TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000092_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Drosophila melanogaster # Complete (511 letters) Database: genome.fa 9 sequences; 8,347,606 total letters Searching.........done Score E Sequences producing significant alignments: (bits) Value gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ct... 131 4e-31 gb|AAGK01000009.1| Theileria parva strain Muguga apicoplast, com... 112 1e-25 gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 ch... 73 2e-13 gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ct... 68 4e-12 gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 ch... 43 2e-04 gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ct... 41 5e-04 >gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ctg_531, whole genome shotgun sequence Length = 570487 Score = 131 bits (329), Expect = 4e-31 Identities = 94/300 (31%), Positives = 151/300 (50%), Gaps = 24/300 (8%) Frame = -2 Query: 4 NFNIGLLGHVDSGKTTLAKALSSISSTA---------AFDKNPQSVERGITLDLGFSGLL 54 + NIG +GHVD GKTTL AL+ + S+A + DK P+ +RGIT+ Sbjct: 176043 HLNIGTIGHVDHGKTTLTAALTKVCSSAGVGEYVPYDSIDKAPEERKRGITI-------- 175888 Query: 55 VDAPAHLP-QGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLI 113 H+ + ++ + VDCPGHA I+ +I GA +D +LVV A G QT E ++ Sbjct: 175887 --CATHVEYETDKRHYGHVDCPGHADYIKNMISGAAQMDGAILVVSAPDGPMPQTREHIL 175714 Query: 114 IG-ELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAKTLEATTF-GGQVPICAVSALQG 171 + ++ +L+V +NK+D+ + + LE + L + + L + G PI SA + Sbjct: 175713 LARQIGVPRLVVYLNKMDLLEDPE---LLELVELEIRELLSEHKYDGDSTPIVKGSATKA 175543 Query: 172 TH--------IAELREVLREAYFQPQRNLADPLFMYVDHCFGIKGQGTVCTGTLLQGKVQ 223 + I +L + E P+R PL + VD I G+GTV TG + QGK++ Sbjct: 175542 LNDDPESVQSIKDLLKACDEYLLTPERKADLPLLIAVDEVMSIPGKGTVVTGRVEQGKIR 175363 Query: 224 VNNVIEL---PALGEQRKVKSIQMFRKNVTSASMGDRIGLCVTQFNAKLLERG-IITQPG 279 + IE+ G++ V ++MFRK + GD++G+ + + RG +IT PG Sbjct: 175362 PGDAIEIIGGKKAGKKSTVVGLEMFRKTLDEGIAGDQVGILLKNVKKDDVSRGFVITCPG 175183 Score = 39.7 bits (91), Expect = 0.001 Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 38/222 (17%) Frame = -2 Query: 6 NIGLLGHVDSGKTTL-------AKALSSISST-------AAFDKNPQSVERGITLDLGFS 51 NIG+ H+DSGKTTL A + SI A D E+GIT+ + Sbjct: 398199 NIGISAHIDSGKTTLTERILFYAGKIDSIHEVRGTDGVGAKMDSMDLEREKGITIQSAVT 398020 Query: 52 GLLVDAP----------AHLPQGEQLQ--------------FTFVDCPGHASLIRTIIGG 87 + + ++ ++LQ +D PGH + Sbjct: 398019 NISWNTDISWNTNTPWNTNVTGVQRLQNSHSVGVSDPVDYSINIIDTPGHVDFTIEVERS 397840 Query: 88 AQIIDLMLLVVDAQKGKQTQTAECLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLR 147 +++D +L+V + G Q+QT + I+ +NK+D + + +++ Sbjct: 397839 LRVLDSAVLLVCSVSGVQSQTVTVFRQMDRYNIPRIIFLNKLD-----REGASVDRSIQM 397675 Query: 148 LAKTLEATTFGGQVPICAVSALQGTHIAELREVLREAYFQPQ 189 L + L Q+PI L+G I +L E ++ YF+ Q Sbjct: 397674 LQRKLGVNLLQLQIPIGIGPKLEG--IIDLVE-MKAYYFRGQ 397558 Score = 28.1 bits (61), Expect = 4.5 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Frame = +2 Query: 279 GYLKPIYAVCLQFKPIRYYKEVIKSMRK---MHISVGH 313 GYLKP+ +VC+ I YY + K MH+ H Sbjct: 447329 GYLKPLASVCILIVLISYYFHQASELGKYNEMHLMFSH 447442 >gb|AAGK01000009.1| Theileria parva strain Muguga apicoplast, complete genome, whole genome shotgun sequence Length = 39579 Score = 112 bits (281), Expect = 1e-25 Identities = 88/307 (28%), Positives = 148/307 (48%), Gaps = 30/307 (9%) Frame = +1 Query: 6 NIGLLGHVDSGKTTLAKALSSIS----------STAAFDKNPQSVERGITLDLGFSGLLV 55 NIG +GHVD GKTTL A++S+ S D + +RGIT++ Sbjct: 14395 NIGTIGHVDHGKTTLTSAITSVLKLKGCTEKSYSYEDIDSTKEEKKRGITINT------- 14553 Query: 56 DAPAHLPQGEQLQ-FTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLII 114 H+ L+ + +DCPGHA I+ +I GA +D +LV+ + G QT E L++ Sbjct: 14554 ---THVEYESDLRHYAHIDCPGHADYIKNMIIGAVQMDGAILVISLEDGPMPQTIEHLLL 14724 Query: 115 GELLQ-KKLIVVINKIDVYPENQRASKL-EKLRLRLAKTLEATTFGGQVPICAVSALQG- 171 + + KKL+V +NK D + + + E+ + L K +T + A+ AL+ Sbjct: 14725 AKQIGIKKLVVFLNKEDKVDDEEIIFFIKEETKSMLDKYGFDSTLTPLITGSALKALEEI 14904 Query: 172 -------------THIAELREVLREAYFQPQRNLADPLFMYVDHCFGIKGQGTVCTGTLL 218 + + L + + +P+RNL P M ++ F I G+GTV TG + Sbjct: 14905 KLLKEIDLNNKWISKVINLIDTVDSYIEKPERNLNKPFLMPIEDSFYITGRGTVVTGRIE 15084 Query: 219 QGKVQVNNVIELPALGEQR--KVKSIQMFRKNVTSASMGDRIGLCVTQFNAKLLERG-II 275 G V++N+ +EL + + V I+MF K ++ GD +GL + + ++RG ++ Sbjct: 15085 NGIVKLNDKVELYGYDKSKLTSVIGIEMFNKGLSQGESGDNVGLLLRGIIKEDVKRGHVV 15264 Query: 276 TQPGYLK 282 +P LK Sbjct: 15265 AKPKSLK 15285 >gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 chr1_complete, whole genome shotgun sequence Length = 2540030 Score = 72.8 bits (177), Expect = 2e-13 Identities = 80/315 (25%), Positives = 130/315 (41%), Gaps = 45/315 (14%) Frame = -3 Query: 4 NFNIGLLGHVDSGKTTLAKAL------------------------SSISSTAAFDKNPQS 39 + N+ ++GHVDSGK+T L S DK Sbjct: 1542669 HINLVVIGHVDSGKSTTTGHLIYKLGGIDKRTIEKFEKESADMGKGSFKYAWVLDKLKNE 1542490 Query: 40 VERGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVD 99 ERGIT+D+ + + +T +D PGH I+ +I G D+ +LVV Sbjct: 1542489 RERGITIDITLWKF---------ETGKYYYTVIDAPGHRDFIKNMITGTSQADVAMLVVP 1542337 Query: 100 AQKG-------KQTQTAE-CLIIGELLQKKLIVVINKIDV--YPENQRASKLEKLRLRLA 149 A+ G K+ QT E L+ L K++I INK+D Y E+ R ++++K Sbjct: 1542336 AESGGFEAAFSKEGQTREHALLAFTLGVKQMICAINKMDKCDYKED-RYNEIQKEVCGYL 1542160 Query: 150 KTLEATTFGGQVPICAVSALQGTHIAELRE--------VLREA---YFQPQRNLADPLFM 198 K + +VP +S G ++ + + +L EA P+R + PL + Sbjct: 1542159 KKIGYNV--EKVPFVPISGFLGDNMIDKSDKMPWYKGKILVEALDLMEPPKRPVDKPLRL 1541986 Query: 199 YVDHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVTSASMGDRI 258 + + I G GTV G + G+++ VI + KS++M + V A GD + Sbjct: 1541985 PIQAVYKIGGIGTVPVGRVETGQLKAGMVITFAPSQITTECKSVEMHHEVVEVALPGDNV 1541806 Query: 259 GLCVTQFNAKLLERG 273 G V + + G Sbjct: 1541805 GFNVKNVSTSDIRAG 1541761 Score = 54.3 bits (129), Expect = 6e-08 Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 17/142 (11%) Frame = +3 Query: 6 NIGLLGHVDSGKTTLAKALSS----ISSTAA-----FDKNPQSVERGITLDLGFSGLLVD 56 N+ L HVD GKTTL+ +L S IS + D R IT+ LL Sbjct: 2237844 NVCFLAHVDHGKTTLSDSLISSVGIISEKLSGKLRYLDNRDDEQRRMITIKSSSISLLYS 2238023 Query: 57 APAHL--------PQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQT 108 H P+ +++ +D PGH + A++ D LLVVD +G QT Sbjct: 2238024 KYEHFNDNSNSSSPKNDKVLINLIDSPGHVDFSIEVSTAARLCDGALLVVDVVEGICPQT 2238203 Query: 109 AECLIIGELLQKKLIVVINKID 130 L L K ++++NKID Sbjct: 2238204 RAVLRQAWLENVKTVLILNKID 2238269 Score = 53.1 bits (126), Expect = 1e-07 Identities = 26/85 (30%), Positives = 55/85 (64%), Gaps = 2/85 (2%) Frame = +2 Query: 70 TFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKG-KQTQTAECLIIGELLQ-KKLIVVIN 127 +FVDCPGH L+ T++ GA ++D LL++ + Q QT+E L E+++ K ++++ N Sbjct: 686771 SFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMRLKNILILQN 686950 Query: 128 KIDVYPENQRASKLEKLRLRLAKTL 152 K+++ E+Q + ++++ ++ T+ Sbjct: 686951 KVELIKESQALLRQQEIKKFISGTI 687025 Score = 43.9 bits (102), Expect = 8e-05 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 14/139 (10%) Frame = -1 Query: 6 NIGLLGHVDSGKTTLAKALSSISSTAAF---------DKNPQSVERGITLDLGFSGLLVD 56 N+ ++ HVD GK+TL +L S + A D ER IT+ +G+ + Sbjct: 1101656 NMSVIAHVDHGKSTLTDSLVSKAGIIAAKNAGDARFTDTRADEQERCITIKS--TGISMY 1101483 Query: 57 APAHLPQGEQLQ---FTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLI 113 L G+ +Q +D PGH + ++ D L+VVD +G QT + Sbjct: 1101482 FEHDLDDGKGVQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE--TV 1101309 Query: 114 IGELLQKKL--IVVINKID 130 + + L +++ ++ +NK+D Sbjct: 1101308 LRQALSERIRPVLHVNKVD 1101252 Score = 33.9 bits (76), Expect = 0.081 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = +3 Query: 5 FNIGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITLDLG 49 F +G +GHV GK+T+ KALS + + + ER IT+ LG Sbjct: 686388 FCLGTIGHVAHGKSTVVKALSGVHTV----RFKHEKERNITIKLG 686510 Score = 28.9 bits (63), Expect = 2.6 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = +2 Query: 95 LLVVDAQKGKQTQTAECLIIGELLQKKLIVVINKIDV 131 +LVVD KG + QT I K++ V+NKID+ Sbjct: 2156987 VLVVDGTKGIEAQTVTTANIAIEKGLKIVPVVNKIDI 2157097 Score = 28.1 bits (61), Expect = 4.5 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -3 Query: 354 DVIYALLQFESPVLSPPHSTLIASKLDMDVHSTS 387 D +YA L F P+ P ++ L A L ++ STS Sbjct: 1464342 DKLYADLTFYGPLTGPTYAMLTAGHLSSEIKSTS 1464241 >gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ctg_530, whole genome shotgun sequence Length = 1317241 Score = 68.2 bits (165), Expect = 4e-12 Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 7/229 (3%) Frame = -1 Query: 7 IGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITLDLGFSGLLVDAPAHLPQGEQ 66 + ++GHVD GKTTL L I+ T + + E+G + S V P Sbjct: 384301 VTVMGHVDHGKTTL---LDYINKT-----DVANTEKGF-ITQKISAFQVSLNPTSPSSPS 384149 Query: 67 LQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELLQKKLIVVI 126 + TF+D PGHA+ + G DL++LVV A G QT EC+ + + ++I I Sbjct: 384148 -KITFIDTPGHAAFLTMRERGVSCTDLVILVVAADDGVMPQTLECIDLIKRFNLRVIAAI 383972 Query: 127 NKIDVYPENQRASKLEKLRLRLAKTLEATTFGGQVPICA-----VSALQGTHIAELREVL 181 NK+D+ PE + + L+ L + G VPI A V L G E++++ Sbjct: 383971 NKVDLTPEESISQVSKTLKSHLVN----SNLLGIVPISAKTGHNVDKLMG----EIQKIQ 383816 Query: 182 REAYFQPQRNLADPLFMY--VDHCFGIKGQGTVCTGTLLQGKVQVNNVI 228 E + +N ++Y + H +G + + QG +Q N+ I Sbjct: 383815 SEMNLRTDKNAIFKGYVYETIHH----PTRGKLINILVQQGTIQQNDYI 383681 Score = 42.7 bits (99), Expect = 2e-04 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 5/109 (4%) Frame = +1 Query: 6 NIGLLGHVDSGKTTLAKAL-----SSISSTAAFDKNPQSVERGITLDLGFSGLLVDAPAH 60 N+ ++ HVD GKTTL +S T D + ERGIT+ + + ++ Sbjct: 572905 NVAVVAHVDHGKTTLVDQFLKYTGGKLSHTRIMDSHELERERGITILSKVTRINLN---- 573072 Query: 61 LPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTA 109 +D PGH+ + I+D + L+VD +G + QT+ Sbjct: 573073 -----NYTLNIIDTPGHSDFGGEVERILNIVDCVCLLVDVVEGPKAQTS 573204 >gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 chr2_complete, whole genome shotgun sequence Length = 1971884 Score = 42.7 bits (99), Expect = 2e-04 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 28/138 (20%) Frame = +1 Query: 72 VDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELLQKKLIVVINKID- 130 +D PGH S G+ + D+ +LVVD G + QT E + + + + I+ +NKID Sbjct: 373873 IDTPGHESFNNLRARGSSLCDIAILVVDIMHGLEPQTIESINLLKARKCYFIIALNKIDR 374052 Query: 131 VY--------------------PENQRASKLEKLRLRLAKT-------LEATTFGGQVPI 163 +Y +N+ + + +++ L L++ E V I Sbjct: 374053 IYNWSSTPWQTFRESFAKQPKESQNEFSDRTKQIMLELSENGLNSSLYWENDNIKKNVSI 374232 Query: 164 CAVSALQGTHIAELREVL 181 C SA+ G I++L +L Sbjct: 374233 CPTSAITGEGISDLLYLL 374286 Score = 28.1 bits (61), Expect = 4.5 Identities = 15/68 (22%), Positives = 28/68 (41%) Frame = +1 Query: 296 YYKEVIKSMRKMHISVGHNTVMANVTLFRDTDGTTSTFQLDKEYEYMEDVQPAEVQHNDV 355 YY +++ + G + N T+ D TTST++ E + P + Sbjct: 1902910 YYSQLLNQKKYKSFFGGSSIPSLNTTICNSADSTTSTYESPDETDEKNFQLPDSDSESVA 1903089 Query: 356 IYALLQFE 363 I+ L++E Sbjct: 1903090 IFVGLEYE 1903113 >gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ctg_529, whole genome shotgun sequence Length = 1835834 Score = 41.2 bits (95), Expect = 5e-04 Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 34/205 (16%) Frame = +3 Query: 6 NIGLLGHVDSGKTTLA-----------KALSSISSTA-AFDKNPQSVERGITLDLGFSGL 53 N+ +LG VD+GK+TL K L ++ + D+ +RGIT+D Sbjct: 1208526 NVVVLGAVDAGKSTLLGHFLTLTNCVDKKLKNVKHLSWILDQGDDERDRGITIDPTKCQF 1208705 Query: 54 LVD---------------APAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVV 98 +D P + ++ +D PGH LI+ ++ GA + +++V Sbjct: 1208706 NLDLKNIKNLNNHNSEHQTKIETPIYDSIKVNVIDTPGHHDLIQNLVMGAVFANSAVIIV 1208885 Query: 99 DAQKGKQTQ------TAECLIIGELLQKKLIVVINKIDVYPENQRA-SKLEKLRLRLAKT 151 D+ ++ + L++ L + +I+ +NKID + ++ SK+ + +L Sbjct: 1208886 DSNDVLKSDFFGVYFSEHMLLLYLLGIRYIIICVNKIDRFEYSESMYSKVVHIIRKLVGV 1209065 Query: 152 LEATTFGGQVPICAVSALQGTHIAE 176 E + ++ VS L+G ++ + Sbjct: 1209066 YENSV---KLIFLPVSGLRGDNLVD 1209131 Score = 35.0 bits (79), Expect = 0.036 Identities = 14/37 (37%), Positives = 24/37 (64%) Frame = -2 Query: 68 QFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGK 104 +FT +D PGH + + +I GA D +L++ A+KG+ Sbjct: 1023142 RFTILDAPGHRNYVPNMIDGATQADCGVLIISARKGE 1023032 Score = 34.7 bits (78), Expect = 0.048 Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 22/147 (14%) Frame = -2 Query: 6 NIGLLGHVDSGKTTLAKALSSIS--STAAFD--KNPQSVE---------------RGITL 46 NI + G GKTTL L S + + D KNP+ + + Sbjct: 304603 NICICGGFHDGKTTLIDRLIEFSRYQSTSLDTRKNPEFTRYTDSRLDEQARELSIKSTPI 304424 Query: 47 DLGFSGLL---VDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKG 103 L F L ++ + P+ + F D PGH + + + I D +LV+D G Sbjct: 304423 SLIFQNTLYENINDVSEFPKSKSYLFNIFDTPGHVNFMDEFVHALAICDGCVLVIDVLMG 304244 Query: 104 KQTQTAECLIIGELLQKKLIVVINKID 130 + T + + Q + +V+N ID Sbjct: 304243 LTSVTEQIIRQCVHDQVHMCLVLNCID 304163 Score = 31.2 bits (69), Expect = 0.53 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 10/105 (9%) Frame = +1 Query: 55 VDAPAHLPQGEQLQF-----TFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTA 109 + P P EQL T D GH + R +D ++ +VDA + Q Sbjct: 1080367 IHTPTLHPHSEQLSLEKVNITAFDLGGHETARRVWKQYCGNVDGIVFIVDASDRSRFQET 1080546 Query: 110 E-----CLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLA 149 L ELL K +V+ NKID N+ A+ E+LR L+ Sbjct: 1080547 NEELRSLLADEELLNKPFVVLGNKID----NRGAASEEELRTALS 1080669 Score = 28.9 bits (63), Expect = 2.6 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = -2 Query: 415 IFKRKQKVGSIQRVVNSSEVI 435 +F RK K GS++ V+NSS VI Sbjct: 970867 VFGRKDKAGSVESVLNSSSVI 970805 Database: genome.fa Posted date: Jan 19, 2010 5:27 PM Number of letters in database: 8,347,606 Number of sequences in database: 9 Lambda K H 0.320 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,736,885 Number of Sequences: 9 Number of extensions: 49069 Number of successful extensions: 210 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 118 Number of HSP's gapped (non-prelim): 154 length of query: 511 length of database: 2,782,535 effective HSP length: 95 effective length of query: 416 effective length of database: 2,781,680 effective search space: 1157178880 effective search space used: 1157178880 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.9 bits)