TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete (596 letters) Database: genome.fa 2172 sequences; 20,771,095 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAFB02000159.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 70 2e-12 gb|AAFB02000671.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 70 4e-12 gb|AAFB02000354.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 70 4e-12 gb|AAFB02000464.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 63 5e-10 gb|AAFB02000260.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 58 1e-08 gb|AAFB02000374.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 45 1e-04 gb|AAFB02000008.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 39 0.009 gb|AAFB02000521.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 37 0.036 gb|AAFB02000115.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 37 0.036 gb|AAFB02000105.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 37 0.036 gb|AAFB02000005.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 37 0.036 gb|AAFB02000190.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 30 4.4 >gb|AAFB02000159.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750513490, whole genome shotgun sequence Length = 33909 Score = 70.5 bits (171), Expect = 2e-12 Identities = 64/282 (22%), Positives = 114/282 (40%), Gaps = 13/282 (4%) Frame = +3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 D RERGIT+D+ F T++D PGH Sbjct: 13659 DNLKAERERGITIDISLWKFETS-------------------------KYYFTIIDAPGH 13763 Query: 97 ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 I+ +I G D+ +L++ ++K QT+ L+ + ++++V +NK Sbjct: 13764 RDFIKNMITGTSQADVAILIVAAGTGEFEAGISKNGQTRE-HILLSYTLGVKQMIVGVNK 13940 Query: 148 IDLLPEGKRQAAIDKMTKKMQKTLENTKFR--GAPIIPVXXXXXXXXXXXXXXXXXI--P 203 +D + +Q +++ K++ L+ T + P +P+ P Sbjct: 13941 MDAIQ--YKQERYEEIKKEISAFLKKTGYNPDKIPFVPISGFQGDNMIEPSTNMPWYKGP 14114 Query: 204 ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKV 263 LI L S ++ P R P + + + I G GTV G + +G + G V+ V Sbjct: 14115 TLIGALDS-VTPPERPVDKPLRLPLQDVYKISGIGTVPVGRVETGILKPGTIVQFAPSGV 14291 Query: 264 VKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA 305 + KS++M H + A+ GD +G V K ++RG V + Sbjct: 14292 SSECKSIEMHHTALAQAIPGDNVGFNVRNLTVKDIKRGNVAS 14417 >gb|AAFB02000671.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750515481, whole genome shotgun sequence Length = 6812 Score = 69.7 bits (169), Expect = 4e-12 Identities = 64/282 (22%), Positives = 114/282 (40%), Gaps = 13/282 (4%) Frame = +3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 D RERGIT+D+ F T++D PGH Sbjct: 4275 DNLKAERERGITIDISLWKFETS-------------------------KYYFTIIDAPGH 4379 Query: 97 ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 I+ +I G D+ +L++ ++K QT+ L+ + ++++V +NK Sbjct: 4380 RDFIKNMITGTSQADVAILIVAAGTGEFEAGISKNGQTRE-HILLSYTLGVKQMIVGVNK 4556 Query: 148 IDLLPEGKRQAAIDKMTKKMQKTLENTKFR--GAPIIPVXXXXXXXXXXXXXXXXXI--P 203 +D + +Q +++ K++ L+ T + P +P+ P Sbjct: 4557 MDAIQ--YKQERYEEIKKEISAFLKKTGYNPDKIPFVPISGFQGDNMIEPSTNMPWYKGP 4730 Query: 204 ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKV 263 LI L S ++ P R P + + + I G GTV G + +G + G V+ V Sbjct: 4731 TLIGALDS-VTPPERPVDKPLRLPLQDVYKISGIGTVPCGRVETGVLRPGTIVQFAPSGV 4907 Query: 264 VKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA 305 + KS++M H + A+ GD +G V K ++RG V + Sbjct: 4908 SSECKSVEMHHTALAQAIPGDNVGFNVRNLTVKDIKRGNVAS 5033 >gb|AAFB02000354.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750507676, whole genome shotgun sequence Length = 16484 Score = 69.7 bits (169), Expect = 4e-12 Identities = 64/282 (22%), Positives = 114/282 (40%), Gaps = 13/282 (4%) Frame = -3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 D RERGIT+D+ F T++D PGH Sbjct: 4131 DNLKAERERGITIDISLWKFETS-------------------------KYYFTIIDAPGH 4027 Query: 97 ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 I+ +I G D+ +L++ ++K QT+ L+ + ++++V +NK Sbjct: 4026 RDFIKNMITGTSQADVAILIVAAGTGEFEAGISKNGQTRE-HILLSYTLGVKQMIVGVNK 3850 Query: 148 IDLLPEGKRQAAIDKMTKKMQKTLENTKFR--GAPIIPVXXXXXXXXXXXXXXXXXI--P 203 +D + +Q +++ K++ L+ T + P +P+ P Sbjct: 3849 MDAIQ--YKQERYEEIKKEISAFLKKTGYNPDKIPFVPISGFQGDNMIEPSTNMPWYKGP 3676 Query: 204 ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKV 263 LI L S ++ P R P + + + I G GTV G + +G + G V+ V Sbjct: 3675 TLIGALDS-VTPPERPVDKPLRLPLQDVYKISGIGTVPCGRVETGVLRPGTIVQFAPSGV 3499 Query: 264 VKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA 305 + KS++M H + A+ GD +G V K ++RG V + Sbjct: 3498 SSECKSVEMHHTALAQAIPGDNVGFNVRNLTVKDIKRGNVAS 3373 >gb|AAFB02000464.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750512546, whole genome shotgun sequence Length = 11924 Score = 62.8 bits (151), Expect = 5e-10 Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 10/181 (5%) Frame = -3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQKLVVVL- 145 V+ VDCPGH SL+ T++ G ++D +L++ K Q Q++E L + K +++L Sbjct: 10503 VSFVDCPGHDSLMMTMLTGTAVMDGALLLVAGNKPCPQPQTSEHLAAVEFMKLKHMIILQ 10324 Query: 146 NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPEL 205 NKIDL+ K + K +++++ ++ + APIIP+ + + Sbjct: 10323 NKIDLV---KTKEDAQKNYQQIKEFVKGSIAENAPIIPI----------CAQLKYNMDVV 10183 Query: 206 IELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGT--------VMTGTILSGSISLGDSVE 257 E + I +P RD M++ F I GT V+ GT+ G + LGD +E Sbjct: 10182 CEYICHSIPVPQRDFKVNPRMTIIRSFDINKPGTLPQDLIGGVIGGTLSQGMLKLGDEIE 10003 Query: 258 I 258 I Sbjct: 10002 I 10000 >gb|AAFB02000260.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750513572, whole genome shotgun sequence Length = 22950 Score = 58.2 bits (139), Expect = 1e-08 Identities = 76/348 (21%), Positives = 134/348 (38%), Gaps = 24/348 (6%) Frame = +1 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 D+ + + +GIT+D+G + F + T++D PGH Sbjct: 14473 DQIEEEKSKGITIDVGRALFETE-------------------------KRRYTILDAPGH 14577 Query: 97 ASLIRTIIGGAQIIDLMMLVIDVTKG-----------MQTQSAECLVIGQIACQKLVVVL 145 S + +I A D+ +L++ KG + S C G + +++ + Sbjct: 14578 RSFVPNMISAAAQADIAVLIVSARKGEFETGFDKGGQTREHSQLCRTAG---VKTVIIAV 14748 Query: 146 NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXI--- 202 NK+D G ++ D++ K++ L F IP+ Sbjct: 14749 NKMDEKTVGWEKSRYDEIVNKVKPFLRQCGFSDIYSIPISGFSGLNLTKRLDKGVCSWYD 14928 Query: 203 -PELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPAL 261 P L+ELL S I + +P+GP M + F +V+ G + SG+I G + Sbjct: 14929 GPCLVELLDS-IKLVMGNPNGPIRMPIIDKFKDGKGNSVIMGKVESGTIYKGSKCVVMPN 15105 Query: 262 KVVKKVKSMQMFH--MPITSAMQGDRLGICVTQFDPKLLERGLV-CAPESL---HTVHAA 315 KV +V + +P + A GD + I + ++ G V C+P + + A Sbjct: 15106 KVDLEVTGITYDENSVPASKARPGDNVRIQMKGDQADSIQTGFVLCSPSDVCHFTNLFQA 15285 Query: 316 LISVEKIPYFRGPLQT---KAKFHITVGHETVMGRLMFFSPAPDNFDQ 360 + V ++P PL T +A HI E V+ + D FD+ Sbjct: 15286 QLVVLELP---RPLLTPGYEAVIHIHTSQEEVV-----ITKITDQFDR 15405 >gb|AAFB02000374.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750504755, whole genome shotgun sequence Length = 15600 Score = 44.7 bits (104), Expect = 1e-04 Identities = 60/287 (20%), Positives = 114/287 (39%), Gaps = 18/287 (6%) Frame = -3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQI----------A 137 + ++D PGH + I D+ ++V+DV K + +C G Sbjct: 12472 IRILDAPGHTDFLMKTIDAMNEADVAVVVVDVDK----HNLKCTYEGTFLDIVSTLAYST 12305 Query: 138 CQKLVVVLNKIDLL--PEGKRQAAIDKMTKKMQK-TLENTKFRGAPIIPVXXXXXXXXXX 194 K++V +NK+D + E K ++ + + +++ L+N R IP+ Sbjct: 12304 VSKIIVAINKMDSVKWSESKYKSVVSVAEELLKEYNLDNINIR---YIPISGLSGENLIK 12134 Query: 195 XXXXXXXIPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGD 254 E + + S+ S D P + + +G G+V+TG I SG I D Sbjct: 12133 PTTSCKWCQESLLSVISEESAQFHDIEKPLRFICNDSYK-QGNGSVITGIISSGVIGEKD 11957 Query: 255 SVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPES----LH 310 V I + +K ++ + I A GD + I V + +++ ++ +P Sbjct: 11956 DVIIYPTQTHGVIKKIKKGNQIIDCAGAGDIVEIQVDGTNLNIMKGYVIGSPAEPPIYYK 11777 Query: 311 TVHAAL-ISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPD 356 HA + ++ + RG L + F+ + G + +FFS D Sbjct: 11776 KFHATVDLNCRDLIIRRGTLMS---FYCSTGSSPCVFARIFFSGIQD 11645 >gb|AAFB02000008.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750512822, whole genome shotgun sequence Length = 118116 Score = 38.5 bits (88), Expect = 0.009 Identities = 19/60 (31%), Positives = 33/60 (55%) Frame = +2 Query: 90 LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKID 149 ++D PGH + G + D+ +LV+D+ G++ Q+ E + + + VV LNKID Sbjct: 88052 VMDTPGHEAFNNLRSRGTSLCDIAVLVVDLMHGLEPQTIESINLLKQKNTPFVVALNKID 88231 >gb|AAFB02000521.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750512674, whole genome shotgun sequence Length = 10182 Score = 36.6 bits (83), Expect = 0.036 Identities = 16/62 (25%), Positives = 31/62 (50%) Frame = -1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + ++ D ++V+D +G+ Q+ L K +V++NK Sbjct: 4485 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALTERVKPIVIINK 4306 Query: 148 ID 149 +D Sbjct: 4305 VD 4300 >gb|AAFB02000115.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750510372, whole genome shotgun sequence Length = 41185 Score = 36.6 bits (83), Expect = 0.036 Identities = 16/62 (25%), Positives = 31/62 (50%) Frame = +3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + ++ D ++V+D +G+ Q+ L K +V++NK Sbjct: 15756 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALTERVKPIVIINK 15935 Query: 148 ID 149 +D Sbjct: 15936 VD 15941 >gb|AAFB02000105.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750513086, whole genome shotgun sequence Length = 43065 Score = 36.6 bits (83), Expect = 0.036 Identities = 16/62 (25%), Positives = 31/62 (50%) Frame = +1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + ++ D ++V+D +G+ Q+ L K +V++NK Sbjct: 6424 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALTERVKPIVIINK 6603 Query: 148 ID 149 +D Sbjct: 6604 VD 6609 >gb|AAFB02000005.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750512920, whole genome shotgun sequence Length = 129391 Score = 36.6 bits (83), Expect = 0.036 Identities = 18/64 (28%), Positives = 33/64 (51%) Frame = +3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + LVD PGH + ++ D +LV+D +G+ Q+ L ++++++NK Sbjct: 100470 LNLVDSPGHVDFSGEVSSAVRLTDGALLVVDCIEGVCVQTQTVLRQAASEGLQMILIINK 100649 Query: 148 IDLL 151 ID L Sbjct: 100650 IDRL 100661 >gb|AAFB02000190.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750511516, whole genome shotgun sequence Length = 30427 Score = 29.6 bits (65), Expect = 4.4 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = +2 Query: 295 PKLLERGLVCAPESLHTVHAALISVEKIPYF 325 P LL+ GL+C ESL T I + IPYF Sbjct: 21947 PSLLDNGLICHVESLKT-----IKLSSIPYF 22024 Database: genome.fa Posted date: Jan 19, 2010 5:04 PM Number of letters in database: 20,771,095 Number of sequences in database: 2172 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,916,508 Number of Sequences: 2172 Number of extensions: 122953 Number of successful extensions: 524 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 22 Number of HSP's that attempted gapping in prelim test: 434 Number of HSP's gapped (non-prelim): 133 length of query: 596 length of database: 6,923,698 effective HSP length: 103 effective length of query: 493 effective length of database: 6,699,982 effective search space: 3303091126 effective search space used: 3303091126 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 62 (28.5 bits)