TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete (596 letters) Database: genome.fa 799 sequences; 32,967,507 total letters Searching.....................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_198 278 e-100 scaffold_25 73 6e-13 scaffold_265 65 1e-10 scaffold_75 64 3e-10 scaffold_337 59 1e-08 scaffold_19 49 1e-05 scaffold_6 45 2e-04 scaffold_192 37 0.044 scaffold_285 36 0.075 scaffold_202 36 0.075 scaffold_516 36 0.099 scaffold_39 36 0.099 scaffold_413 33 0.83 scaffold_272 31 2.4 scaffold_26 30 4.1 scaffold_325 30 7.1 >scaffold_198 Length = 58540 Score = 278 bits (712), Expect(2) = e-100 Identities = 147/367 (40%), Positives = 218/367 (59%), Gaps = 15/367 (4%) Frame = -3 Query: 130 CLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXX 189 C+VIG+I C+K +++LNKID +P R I+ ++ K++K LE T F+ +PI+P Sbjct: 13526 CIVIGEITCKKGIIILNKIDQIPIENRNEKIESVSGKLRKALEKTCFKESPIVPFSANPS 13347 Query: 190 XXXXXXXXXXXX----------IPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGT 239 + EL + L + +P R+ G L DHCF IKGQG+ Sbjct: 13346 DNNNNNNNSDNNDDNNIAKPIGLNELYKELNKYLVVPKREEKGDLLFEFDHCFQIKGQGS 13167 Query: 240 VMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLE 299 V+TGTIL G+I + +++IP L + KKVKSMQMFH PI A+QGDR+G+CVTQ D KLLE Sbjct: 13166 VLTGTILRGTIEVNQTIQIPQLNLEKKVKSMQMFHKPIKKAIQGDRVGVCVTQLDSKLLE 12987 Query: 300 RGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFS---PAPD 356 RGLVC+ S+ ++ +ALIS+EK+ +++ + TK+KFHIT+GH TV+ L +FS P + Sbjct: 12986 RGLVCSNNSIPSLSSALISIEKVRFYKSEVHTKSKFHITIGHSTVIASLTYFSAIVPNSN 12807 Query: 357 NFDQEPILDSFNFSQEYLFQEQYLSKDLTPAVTDNDEADKKAGQATEGHCP-RQQWALVE 415 N + +FN+S EY++Q+ AT P Q+AL++ Sbjct: 12806 NGSGDNNNSTFNYSNEYIYQDTL--------------------NATSPEFPVGSQFALIK 12687 Query: 416 FEKPVTCPRLCLVIGSRLDADIHTNTCRLAFHGILLHGLEDRN-YADSFLPRLKVYKLKH 474 F+ P+ CP ++IGS+LD + CR+AFHG L+ G++D++ + L +LK+YK K Sbjct: 12686 FDHPILCPLNSVIIGSKLDVSTDSTGCRIAFHGTLIEGVDDKSPNSKQSLSKLKIYKTKS 12507 Query: 475 KHGLVER 481 K G VER Sbjct: 12506 KQGQVER 12486 Score = 107 bits (266), Expect(2) = e-100 Identities = 59/117 (50%), Positives = 70/117 (59%) Frame = -1 Query: 13 LGHIDSGKXXXXXXXXXXXXXXXFDKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXX 72 +GHIDSGK DK P+SR RGITLDLGFS F + L ++ Sbjct: 13945 MGHIDSGKTSLAKALSTNLSTASLDKSPESRMRGITLDLGFSSFQLNREL-LNNAIGNDE 13769 Query: 73 XXXXXXXXXXXXXXQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAE 129 Q+TLVDCPGHASLIRTIIGG+QIID+M LVID+ KG+QTQ+AE Sbjct: 13768 SSSWGNKIDNNQNIQITLVDCPGHASLIRTIIGGSQIIDMMFLVIDINKGIQTQTAE 13598 Score = 61.2 bits (147), Expect = 2e-09 Identities = 32/80 (40%), Positives = 52/80 (65%) Frame = -2 Query: 464 LPRLKVYKLKHKHGLVERAMDDYSVIGRSLFKKETNIQLFVGLKVHLSTGELGIIDSAFG 523 L L Y L + + L + + ++IG++LFKK++++ F+G+KV TGE GII+S+FG Sbjct: 12465 LSLLTFY*L*NYYNLFYQVHNQDTLIGKNLFKKDSDMTSFIGMKVVFETGETGIIESSFG 12286 Query: 524 QSGKFKIHIPGGLSPESKKI 543 + GK KI + ++ ES KI Sbjct: 12285 KGGKTKIQLLNNVAAESIKI 12226 >scaffold_25 Length = 142329 Score = 73.2 bits (178), Expect = 6e-13 Identities = 66/280 (23%), Positives = 110/280 (39%), Gaps = 13/280 (4%) Frame = +3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RERGIT+D+ F T++D PGH Sbjct: 18636 DKLKAERERGITIDIALWKFET-------------------------NKYYFTIIDAPGH 18740 Query: 97 ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 I+ +I G D +LVI + K QT+ L+ + ++++V +NK Sbjct: 18741 RDFIKNMITGTSQADCAVLVIASPTGEFEAGIAKNGQTRE-HALLAYTLGVKQMIVAINK 18917 Query: 148 IDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXXXXXXXI--P 203 +D +A D++ K+ ++ + + +P+ P Sbjct: 18918 MDEKSTNYSKARYDEIVKETSSFIKKIGYNPEKVSFVPISGWNGDNMLERSTNMPWYTGP 19097 Query: 204 ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKV 263 L+E L + + P R P + + + I G GTV G + +G I G V + Sbjct: 19098 TLLEALDAIVE-PKRPVEKPLRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGL 19274 Query: 264 VKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLV 303 +VKS++M H + SA GD +G V K ++RG+V Sbjct: 19275 STEVKSVEMHHEQLPSAQPGDNVGFNVKNVSVKDIKRGMV 19394 >scaffold_265 Length = 46663 Score = 65.5 bits (158), Expect = 1e-10 Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 3/111 (2%) Frame = +1 Query: 202 IPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPAL 261 I L+E L ++I +P R PFLM V+ FSI G+GTV TG I G++ +G+ + I + Sbjct: 39643 IDRLVEFLDTKIPLPHRAVDKPFLMPVEEVFSISGRGTVATGRIEQGTVKVGEEISIIGI 39822 Query: 262 KVVKK--VKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERG-LVCAPESL 309 K V K V ++MF + A G+ +G + + + RG ++C P ++ Sbjct: 39823 KPVPKVAVTGIEMFGKLLDFAQAGENVGCLLRGLKREEVLRGEVLCKPGTI 39975 Score = 45.8 bits (107), Expect = 1e-04 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 1/114 (0%) Frame = +1 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK P+ R RGIT+ + P +DCPGH Sbjct: 38869 DKSPEERARGITITASHIEYESP-------------------------NRHYAHIDCPGH 38973 Query: 97 ASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIG-QIACQKLVVVLNKID 149 I+ +I GA +D +LV+ G Q Q+ E +++ ++ ++V LNK+D Sbjct: 38974 QHYIKNMITGAAQMDGAILVVSAPDGPQEQTREHVILSREVGIPAIIVFLNKMD 39135 >scaffold_75 Length = 94647 Score = 64.3 bits (155), Expect = 3e-10 Identities = 69/253 (27%), Positives = 110/253 (43%), Gaps = 23/253 (9%) Frame = +3 Query: 94 PGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQKLVVVL-NKIDLL 151 PGH L+ T++ GA ++D +L+I + Q Q++E + +I K +++L NKIDL+ Sbjct: 74013 PGHDVLMATMLNGAAVMDAALLLIAGNESCPQPQTSEHIAAIEIMNLKNIIILQNKIDLV 74192 Query: 152 PEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPELIELLTS 211 E Q ++ K +Q T+ APIIP+ I + E + Sbjct: 74193 KEAAAQEQYGQILKFVQGTIAEN----APIIPI----------SAQMKYNIDVICEYIVK 74330 Query: 212 QISIPTRDPSGPFLMSVDHCFSIKGQGT--------VMTGTILSGSISLGDSVE------ 257 +I IP RD + M V F + G+ V G+IL G + LGD +E Sbjct: 74331 KIPIPLRDFTSDPHMIVIRSFDVNKPGSRVDEIKGGVAGGSILKGVLRLGDEIEVRPGVI 74510 Query: 258 -------IPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLH 310 I ++ K+ S+ + A+ G +G+ T+ DP L C + L Sbjct: 74511 SKELDGKIKCTPILSKIVSLFAEENELQYAVPGGLIGV-GTKIDPTL------CRADRL- 74666 Query: 311 TVHAALISVEKIP 323 V L SV K+P Sbjct: 74667 -VGQVLGSVGKLP 74702 >scaffold_337 Length = 35213 Score = 58.5 bits (140), Expect = 1e-08 Identities = 61/280 (21%), Positives = 113/280 (40%), Gaps = 13/280 (4%) Frame = -1 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 D+ + RERG+T+D+ F P ++TL+D PGH Sbjct: 15167 DEHDEERERGVTMDVCVRYFETP-------------------------HRKITLLDAPGH 15063 Query: 97 ASLIRTIIGGAQIIDLMMLVIDVTK------GMQTQSAECLVIGQIACQKLVVVLNKIDL 150 I +I G D+ +L+I+ + G L+ + +L+V +NK+D+ Sbjct: 15062 RDFIPNMISGTTQADVAVLLINANEFEAGFSGEGQTKEHALLAKSLGIMELIVAVNKMDM 14883 Query: 151 LPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPE------ 204 + K + D + ++ L + KF I V + + Sbjct: 14882 IEWNKER--YDYIVDTIKNFLVSAKFNEKNIRFVPISGYTGENLVDRKDPRLTKWYNGST 14709 Query: 205 LIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTV-MTGTILSGSISLGDSVEIPALKV 263 L++ + S S+ R + PF M+V + +G V + G I +G + +GD V I Sbjct: 14708 LVDYIDS-FSVGERLINKPFRMNVSDVYKSSTKGYVSVGGKIEAGLLGVGDKVLISPGSE 14532 Query: 264 VKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLV 303 V +K ++ + A+ GD + + + +P LL G++ Sbjct: 14531 VCSIKHIRRNNNESEWAVGGDNVDLSLVVENPALLRVGVI 14412 >scaffold_19 Length = 150554 Score = 48.5 bits (114), Expect = 1e-05 Identities = 49/251 (19%), Positives = 99/251 (39%), Gaps = 21/251 (8%) Frame = -2 Query: 96 HASLIRTIIGGAQII--DLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKIDLLPE 153 H +RT + G D M+ + G + E L I + +V+ KID PE Sbjct: 11182 HEKYLRTTLYGLTSTSPDFTMMAVGGNMGPNGMAKEHLGIALSLRIPVFIVVTKIDRAPE 11003 Query: 154 GKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIP---------E 204 + + ++K L+ R P++ +P E Sbjct: 11002 N----VLSSTMEDLKKILKGPGARKLPVVIRNQDDVVVAARNFVSERIVPIFTVSNVTGE 10835 Query: 205 LIELLTSQISI-PTRDP-----SGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEI 258 ++LL S +++ P + P + +D +++ G GTV++GT++ G+I GD++ I Sbjct: 10834 NLDLLRSFLNLLPAKKEWEILSQKPCQLDIDSIWNVSGVGTVVSGTVIKGTIETGDTLLI 10655 Query: 259 PALKVVK----KVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHA 314 ++ + ++KS+ +P+ G + + + + + +G+V S V Sbjct: 10654 GPNEIGEFIQTQIKSIHTKRLPVKRVKAGQTASLALKKIKKEQIRKGMVVVHPSTKPVPT 10475 Query: 315 ALISVEKIPYF 325 E + F Sbjct: 10474 REFEAELLVLF 10442 >scaffold_6 Length = 201738 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/66 (33%), Positives = 38/66 (57%) Frame = +1 Query: 90 LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKID 149 L+D PGH S G+ + DL +LVID+ G++ Q+ E + + ++ +V LNK+D Sbjct: 18094 LIDTPGHESFNNLRSRGSGLCDLAILVIDIMHGLEAQTIESINLLRMRKTPFIVALNKVD 18273 Query: 150 LLPEGK 155 + + K Sbjct: 18274 RIYDWK 18291 >scaffold_192 Length = 59409 Score = 37.0 bits (84), Expect = 0.044 Identities = 50/235 (21%), Positives = 92/235 (39%), Gaps = 18/235 (7%) Frame = +1 Query: 89 TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAE-------CLVIGQIACQKL 141 T++D PGH + +I GA D+ +LV+ KG + + I ++L Sbjct: 35503 TILDAPGHRLYVPNMIVGAAQADVGILVVSSKKGEFEAGVDGGQTVEHARLAKMIGLKQL 35682 Query: 142 VVVLNKID----LLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXX 197 V+ +NK+D + + ++K++ ++K N K + IP Sbjct: 35683 VIFVNKMDEPSVQWSKERYDEIVEKLSVHLKKCGWNLK-KDVQFIP-----GSGYGTLNV 35844 Query: 198 XXXXIPELIELLTSQISIPTRDPSGPFLMSVDHCF------SIKGQGTV-MTGTILSGSI 250 P + I T D P +++ S K +G V + G + SG+I Sbjct: 35845 KDPLKPGVCSWYNGPSLIGTLDNLPPIERNIEGALRIPITTSYKDRGIVNVIGKVESGTI 36024 Query: 251 SLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA 305 S+G S+ I K V S+ +A G+ + I + + ++ G + A Sbjct: 36025 SVGQSIHIMPGKYKVDVVSLTGDICSFKTARPGENITIALKGIEDDVIRPGSILA 36189 >scaffold_285 Length = 43506 Score = 36.2 bits (82), Expect = 0.075 Identities = 26/98 (26%), Positives = 43/98 (43%) Frame = +3 Query: 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLN 146 ++ +VD PGH + ++ID + + D G+Q QS + + +N Sbjct: 35535 RINIVDTPGHVDFTVEVERSVRVIDGSVAIFDGVAGVQAQSITVWNQSERYSVPRIAFIN 35714 Query: 147 KIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPV 184 K+D + A+IDK K M+ L GA IP+ Sbjct: 35715 KMD-----REGASIDKTLKMMKDRL------GANPIPI 35795 >scaffold_202 Length = 57938 Score = 36.2 bits (82), Expect = 0.075 Identities = 16/64 (25%), Positives = 33/64 (51%) Frame = -1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + ++D PGH + + + I D+ ++VID +G+ Q+ + + V++NK Sbjct: 48680 INILDTPGHPNFLDEVTASLAISDIGVVVIDALEGVMLQTERLIKHAVSEGLAICVIINK 48501 Query: 148 IDLL 151 +D L Sbjct: 48500 VDRL 48489 >scaffold_516 Length = 18146 Score = 35.8 bits (81), Expect = 0.099 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = +1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + +LV+D +G+Q Q+ + A +++ V+NK Sbjct: 1636 LNLIDTPGHVDFNYEVSRSLMACQGALLVVDAVQGVQAQTMANFYLALDAGLEVIPVINK 1815 Query: 148 IDL 150 IDL Sbjct: 1816 IDL 1824 >scaffold_39 Length = 122440 Score = 35.8 bits (81), Expect = 0.099 Identities = 20/64 (31%), Positives = 32/64 (50%) Frame = -1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + +I D ++++DV +G+ Q+ L K +VLNK Sbjct: 35050 INLIDSPGHVDFSSEVSTAVRITDGSLVLVDVVEGVCIQTHAVLKQAYQEKVKPCLVLNK 34871 Query: 148 IDLL 151 ID L Sbjct: 34870 IDRL 34859 >scaffold_413 Length = 27503 Score = 32.7 bits (73), Expect = 0.83 Identities = 16/62 (25%), Positives = 29/62 (46%) Frame = +2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + ++ D ++V+D +G Q+ L K V+ +NK Sbjct: 12641 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGCCVQTETVLRQAVAERIKPVLFVNK 12820 Query: 148 ID 149 +D Sbjct: 12821 VD 12826 >scaffold_272 Length = 44938 Score = 31.2 bits (69), Expect = 2.4 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIA-CQKLVVVLN 146 + L+D PGH L ++ G +I D + V+D +G + E +V I+ K + +N Sbjct: 13432 INLIDTPGHLDLKAQVVAGLRITDGSLFVVDGFEGF-SFGGESIVRPLISENNKPTLFIN 13608 Query: 147 KID 149 K+D Sbjct: 13609 KLD 13617 >scaffold_26 Length = 142204 Score = 30.4 bits (67), Expect = 4.1 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 335 FHITVGHETVMGRLMFFSPAPDNFDQEP 362 F+ +VG++T + L F P PDN QEP Sbjct: 115437 FNTSVGNQTPVS*LKVFIPLPDNIPQEP 115520 >scaffold_325 Length = 36547 Score = 29.6 bits (65), Expect = 7.1 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Frame = +3 Query: 98 SLIRTIIGGAQIIDLMMLVIDVTK--GMQTQSAECLVIGQIACQKLVVVLNKIDLLP 152 S R + + D+++ V+D G + E +++ + +K+V+VLNKIDL+P Sbjct: 4533 SFYREVKKVIEAADVIIQVLDARDPMGCRCLDIEKMILERYTNKKIVLVLNKIDLVP 4703 Database: genome.fa Posted date: Jan 16, 2009 12:50 PM Number of letters in database: 32,967,507 Number of sequences in database: 799 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,909,976 Number of Sequences: 799 Number of extensions: 201180 Number of successful extensions: 628 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 577 Number of HSP's gapped (non-prelim): 67 length of query: 596 length of database: 10,989,169 effective HSP length: 106 effective length of query: 490 effective length of database: 10,904,475 effective search space: 5343192750 effective search space used: 5343192750 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 64 (29.3 bits)