YYN K+ L N + DT NY I L+ Sbjct: 6963 EYVKENVKDSTKFKNNGSLEGGEDIV---NHYYNFKKSLLKNPKHQNDTHNYFKISLE-K 7130 Query: 107 LNLLLKRNIERGQKIPNEVIKNMYEK 132 LN+ RN+ + +K E K + K Sbjct: 7131 LNVENSRNLNQMEKYLLEAKKEFWNK 7208 >scaffold_312 Length = 38611 Score = 29.6 bits (65), Expect = 2.3 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Frame = +2 Query: 51 EEFIRDSNNYLI---KEALENKFSVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYLKAPL 107 ++++++++ Y+I ++ N F I ++ NYYN+ + K NY+ +YLK Sbjct: 20546 KDYLKENDLYVILSLNKSYYNSFKNIYNNNNYYNNGD----SFYKSLYNNYLNLYLKIFK 20713 Query: 108 NLLLK 112 +L +K Sbjct: 20714 SLSIK 20728 >scaffold_12 Length = 162967 Score = 29.3 bits (64), Expect = 3.0 Identities = 13/53 (24%), Positives = 30/53 (56%) Frame = -1 Query: 37 DLIRESFPVWKESYEEFIRDSNNYLIKEALENKFSVIVDDTNYYNSKRRDLMN 89 DL + + + + ++EF+ +N++ L N + I+DD+N N ++ + M+ Sbjct: 117505 DLTEDDYDIDDDDFKEFVTFTNDFQSLHNLNNLNNYILDDSNLGNLEKLNNMD 117347 >scaffold_121 Length = 76369 Score = 28.9 bits (63), Expect = 3.9 Identities = 27/120 (22%), Positives = 50/120 (41%) Frame = -2 Query: 13 KSTFSKAFSKKMAEKNIDNIILGTDLIRESFPVWKESYEEFIRDSNNYLIKEALENKFSV 72 K+ F + + N + + +G D+I+ +F V +E+ I +S+ L K+ +++ V Sbjct: 25653 KNNTLNLFQEDSLKYNQEELEIGIDMIKNNFMVDSVPFEDKINNSHLMLEKKIIDSIEKV 25474 Query: 73 IVDDTNYYNSKRRDLMNIAKECDTNYVTIYLKAPLNLLLKRNIERGQKIPNEVIKNMYEK 132 + D + I + + NLLL + I NE+I N EK Sbjct: 25473 FYISHGEPIPEYIDSLAITSTTFSISNQAIPYSVTNLLLYDGFDPNAVILNEIIPNSVEK 25294 >scaffold_207 Length = 55585 Score = 28.5 bits (62), Expect = 5.0 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 19/101 (18%) Frame = -3 Query: 29 IDNIILGTD---LIRESFPVWKESYEEFIRDSNNYLIKEALENKFS-------------- 71 I ++I+ TD LI ESF ++K+ ++N+Y ++EN + Sbjct: 28520 IFSLIIPTDNTTLINESFKIFKDLIINSSNNNNSYKTITSIENNYKNLFLYIKSSPALIC 28341 Query: 72 --VIVDDTNYYNSKRRDLMNIAKECDTNYVTIYLKAPLNLL 110 + ++ NY N+ ++L NY T Y L+LL Sbjct: 28340 LLDLFNNNNYNNTVSKELF--------NYQTWYFNGRLDLL 28242 >scaffold_394 Length = 30091 Score = 28.1 bits (61), Expect = 6.6 Identities = 24/114 (21%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Frame = +2 Query: 22 KKMAEKNIDNIILGTDLIRESFPVWKESY---EEFIRDSNNYLIKEALENKFSVIVDDTN 78 KKM EKN ++I+ ++ +E KE E+ +++ N ++ E VI Sbjct: 16112 KKMIEKNKKDVIVKEEIAKEKLKKKKEKIFKKEKIVKNVINKIVNVKEETVKIVI----- 16276 Query: 79 YYNSKRRDLMNIAKECDTNYVTIYLKAPLNLLLKRNIERGQKIPNEVIKNMYEK 132 +R++ N+ ++ ++ LK ++ IE+ + +++K++ EK Sbjct: 16277 -----KRNVKNVIEK----FMKEKLKKKKEKSVRSLIEKNVTVKEKIVKSLIEK 16411 >scaffold_358 Length = 33871 Score = 28.1 bits (61), Expect = 6.6 Identities = 29/137 (21%), Positives = 60/137 (43%), Gaps = 12/137 (8%) Frame = -1 Query: 33 ILGTDLIRESFPVWKESYEEFIRDSNNYLIKEALE------NKFSVIVDDTNYYNSKRRD 86 + G +L+ +FP S + D+ N L+ A+ +F + + +Y++ Sbjct: 12880 VFGLELVNNTFP----SIHQVQWDNLNILVLNAMNLGGKISKEFFYLKKLSIFYSTSN-- 12719 Query: 87 LMNIAKECDTNYVTIYLKAPLNLLLKRNIERGQKIPNEVIKNMYEKFDTPGTKYAWDLPD 146 +N+ + +++ K+ L+ L R+ +P++++ + D GTK PD Sbjct: 12718 -LNLQGQIPSDFTQ---KSSLSQLFLRDTGFDGTLPSDILDKNLKILDIRGTKIKGVAPD 12551 Query: 147 I------TVDTTEKIDY 157 I TV T E ++Y Sbjct: 12550 IFLCLPNTVFTGEDVNY 12500 >scaffold_98 Length = 82442 Score = 28.1 bits (61), Expect = 6.6 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 2/81 (2%) Frame = +2 Query: 56 DSNNYLIKEALENKFSVIVDD--TNYYNSKRRDLMNIAKECDTNYVTIYLKAPLNLLLKR 113 D+NN I +NK+ D N N + + + N +T YLK N LL Sbjct: 17330 DNNNGQISPTQQNKYETTTADLNVNNINVNNNNSIQSTTALNNNVITTYLKN--NNLLNN 17503 Query: 114 NIERGQKIPNEVIKNMYEKFD 134 K N +KN KF+ Sbjct: 17504 TSANKSKFNN--VKNNSNKFN 17560 >scaffold_6 Length = 201738 Score = 28.1 bits (61), Expect = 6.6 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Frame = -1 Query: 7 GLPSVGKSTFSKAFSKKMAEKNIDNII--LGTDLIRESFPVWKESYEEFIRDSNNYLIKE 64 GLP V +++ +K ++ ++AEK I LG + FP E+F RDS I E Sbjct: 164070 GLPFVHQASMAKLYASRVAEKTASACISMLGGVGFTKEFPA-----EKFFRDSKVGQIYE 163906 Query: 65 ALEN 68 N Sbjct: 163905 GTTN 163894 >scaffold_391 Length = 30286 Score = 27.7 bits (60), Expect = 8.6 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 14/111 (12%) Frame = -1 Query: 27 KNIDNIILGTDLIRESFPVWKESYEEFIRDSNNYLIKEALENKFSVIVDDTNYYNS---- 82 K IDN +L+ + F +W++S +EF+++ + I D N +NS Sbjct: 10135 KKIDN---NNELMEKIFNIWEQSIKEFLKEYD--------------ISKDKNLFNSITAT 10007 Query: 83 --KRRDLMNIAKECDT--------NYVTIYLKAPLNLLLKRNIERGQKIPN 123 K+ + + KE D+ N+ YLK ++ RN +K N Sbjct: 10006 IEKKLTTILLKKEQDSIDLNSILPNWFENYLKKTIDDAFYRNPSPSKKEEN 9854 >scaffold_230 Length = 51382 Score = 27.7 bits (60), Expect = 8.6 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = +2 Query: 49 SYEEFIRDSNNYLIKEALENKFSVIVDDTNYYNS 82 S+++ I D NNY IK + N +++ + T+ YN+ Sbjct: 5144 SHKDIIIDKNNYNIKINVNNNKNIVNNITSNYNA 5245 >scaffold_64 Length = 103366 Score = 27.7 bits (60), Expect = 8.6 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +3 Query: 221 IRKSFLKDCKKIESEKLDFEKIEKDFLDYLNKNLK 255 I SFL +K +FEK +K LNKNLK Sbjct: 456 ISLSFLPKFHSSPKKKFNFEKAQKQLFLKLNKNLK 560 >scaffold_58 Length = 107185 Score = 27.7 bits (60), Expect = 8.6 Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 8/116 (6%) Frame = -2 Query: 21 SKKMAEKNIDNIILGTDLIRESFPVWKESYEEFIRDSNNY---LIKEALENKFSVIVDDT 77 +K M +K + +I T L S+ W + YE+ + Y + L+N +V D Sbjct: 97197 NK*MKKKQLKELIQDT-LSPASYEFWDDFYEDGLGKGEQYEWYIHYNQLKNHLLELVKDK 97021 Query: 78 NYYNSKRRDLMNIAKECDTNYVTIYLKAPLNL-----LLKRNIERGQKIPNEVIKN 128 + +A++ + +I+++ LN+ ++R +ER QKI N+ +KN Sbjct: 97020 DRLLHIGCGNSFLAEDLIEDTESIHIEI-LNIDVCDNAIERMVERNQKITNQRVKN 96856 >scaffold_39 Length = 122440 Score = 27.7 bits (60), Expect = 8.6 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Frame = +2 Query: 49 SYEEFIRDSN--NYLIKEALENKFSVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYLK-- 104 S EE DSN NY I L N + + NS ++D N ++ K Sbjct: 62123 SSEEDDSDSNYINYDITTFLNNNIDNNNNPLEFLNSIKKDYNNNNNNGSLTKGEMFSKIS 62302 Query: 105 -APLNLLLKRNIERGQKIPNEV 125 +P NLLL+ N+E +++ + + Sbjct: 62303 ESPFNLLLRDNLELERQVSSSI 62368 >scaffold_22 Length = 145158 Score = 27.7 bits (60), Expect = 8.6 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = -3 Query: 2 LIILTGLPSVGKSTFSKAFSKKMAEKNIDNI-ILGTDLIRESFP 44 +++L+G VGKSTFS S +A + + +L D+ S P Sbjct: 3070 ILVLSGKGGVGKSTFSSQLSFALAMNTEEQVGLLDIDICGPSIP 2939 Database: genome.fa Posted date: Jan 16, 2009 12:50 PM Number of letters in database: 32,967,507 Number of sequences in database: 799 Lambda K H 0.315 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,146,721 Number of Sequences: 799 Number of extensions: 118557 Number of successful extensions: 554 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 38 Number of HSP's that attempted gapping in prelim test: 418 Number of HSP's gapped (non-prelim): 228 length of query: 255 length of database: 10,989,169 effective HSP length: 98 effective length of query: 157 effective length of database: 10,910,867 effective search space: 1713006119 effective search space used: 1713006119 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 60 (27.7 bits)