TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete (596 letters) Database: genome.fa 218 sequences; 41,633,360 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_16 102 8e-22 scaffold_3 72 2e-12 scaffold_9 62 1e-09 scaffold_4 40 0.005 scaffold_37 38 0.033 scaffold_15 37 0.073 scaffold_28 33 0.62 scaffold_36 32 1.8 scaffold_6 30 8.9 >scaffold_16 Length = 929013 Score = 102 bits (255), Expect = 8e-22 Identities = 64/156 (41%), Positives = 78/156 (50%), Gaps = 66/156 (42%) Frame = -3 Query: 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTK------------------------- 121 QVTLVDCPGHASLI+TIIGGAQIIDLMMLVIDV K Sbjct: 536164 QVTLVDCPGHASLIKTIIGGAQIIDLMMLVIDVQKGTMCCVLFSLNGAIAAADARQRPPL 535985 Query: 122 ------GMQTQSAECLVIGQIACQKL---------------------------------- 141 G+QTQ+AECL+IG+I C +L Sbjct: 535984 RIPCTVGIQTQTAECLIIGEITCDRLVRRPGVGSGLTFLGCRCPYRECS*SLGTSPCACG 535805 Query: 142 -VVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKF 176 VVV+NK+D+LPEG R+ I+KM ++ KT T+F Sbjct: 535804 *VVVINKVDMLPEGDREKQIEKMKLRLAKTFAQTRF 535697 Score = 84.0 bits (206), Expect = 4e-16 Identities = 46/129 (35%), Positives = 67/129 (51%), Gaps = 40/129 (31%) Frame = -1 Query: 263 VVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVH--------- 313 V +KVKSMQMF P+TSA+QGDRLGICVTQFD +ERG++ AP S+ V Sbjct: 535044 VQRKVKSMQMFKRPVTSAVQGDRLGICVTQFDASSMERGILAAPGSMRAVTGAQDFFFF* 534865 Query: 314 -------------------------------AALISVEKIPYFRGPLQTKAKFHITVGHE 342 AA+ +V +I +++ L ++ K H++VGH Sbjct: 534864 IHISPPFFCLLKGCCASQTYASPMLFRAMSIAAVAAVRRIRFYKQALSSRTKIHVSVGHH 534685 Query: 343 TVMGRLMFF 351 T++ ++FF Sbjct: 534684 TLLATVLFF 534658 Score = 60.1 bits (144), Expect(2) = 5e-14 Identities = 29/70 (41%), Positives = 45/70 (64%) Frame = -1 Query: 481 RAMDDYSVIGRSLFKKETNIQLFVGLKVHLSTGELGIIDSAFGQSGKFKIHIPGGLSPES 540 R DDY+++ R +F KET++ F + LSTG+ G+I+ AFGQSGKFK+ + LS + Sbjct: 533913 RVHDDYTLVCRDMFTKETDMNKFAYKPITLSTGDTGMIEGAFGQSGKFKVRLDEPLSQAA 533734 Query: 541 KKILTPALKK 550 + L + K+ Sbjct: 533733 RDRLPKSRKQ 533704 Score = 38.9 bits (89), Expect = 0.015 Identities = 17/36 (47%), Positives = 21/36 (58%) Frame = -1 Query: 202 IPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQ 237 I L++ L + P R GPF +VDHCF IKGQ Sbjct: 535470 IENLMDQLVQALPRPARQVDGPFQFAVDHCFPIKGQ 535363 Score = 37.4 bits (85), Expect = 0.043 Identities = 17/24 (70%), Positives = 18/24 (75%) Frame = -3 Query: 36 FDKQPQSRERGITLDLGFSCFSVP 59 FDK PQS+ RGITLDLG S S P Sbjct: 536533 FDKNPQSKARGITLDLGMSHVSTP 536462 Score = 37.4 bits (85), Expect = 0.043 Identities = 19/41 (46%), Positives = 25/41 (60%) Frame = -3 Query: 409 QQWALVEFEKPVTCPRLCLVIGSRLDADIHTNTCRLAFHGI 449 QQ+A++EF PV C LVIGSRLDA + R + G+ Sbjct: 534334 QQYAVLEFATPVMCSPTSLVIGSRLDAQHDASAVRPSHLGL 534212 Score = 37.0 bits (84), Expect(2) = 5e-14 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Frame = -2 Query: 424 RLCLVIGSRLDADIHTNT-CRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVERA 482 RL ++ S+ T T CRLAFHG L + + S+LP ++VY+ + + G VER+ Sbjct: 534200 RLSPILISQTPCTFMTGTQCRLAFHGRLHAITSEADPRTSWLPSIRVYRDRVREGTVERS 534021 Query: 483 M 483 + Sbjct: 534020 V 534018 Score = 35.4 bits (80), Expect = 0.16 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%) Frame = -2 Query: 237 QGTVMTGTILSGSISLGDSVEIPALKVVKKVKSM--QMFHMPITSAMQGDRLG-ICVTQF 293 QGTV+TGTI G + + D +E+P L+V+ + + + + I A + G C+ +F Sbjct: 535220 QGTVLTGTITRGRVKVDDMIEVPHLQVLIRQSWLGPPLLAVAIARAFEHSTAGPYCLLRF 535041 Query: 294 DPK 296 + K Sbjct: 535040 NAK 535032 >scaffold_3 Length = 2609234 Score = 71.6 bits (174), Expect = 2e-12 Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 3/111 (2%) Frame = -1 Query: 202 IPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPAL 261 I +L+E + + I P RD PFLM V++ FSI G+GTV+TG I G + GD VEI Sbjct: 69875 ILKLMEAVDNWIPTPVRDLDKPFLMPVENAFSISGRGTVVTGKIERGIVKKGDEVEIIGY 69696 Query: 262 --KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLV-CAPESL 309 + + ++MFH +T GD LG + +G+V CAP S+ Sbjct: 69695 GKNIKTTITGLEMFHKDLTEGQAGDNLGALCRGIKREDATKGMVMCAPGSV 69543 Score = 33.5 bits (75), Expect = 0.62 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Frame = -1 Query: 96 HASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIG-QIACQKLVVVLNKIDLLPE 153 HASL R +I + +D +LV+ T G Q+ E L++ Q+ LVV +NK D++ + Sbjct: 70307 HASLSRPVID-SY*MDGAILVVSATDGQMPQTREHLLLAKQVGVGHLVVFINKADMIDD 70134 >scaffold_9 Length = 1303534 Score = 62.4 bits (150), Expect = 1e-09 Identities = 54/240 (22%), Positives = 98/240 (40%), Gaps = 40/240 (16%) Frame = -1 Query: 89 TLVDCPGHASLIRTIIGGAQIIDLMMLVID--------VTKG------MQTQSAE-CLVI 133 T++D PGH I+ +I GA D+ +L++ + KG +Q Q+ + ++I Sbjct: 435025 TVIDAPGHRDFIKNMITGASQADVALLMVPCDGNFTAAIAKGNHKAGEVQGQTRQHAVLI 434846 Query: 134 GQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFR------GAPIIPVXXX 187 + ++L+V NK+D G +A ++ +M L ++ P++P+ Sbjct: 434845 NLLGVKQLIVGCNKMDCDVAGYGEARFKEVRDEMVHMLIKVGWKKSFVEESVPVLPISGW 434666 Query: 188 XXXXXXXXXXXXXX--------------IPELIELLTSQISIPTRDPSGPFLMSVDHCFS 233 I L + L + +P R P + F Sbjct: 434665 KGDNLITKTTNMSWWNGVDVKVDSETIHIDCLQDALEKMVRVPQRATDKPMRTPISGVFK 434486 Query: 234 IKGQGTVMTGTILSGSISLGDSV-----EIPALKVVKKVKSMQMFHMPITSAMQGDRLGI 288 IKG G V+TG + G++ GD V + KV +++M H + +AM GD +G+ Sbjct: 434485 IKGVGDVLTGRVEQGTVKPGDEVVFLPTHTSSTACTGKVFTVEMHHKSVEAAMTGDNVGL 434306 Score = 37.4 bits (85), Expect = 0.043 Identities = 18/61 (29%), Positives = 31/61 (50%) Frame = +3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 V L+DCPGH + ++ D ++V+D +G+ Q+ L + V+VLNK Sbjct: 372504 VNLIDCPGHVDFSGEVTASLRLADGALVVVDAIEGVGVQTETVLRQALAEGVRPVLVLNK 372683 Query: 148 I 148 + Sbjct: 372684 V 372686 Score = 31.6 bits (70), Expect = 2.4 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +3 Query: 538 PESKKILTPALKKRARAGRGEATRQEESAERSEPSQH 574 P+S I TP+ + R G GEA R+++ A +S P H Sbjct: 1027065 PDSAAIETPSPVCQTRQGTGEAVREQQRAPKSPP*AH 1027175 >scaffold_4 Length = 2081438 Score = 40.4 bits (93), Expect = 0.005 Identities = 17/62 (27%), Positives = 36/62 (58%) Frame = -3 Query: 90 LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKID 149 ++D PGH + G+ + ++ +LV+D+ G++ Q+AE + + + ++ LNK+D Sbjct: 1391271 VIDTPGHEAFSNLRSRGSSLCNIAILVVDIMHGIEPQTAESIELLRRRKAPFIIALNKVD 1391092 Query: 150 LL 151 L Sbjct: 1391091 RL 1391086 >scaffold_37 Length = 404957 Score = 37.7 bits (86), Expect = 0.033 Identities = 15/64 (23%), Positives = 34/64 (53%) Frame = +1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 V ++D PGH I + ++ D +++V+D +G+ + + +A + +++NK Sbjct: 284752 VNVMDTPGHVDFIDEVTAAVRLADGVVVVVDAVEGVMLNTHRVIKQAALARVPITLIINK 284931 Query: 148 IDLL 151 +D L Sbjct: 284932 VDRL 284943 >scaffold_15 Length = 1049915 Score = 36.6 bits (83), Expect = 0.073 Identities = 16/37 (43%), Positives = 27/37 (72%) Frame = +2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQ 124 V+ VDCPGH L+ T++ GA ++D +L+I ++ G+Q Sbjct: 39686 VSFVDCPGHDILMATMLNGAAVMDAALLLIGMS-GLQ 39793 >scaffold_28 Length = 614053 Score = 33.5 bits (75), Expect = 0.62 Identities = 17/62 (27%), Positives = 29/62 (46%) Frame = +1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + ++ D ++V+D G+ Q+ L K V+ LNK Sbjct: 419818 INLIDSPGHVDFSSEVTAALRVTDGALVVVDAVSGVCVQTETVLRQAIAERIKPVLFLNK 419997 Query: 148 ID 149 +D Sbjct: 419998 MD 420003 >scaffold_36 Length = 406081 Score = 32.0 bits (71), Expect = 1.8 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 8/67 (11%) Frame = -1 Query: 374 LFQEQYLSKDLTPAVTDNDEADKKAGQATEGHCPRQQWALVEFE--------KPVTCPRL 425 + +EQY+ + + VT N K T GH Q + FE KP+ CP Sbjct: 191920 MIREQYIKRGFSEVVTPN--IFNKNLWETSGHWQHYQENIFSFEVEKEIFAMKPMNCPSH 191747 Query: 426 CLVIGSR 432 C++ G R Sbjct: 191746 CIMFGHR 191726 >scaffold_6 Length = 1473069 Score = 29.6 bits (65), Expect = 8.9 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -3 Query: 89 TLVDCPGHASLIRTIIGGAQIIDLMMLV 116 T++D PGH S + +I GA D+ +LV Sbjct: 1005634 TVIDAPGHKSFVPNMISGAAQADVAVLV 1005551 Database: genome.fa Posted date: Jan 19, 2010 5:06 PM Number of letters in database: 41,633,360 Number of sequences in database: 218 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,420,439 Number of Sequences: 218 Number of extensions: 426065 Number of successful extensions: 2011 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 1693 Number of HSP's gapped (non-prelim): 849 length of query: 596 length of database: 13,877,786 effective HSP length: 108 effective length of query: 488 effective length of database: 13,854,242 effective search space: 6760870096 effective search space used: 6760870096 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 65 (29.6 bits)