TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000092_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Drosophila melanogaster # Complete (511 letters) Database: genome.fa 218 sequences; 41,633,360 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_16 101 2e-21 scaffold_9 70 4e-12 scaffold_28 42 0.001 scaffold_4 39 0.009 scaffold_3 38 0.027 scaffold_37 37 0.036 scaffold_15 37 0.046 scaffold_13 37 0.046 scaffold_6 32 1.1 >scaffold_16 Length = 929013 Score = 101 bits (251), Expect = 2e-21 Identities = 68/171 (39%), Positives = 81/171 (47%), Gaps = 71/171 (41%) Frame = -3 Query: 58 PAHL-----PQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGK-------- 104 P+HL P E LQ T VDCPGHASLI+TIIGGAQIIDLM+LV+D QKG Sbjct: 536209 PSHLCVATVPGKELLQVTLVDCPGHASLIKTIIGGAQIIDLMMLVIDVQKGTMCCVLFSL 536030 Query: 105 -----------------------QTQTAECLIIGELLQKKL------------------- 122 QTQTAECLIIGE+ +L Sbjct: 536029 NGAIAAADARQRPPLRIPCTVGIQTQTAECLIIGEITCDRLVRRPGVGSGLTFLGCRCPY 535850 Query: 123 ----------------IVVINKIDVYPENQRASKLEKLRLRLAKTLEATTF 157 +VVINK+D+ PE R ++EK++LRLAKT T F Sbjct: 535849 RECS*SLGTSPCACG*VVVINKVDMLPEGDREKQIEKMKLRLAKTFAQTRF 535697 Score = 85.5 bits (210), Expect(2) = 1e-20 Identities = 48/131 (36%), Positives = 70/131 (53%), Gaps = 40/131 (30%) Frame = -1 Query: 236 QRKVKSIQMFRKNVTSASMGDRIGLCVTQFNAKLLERGIITQPGYLKPI----------- 284 QRKVKS+QMF++ VTSA GDR+G+CVTQF+A +ERGI+ PG ++ + Sbjct: 535041 QRKVKSMQMFKRPVTSAVQGDRLGICVTQFDASSMERGILAAPGSMRAVTGAQDFFFF*I 534862 Query: 285 ------------------YAVCLQFKP-----------IRYYKEVIKSMRKMHISVGHNT 315 YA + F+ IR+YK+ + S K+H+SVGH+T Sbjct: 534861 HISPPFFCLLKGCCASQTYASPMLFRAMSIAAVAAVRRIRFYKQALSSRTKIHVSVGHHT 534682 Query: 316 VMANVTLFRDT 326 ++A V F+ T Sbjct: 534681 LLATVLFFKST 534649 Score = 65.5 bits (158), Expect = 1e-10 Identities = 38/80 (47%), Positives = 45/80 (56%), Gaps = 31/80 (38%) Frame = -3 Query: 3 INFNIGLLGHVDSGKTTL-------------------------------AKALSSISSTA 31 +N N+G+LGHVDSGKT+L AKALS+++STA Sbjct: 536716 LNLNVGVLGHVDSGKTSLGTRRIWLCHLIC*ATSDASCPHSVLSSPL*KAKALSTVASTA 536537 Query: 32 AFDKNPQSVERGITLDLGFS 51 AFDKNPQS RGITLDLG S Sbjct: 536536 AFDKNPQSKARGITLDLGMS 536477 Score = 34.7 bits (78), Expect = 0.23 Identities = 19/48 (39%), Positives = 24/48 (50%) Frame = -1 Query: 162 PICAVSALQGTHIAELREVLREAYFQPQRNLADPLFMYVDHCFGIKGQ 209 P CA + I L + L +A +P R + P VDHCF IKGQ Sbjct: 535506 PNCAPGSGSPQGIENLMDQLVQALPRPARQVDGPFQFAVDHCFPIKGQ 535363 Score = 34.7 bits (78), Expect(2) = 2e-05 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = -1 Query: 427 RVVNSSEVIVQNLF-KDAKRDLYVGKNVELSTGEKGRIERTFGQTSKVAITFQDALS 482 RV + ++ +++F K+ + + K + LSTG+ G IE FGQ+ K + + LS Sbjct: 533913 RVHDDYTLVCRDMFTKETDMNKFAYKPITLSTGDTGMIEGAFGQSGKFKVRLDEPLS 533743 Score = 33.9 bits (76), Expect(2) = 1e-20 Identities = 14/25 (56%), Positives = 22/25 (88%) Frame = -2 Query: 209 QGTVCTGTLLQGKVQVNNVIELPAL 233 QGTV TGT+ +G+V+V+++IE+P L Sbjct: 535220 QGTVLTGTITRGRVKVDDMIEVPHL 535146 Score = 32.7 bits (73), Expect(2) = 2e-05 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = -2 Query: 386 TSCRLAFWGRIAWQTHSSKYFQEELPKLRIFKRKQKVGSIQRVV 429 T CRLAF GR+ T + LP +R+++ + + G+++R V Sbjct: 534149 TQCRLAFHGRLHAITSEADPRTSWLPSIRVYRDRVREGTVERSV 534018 >scaffold_9 Length = 1303534 Score = 70.5 bits (171), Expect = 4e-12 Identities = 87/340 (25%), Positives = 135/340 (39%), Gaps = 73/340 (21%) Frame = -1 Query: 6 NIGLLGHVDSGKTTL----------------------AKALSSISSTAAF--DKNPQSVE 41 +I + GHVD+GK+T A+ L S AF D+ + E Sbjct: 435262 SIVICGHVDAGKSTTTGRLIFELGGIPEREMQKLKDEAERLGKGSFAFAFYMDRQKEERE 435083 Query: 42 RGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQ 101 RG+T+ A H +T +D PGH I+ +I GA D+ LL+V Sbjct: 435082 RGVTIACTTKEFFT-ATKH--------YTVIDAPGHRDFIKNMITGASQADVALLMVPCD 434930 Query: 102 --------KGK------QTQTAECLIIGELLQ-KKLIVVINKIDVYPENQRASKLEKLRL 146 KG Q QT + ++ LL K+LIV NK+D ++ +++R Sbjct: 434929 GNFTAAIAKGNHKAGEVQGQTRQHAVLINLLGVKQLIVGCNKMDCDVAGYGEARFKEVRD 434750 Query: 147 RLAKTL-----EATTFGGQVPICAVSALQGT------------------------HIAEL 177 + L + + VP+ +S +G HI L Sbjct: 434749 EMVHMLIKVGWKKSFVEESVPVLPISGWKGDNLITKTTNMSWWNGVDVKVDSETIHIDCL 434570 Query: 178 REVLREAYFQPQRNLADPLFMYVDHCFGIKGQGTVCTGTLLQGKVQV-NNVIELPALGEQ 236 ++ L + PQR P+ + F IKG G V TG + QG V+ + V+ LP Sbjct: 434569 QDALEKMVRVPQRATDKPMRTPISGVFKIKGVGDVLTGRVEQGTVKPGDEVVFLPTHTSS 434390 Query: 237 R----KVKSIQMFRKNVTSASMGDRIGLCVTQFNAKLLER 272 KV +++M K+V +A GD +GL + N + R Sbjct: 434389 TACTGKVFTVEMHHKSVEAAMTGDNVGLNIKGLNKDNMPR 434270 Score = 35.4 bits (80), Expect = 0.14 Identities = 19/64 (29%), Positives = 31/64 (48%) Frame = +3 Query: 66 QLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELLQKKLIVV 125 +L +DCPGH + ++ D L+VVDA +G QT L + ++V Sbjct: 372495 KLVVNLIDCPGHVDFSGEVTASLRLADGALVVVDAIEGVGVQTETVLRQALAEGVRPVLV 372674 Query: 126 INKI 129 +NK+ Sbjct: 372675 LNKV 372686 >scaffold_28 Length = 614053 Score = 42.4 bits (98), Expect = 0.001 Identities = 35/141 (24%), Positives = 53/141 (37%), Gaps = 16/141 (11%) Frame = +1 Query: 6 NIGLLGHVDSGKTTLAKALSS---------ISSTAAFDKNPQSVERGITLDLGFSGLLVD 56 N+ ++ HVD GK+TL +L S T D +R IT+ L + Sbjct: 419581 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRQDEQDRCITIKSTAISLYYE 419760 Query: 57 APAH-------LPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTA 109 G +D PGH + ++ D L+VVDA G QT Sbjct: 419761 LAEEDMKWVKQTSDGNAFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDAVSGVCVQTE 419940 Query: 110 ECLIIGELLQKKLIVVINKID 130 L + K ++ +NK+D Sbjct: 419941 TVLRQAIAERIKPVLFLNKMD 420003 >scaffold_4 Length = 2081438 Score = 39.3 bits (90), Expect = 0.009 Identities = 18/59 (30%), Positives = 32/59 (54%) Frame = -3 Query: 72 VDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELLQKKLIVVINKID 130 +D PGH + G+ + ++ +LVVD G + QTAE + + + I+ +NK+D Sbjct: 1391268 IDTPGHEAFSNLRSRGSSLCNIAILVVDIMHGIEPQTAESIELLRRRKAPFIIALNKVD 1391092 >scaffold_3 Length = 2609234 Score = 37.7 bits (86), Expect = 0.027 Identities = 19/49 (38%), Positives = 27/49 (55%) Frame = +1 Query: 64 GEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECL 112 G+ + TF+D PGHA+ GA D+++LVV A G QT E + Sbjct: 2543542 GDAQRITFLDTPGHAAFSAMRQRGASATDVVILVVAADDGVMPQTIESI 2543688 Score = 30.8 bits (68), Expect = 3.3 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = -3 Query: 42 RGITLDLGFSGLLVDAPAHLP-QGEQLQFTFVDCPGHASLIRTIIGGA 88 RGIT+ + AH+ Q E + +DCPGHA I+ +I GA Sbjct: 70461 RGITI----------STAHVEYQTENRHYAHMDCPGHADYIKNMITGA 70348 Score = 30.4 bits (67), Expect = 4.4 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = -2 Query: 6 NIGLLGHVDSGKTTLAKALS 25 NIG +GHVD GKT+L A++ Sbjct: 70780 NIGTIGHVDHGKTSLTAAIT 70721 >scaffold_37 Length = 404957 Score = 37.4 bits (85), Expect = 0.036 Identities = 18/68 (26%), Positives = 34/68 (50%) Frame = +1 Query: 63 QGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELLQKKL 122 +G+ +D PGH I + ++ D +++VVDA +G T + L + + Sbjct: 284734 RGKSHLVNVMDTPGHVDFIDEVTAAVRLADGVVVVVDAVEGVMLNTHRVIKQAALARVPI 284913 Query: 123 IVVINKID 130 ++INK+D Sbjct: 284914 TLIINKVD 284937 >scaffold_15 Length = 1049915 Score = 37.0 bits (84), Expect = 0.046 Identities = 14/29 (48%), Positives = 22/29 (75%) Frame = +2 Query: 70 TFVDCPGHASLIRTIIGGAQIIDLMLLVV 98 +FVDCPGH L+ T++ GA ++D LL++ Sbjct: 39689 SFVDCPGHDILMATMLNGAAVMDAALLLI 39775 Score = 29.6 bits (65), Expect = 7.4 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%) Frame = -3 Query: 6 NIGLLGHVDSGKTT---LAKALSSISSTAAFDKNPQSVERGITLDLGFSGLLVDAPAHLP 62 N+G++ H+D+GKTT L++ SSI QS+ +TL L + APAH P Sbjct: 264834 NVGIVAHIDAGKTTTCVLSEPCSSIW---------QSLWNLLTL------L*LSAPAHGP 264700 Query: 63 QG 64 G Sbjct: 264699 AG 264694 >scaffold_13 Length = 1102880 Score = 37.0 bits (84), Expect = 0.046 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = -3 Query: 161 VPICAVSALQGTHIAELREVLR-----EAYFQPQRNLADPLFMYVDHCFGIKGQGTVCTG 215 +PI +S + G ++ L+ +L ++ LADPL +V F + G V G Sbjct: 694218 IPILLLSCVTGQNLDHLKHMLNMLPTDSGKRHARQRLADPL-CHVQETFDVPDTGLVVGG 694042 Query: 216 TLLQGKVQVNNVIEL 230 L+QG+VQV +++ L Sbjct: 694041 ELIQGRVQVGDLLFL 693997 >scaffold_6 Length = 1473069 Score = 32.3 bits (72), Expect = 1.1 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -3 Query: 65 EQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLV 97 E FT +D PGH S + +I GA D+ +LV Sbjct: 1005649 ENKHFTVIDAPGHKSFVPNMISGAAQADVAVLV 1005551 Database: genome.fa Posted date: Jan 19, 2010 5:06 PM Number of letters in database: 41,633,360 Number of sequences in database: 218 Lambda K H 0.320 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,517,209 Number of Sequences: 218 Number of extensions: 344187 Number of successful extensions: 1544 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 1229 Number of HSP's gapped (non-prelim): 754 length of query: 511 length of database: 13,877,786 effective HSP length: 106 effective length of query: 405 effective length of database: 13,854,678 effective search space: 5611144590 effective search space used: 5611144590 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 64 (29.3 bits)