TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete (596 letters) Database: genome.fa 9 sequences; 8,347,606 total letters Searching.........done Score E Sequences producing significant alignments: (bits) Value gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ct... 97 7e-21 gb|AAGK01000009.1| Theileria parva strain Muguga apicoplast, com... 90 1e-18 gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 ch... 57 1e-08 gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ct... 54 9e-08 gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 ch... 41 6e-04 gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ct... 31 0.82 >gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ctg_531, whole genome shotgun sequence Length = 570487 Score = 97.4 bits (241), Expect = 7e-21 Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 4/217 (1%) Frame = -2 Query: 91 VDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIG-QIACQKLVVVLNKID 149 VDCPGHA I+ +I GA +D +LV+ G Q+ E +++ QI +LVV LNK+D Sbjct: 175839 VDCPGHADYIKNMISGAAQMDGAILVVSAPDGPMPQTREHILLARQIGVPRLVVYLNKMD 175660 Query: 150 LLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPELIELL 209 LL + + ++ + ++++ L K+ G V I +L++ Sbjct: 175659 LLEDPE---LLELVELEIRELLSEHKYDGDSTPIVKGSATKALNDDPESVQSIKDLLKAC 175489 Query: 210 TSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKK--- 266 + P R P L++VD SI G+GTV+TG + G I GD++EI K K Sbjct: 175488 DEYLLTPERKADLPLLIAVDEVMSIPGKGTVVTGRVEQGKIRPGDAIEIIGGKKAGKKST 175309 Query: 267 VKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLV 303 V ++MF + + GD++GI + + RG V Sbjct: 175308 VVGLEMFRKTLDEGIAGDQVGILLKNVKKDDVSRGFV 175198 >gb|AAGK01000009.1| Theileria parva strain Muguga apicoplast, complete genome, whole genome shotgun sequence Length = 39579 Score = 90.1 bits (222), Expect = 1e-18 Identities = 72/229 (31%), Positives = 111/229 (48%), Gaps = 10/229 (4%) Frame = +1 Query: 91 VDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIG-QIACQKLVVVLNKID 149 +DCPGHA I+ +I GA +D +LVI + G Q+ E L++ QI +KLVV LNK D Sbjct: 14596 IDCPGHADYIKNMIIGAVQMDGAILVISLEDGPMPQTIEHLLLAKQIGIKKLVVFLNKED 14775 Query: 150 LLPEGKRQAAIDKMTKKM------QKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIP 203 + + + I + TK M TL A + Sbjct: 14776 KVDDEEIIFFIKEETKSMLDKYGFDSTLTPLITGSALKALEEIKLLKEIDLNNKWISKVI 14955 Query: 204 ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKV 263 LI+ + S I P R+ + PFLM ++ F I G+GTV+TG I +G + L D VE+ Sbjct: 14956 NLIDTVDSYIEKPERNLNKPFLMPIEDSFYITGRGTVVTGRIENGIVKLNDKVELYGYDK 15135 Query: 264 VK--KVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERG-LVCAPESL 309 K V ++MF+ ++ GD +G+ + + ++RG +V P+SL Sbjct: 15136 SKLTSVIGIEMFNKGLSQGESGDNVGLLLRGIIKEDVKRGHVVAKPKSL 15282 >gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 chr1_complete, whole genome shotgun sequence Length = 2540030 Score = 57.0 bits (136), Expect = 1e-08 Identities = 58/281 (20%), Positives = 106/281 (37%), Gaps = 12/281 (4%) Frame = -3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RERGIT+D+ F T++D PGH Sbjct: 1542507 DKLKNERERGITIDITLWKFET-------------------------GKYYYTVIDAPGH 1542403 Query: 97 ASLIRTIIGGAQIIDLMMLVIDVTKG-------MQTQSAE-CLVIGQIACQKLVVVLNKI 148 I+ +I G D+ MLV+ G + Q+ E L+ + ++++ +NK+ Sbjct: 1542402 RDFIKNMITGTSQADVAMLVVPAESGGFEAAFSKEGQTREHALLAFTLGVKQMICAINKM 1542223 Query: 149 DLLPEGKRQAAIDKMTKKMQKTLENTKF--RGAPIIPVXXXXXXXXXXXXXXXXXIPE-- 204 D ++ +++ K++ L+ + P +P+ Sbjct: 1542222 DKC--DYKEDRYNEIQKEVCGYLKKIGYNVEKVPFVPISGFLGDNMIDKSDKMPWYKGKI 1542049 Query: 205 LIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVV 264 L+E L + P R P + + + I G GTV G + +G + G + ++ Sbjct: 1542048 LVEAL-DLMEPPKRPVDKPLRLPIQAVYKIGGIGTVPVGRVETGQLKAGMVITFAPSQIT 1541872 Query: 265 KKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA 305 + KS++M H + A+ GD +G V + G V + Sbjct: 1541871 TECKSVEMHHEVVEVALPGDNVGFNVKNVSTSDIRAGHVAS 1541749 Score = 45.8 bits (107), Expect = 2e-05 Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 5/80 (6%) Frame = +2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQKLVVVL- 145 V+ VDCPGH L+ T++ GA ++D +L+I + Q Q++E L +I K +++L Sbjct: 686768 VSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMRLKNILILQ 686947 Query: 146 NKIDLLPEGK---RQAAIDK 162 NK++L+ E + RQ I K Sbjct: 686948 NKVELIKESQALLRQQEIKK 687007 Score = 42.0 bits (97), Expect = 4e-04 Identities = 22/64 (34%), Positives = 35/64 (54%) Frame = +3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + A++ D +LV+DV +G+ Q+ L + K V++LNK Sbjct: 2238084 INLIDSPGHVDFSIEVSTAARLCDGALLVVDVVEGICPQTRAVLRQAWLENVKTVLILNK 2238263 Query: 148 IDLL 151 ID L Sbjct: 2238264 IDKL 2238275 Score = 31.6 bits (70), Expect = 0.48 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 2/64 (3%) Frame = -1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKL--VVVL 145 + L+D PGH + ++ D ++V+D +G+ Q+ V+ Q +++ V+ + Sbjct: 1101437 INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE--TVLRQALSERIRPVLHV 1101264 Query: 146 NKID 149 NK+D Sbjct: 1101263 NKVD 1101252 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = +2 Query: 114 MLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKIDL 150 +LV+D TKG++ Q+ I K+V V+NKID+ Sbjct: 2156987 VLVVDGTKGIEAQTVTTANIAIEKGLKIVPVVNKIDI 2157097 Score = 27.7 bits (60), Expect = 7.0 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -3 Query: 440 NTCRLAFHGILLHG 453 NTCR+ FHG+L+ G Sbjct: 2457189 NTCRVVFHGVLISG 2457148 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/58 (24%), Positives = 25/58 (43%) Frame = +2 Query: 262 KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALISV 319 ++ + +K + + ++ G R C F P L+ LVC +H +H L V Sbjct: 1758278 RITRSLKEFNVQFNDMGRSLLGPRSTDCHELFSPVKLDERLVCRMIGMHLLHYGLFDV 1758451 >gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ctg_530, whole genome shotgun sequence Length = 1317241 Score = 53.9 bits (128), Expect = 9e-08 Identities = 28/98 (28%), Positives = 55/98 (56%) Frame = -1 Query: 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLN 146 ++T +D PGHA+ + G DL++LV+ G+ Q+ EC+ + + +++ +N Sbjct: 384148 KITFIDTPGHAAFLTMRERGVSCTDLVILVVAADDGVMPQTLECIDLIKRFNLRVIAAIN 383969 Query: 147 KIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPV 184 K+DL PE +I +++K ++ L N+ G I+P+ Sbjct: 383968 KVDLTPE----ESISQVSKTLKSHLVNSNLLG--IVPI 383873 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/41 (26%), Positives = 24/41 (58%) Frame = +1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSA 128 + ++D PGH+ + I+D + L++DV +G + Q++ Sbjct: 573082 LNIIDTPGHSDFGGEVERILNIVDCVCLLVDVVEGPKAQTS 573204 >gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 chr2_complete, whole genome shotgun sequence Length = 1971884 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/60 (30%), Positives = 34/60 (56%) Frame = +1 Query: 90 LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKID 149 ++D PGH S G+ + D+ +LV+D+ G++ Q+ E + + + ++ LNKID Sbjct: 373870 IIDTPGHESFNNLRARGSSLCDIAILVVDIMHGLEPQTIESINLLKARKCYFIIALNKID 374049 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -3 Query: 512 TGELGIIDSAFGQSGKFKIHIPGGLSPES 540 T L +ID A + G+F++HI GL E+ Sbjct: 352017 TNRLDMIDEALLRPGRFEVHIEVGLPDEN 351931 >gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ctg_529, whole genome shotgun sequence Length = 1835834 Score = 30.8 bits (68), Expect = 0.82 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = -2 Query: 89 TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKG 122 T++D PGH + + +I GA D +L+I KG Sbjct: 1023136 TILDAPGHRNYVPNMIDGATQADCGVLIISARKG 1023035 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Frame = -2 Query: 90 LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQK--LVVVLNK 147 + D PGH + + + I D +LVIDV G+ + + + +I Q + + +VLN Sbjct: 304342 IFDTPGHVNFMDEFVHALAICDGCVLVIDVLMGLTSVTEQ--IIRQCVHDQVHMCLVLNC 304169 Query: 148 IDLL 151 ID L Sbjct: 304168 IDRL 304157 Database: genome.fa Posted date: Jan 19, 2010 5:27 PM Number of letters in database: 8,347,606 Number of sequences in database: 9 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,247,160 Number of Sequences: 9 Number of extensions: 54809 Number of successful extensions: 195 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113 Number of HSP's gapped (non-prelim): 170 length of query: 596 length of database: 2,782,535 effective HSP length: 97 effective length of query: 499 effective length of database: 2,781,662 effective search space: 1388049338 effective search space used: 1388049338 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (27.3 bits)