TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000085_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Caenorhabditis elegans # Complete (500 letters) Database: genome.fa 9 sequences; 8,347,606 total letters Searching.........done Score E Sequences producing significant alignments: (bits) Value gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ct... 102 1e-22 gb|AAGK01000009.1| Theileria parva strain Muguga apicoplast, com... 101 4e-22 gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ct... 55 4e-08 gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 ch... 55 4e-08 gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 ch... 46 2e-05 gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ct... 33 0.10 >gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ctg_531, whole genome shotgun sequence Length = 570487 Score = 102 bits (255), Expect = 1e-22 Identities = 70/232 (30%), Positives = 115/232 (49%), Gaps = 10/232 (4%) Frame = -2 Query: 14 LNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGI----RRNTLDLGFSTMTSL 69 LN+G +GHVD GKTTLT + ++ S++ + + D +R Sbjct: 176040 LNIGTIGHVDHGKTTLTAALTKVCSSAGVGEYVPYDSIDKAPEERKRGITICATHVEYET 175861 Query: 70 SGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVI 129 R +DCPGH+ I+ +++ + D AI+++ G PQT EH+LLA + R++ Sbjct: 175860 DKRHYGHVDCPGHADYIKNMISGAAQMDGAILVVSAPDGPMPQTREHILLARQIGVPRLV 175681 Query: 130 IVLNKCD-LXXXXXXXXXXXXVRKGLKSMGVD-ENSPIVEMS----LADGYFKEEMLQNL 183 + LNK D L +R+ L D +++PIV+ S L D + +++L Sbjct: 175680 VYLNKMDLLEDPELLELVELEIRELLSEHKYDGDSTPIVKGSATKALNDDPESVQSIKDL 175501 Query: 184 KLAIESRIFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIE 235 A + + P+R + LIA+D +I G+GTV+TG V +G +R IE Sbjct: 175500 LKACDEYLLTPERKADLPLLIAVDEVMSIPGKGTVVTGRVEQGKIRPGDAIE 175345 Score = 44.3 bits (103), Expect = 6e-05 Identities = 46/167 (27%), Positives = 64/167 (38%), Gaps = 45/167 (26%) Frame = -2 Query: 15 NLGILGHVDSGKTTLTRRIA----------ELGSTSAFDAHATS---------------- 48 N+GI H+DSGKTTLT RI E+ T A S Sbjct: 398199 NIGISAHIDSGKTTLTERILFYAGKIDSIHEVRGTDGVGAKMDSMDLEREKGITIQSAVT 398020 Query: 49 -----------------TTTDGIRR--NTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAV 89 T G++R N+ +G S S + +ID PGH V Sbjct: 398019 NISWNTDISWNTNTPWNTNVTGVQRLQNSHSVGVSDPVDYS---INIIDTPGHVDFTIEV 397849 Query: 90 LAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLNKCD 136 + V D A++++ V+G+Q QT ++ R II LNK D Sbjct: 397848 ERSLRVLDSAVLLVCSVSGVQSQTVTVFRQMDRYNIPR-IIFLNKLD 397711 >gb|AAGK01000009.1| Theileria parva strain Muguga apicoplast, complete genome, whole genome shotgun sequence Length = 39579 Score = 101 bits (251), Expect = 4e-22 Identities = 70/242 (28%), Positives = 121/242 (50%), Gaps = 20/242 (8%) Frame = +1 Query: 14 LNLGILGHVDSGKTTLTRRIAEL----GSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSL 69 +N+G +GHVD GKTTLT I + G T ++ +T ++ + + + + Sbjct: 14392 VNIGTIGHVDHGKTTLTSAITSVLKLKGCTEKSYSYEDIDSTKEEKKRGITINTTHVEYE 14571 Query: 70 SG-RRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRV 128 S R A IDCPGH+ I+ ++ + D AI++I + G PQT EHLLLA + ++ Sbjct: 14572 SDLRHYAHIDCPGHADYIKNMIIGAVQMDGAILVISLEDGPMPQTIEHLLLAKQIGIKKL 14751 Query: 129 IIVLNKCD-LXXXXXXXXXXXXVRKGLKSMGVDEN-SPIVEMSLADGYFKEEMLQNLKL- 185 ++ LNK D + + L G D +P++ S + ++L+ + L Sbjct: 14752 VVFLNKEDKVDDEEIIFFIKEETKSMLDKYGFDSTLTPLITGSALKALEEIKLLKEIDLN 14931 Query: 186 ------------AIESRIFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTE 233 ++S I +P+R+ FL+ I+ F I G+GTV+TG + G+++LN + Sbjct: 14932 NKWISKVINLIDTVDSYIEKPERNLNKPFLMPIEDSFYITGRGTVVTGRIENGIVKLNDK 15111 Query: 234 IE 235 +E Sbjct: 15112 VE 15117 >gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ctg_530, whole genome shotgun sequence Length = 1317241 Score = 54.7 bits (130), Expect = 4e-08 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 1/173 (0%) Frame = -1 Query: 13 PLNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSGR 72 PL + ++GHVD GKTTL I + + T + + + + + S Sbjct: 384310 PLVVTVMGHVDHGKTTLLDYINKTDVANTEKGFITQ------KISAFQVSLNPTSPSSPS 384149 Query: 73 RLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVL 132 ++ ID PGH+ + + D+ I+++ G+ PQT E + L +F RVI + Sbjct: 384148 KITFIDTPGHAAFLTMRERGVSCTDLVILVVAADDGVMPQTLECIDLIKRF-NLRVIAAI 383972 Query: 133 NKCDLXXXXXXXXXXXXVRKGLKSMGVDEN-SPIVEMSLADGYFKEEMLQNLK 184 NK DL V K LKS V+ N IV +S G+ ++++ ++ Sbjct: 383971 NKVDL----TPEESISQVSKTLKSHLVNSNLLGIVPISAKTGHNVDKLMGEIQ 383825 Score = 48.5 bits (114), Expect = 3e-06 Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%) Frame = +1 Query: 15 NLGILGHVDSGKTTLTRRI-----AELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSL 69 N+ ++ HVD GKTTL + +L T D+H R L T +L Sbjct: 572905 NVAVVAHVDHGKTTLVDQFLKYTGGKLSHTRIMDSHELER-----ERGITILSKVTRINL 573069 Query: 70 SGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKF--CPNR 127 + L +ID PGHS V + D +++DVV G + QT+ L A + PN Sbjct: 573070 NNYTLNIIDTPGHSDFGGEVERILNIVDCVCLLVDVVEGPKAQTSFVLRKALEVF*LPNL 573249 Query: 128 VII 130 +II Sbjct: 573250 III 573258 >gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 chr1_complete, whole genome shotgun sequence Length = 2540030 Score = 54.7 bits (130), Expect = 4e-08 Identities = 68/282 (24%), Positives = 111/282 (39%), Gaps = 46/282 (16%) Frame = -3 Query: 14 LNLGILGHVDSGKTTLTRR-IAELGSTSAFDAHATSTTTDGIRRNTLDLGFST------M 66 +NL ++GHVDSGK+T T I +LG T + + + D+G + + Sbjct: 1542666 INLVVIGHVDSGKSTTTGHLIYKLGGID-------KRTIEKFEKESADMGKGSFKYAWVL 1542508 Query: 67 TSLSGRR-------------------LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVA 107 L R +ID PGH I+ ++ ++ D+A++++ + Sbjct: 1542507 DKLKNERERGITIDITLWKFETGKYYYTVIDAPGHRDFIKNMITGTSQADVAMLVVPAES 1542328 Query: 108 G-------IQPQTAEHLLLASKFCPNRVIIVLNKCDL--XXXXXXXXXXXXVRKGLKSMG 158 G + QT EH LLA ++I +NK D V LK +G Sbjct: 1542327 GGFEAAFSKEGQTREHALLAFTLGVKQMICAINKMDKCDYKEDRYNEIQKEVCGYLKKIG 1542148 Query: 159 VD-ENSPIVEMSLADGYFKEEMLQNL--------KLAIES--RIFEPKRDEEGEFLIAID 207 + E P V +S G+ + M+ K+ +E+ + PKR + + I Sbjct: 1542147 YNVEKVPFVPIS---GFLGDNMIDKSDKMPWYKGKILVEALDLMEPPKRPVDKPLRLPIQ 1541977 Query: 208 HCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLE 249 + I G GTV G V G L+ I F K++E Sbjct: 1541976 AVYKIGGIGTVPVGRVETGQLKAGMVITFAPSQITTECKSVE 1541851 Score = 50.1 bits (118), Expect = 1e-06 Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 18/140 (12%) Frame = -1 Query: 15 NLGILGHVDSGKTTLTRRIAE----LGSTSAFDAHATSTTTDGIRR-------------- 56 N+ ++ HVD GK+TLT + + + +A DA T T D R Sbjct: 1101656 NMSVIAHVDHGKSTLTDSLVSKAGIIAAKNAGDARFTDTRADEQERCITIKSTGISMYFE 1101477 Query: 57 NTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEH 116 + LD G L + LID PGH V AA V D A+V++D + G+ QT E Sbjct: 1101476 HDLDDGKGVQPFL----INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQT-ET 1101312 Query: 117 LLLASKFCPNRVIIVLNKCD 136 +L + R ++ +NK D Sbjct: 1101311 VLRQALSERIRPVLHVNKVD 1101252 Score = 44.3 bits (103), Expect = 6e-05 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 4/70 (5%) Frame = +2 Query: 72 RRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG----IQPQTAEHLLLASKFCPNR 127 R ++ +DCPGH L+ +L + V D A+++I AG QPQT+EHL Sbjct: 686762 RHVSFVDCPGHDILMATMLNGAAVMDAALLLI---AGNESCPQPQTSEHLAAVEIMRLKN 686932 Query: 128 VIIVLNKCDL 137 ++I+ NK +L Sbjct: 686933 ILILQNKVEL 686962 Score = 43.9 bits (102), Expect = 8e-05 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 22/144 (15%) Frame = +3 Query: 15 NLGILGHVDSGKTTLTRR-IAELG--STSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSG 71 N+ L HVD GKTTL+ I+ +G S D +R + + S+++ L Sbjct: 2237844 NVCFLAHVDHGKTTLSDSLISSVGIISEKLSGKLRYLDNRDDEQRRMITIKSSSISLLYS 2238023 Query: 72 RR------------------LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQT 113 + + LID PGH V A+ + D A++++DVV GI PQT Sbjct: 2238024 KYEHFNDNSNSSSPKNDKVLINLIDSPGHVDFSIEVSTAARLCDGALLVVDVVEGICPQT 2238203 Query: 114 AEHLLLASKFCPN-RVIIVLNKCD 136 +L + N + +++LNK D Sbjct: 2238204 --RAVLRQAWLENVKTVLILNKID 2238269 Score = 31.2 bits (69), Expect = 0.51 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = -2 Query: 16 LGILGHVDSGKTTLTRRIAEL 36 LGI+ H+D+GKTT T RI L Sbjct: 570037 LGIMAHIDAGKTTTTERILYL 569975 >gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 chr2_complete, whole genome shotgun sequence Length = 1971884 Score = 46.2 bits (108), Expect = 2e-05 Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%) Frame = +1 Query: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHL-LLASKFCPNRVIIVL 132 L +ID PGH S++ D+AI+++D++ G++PQT E + LL ++ C II L Sbjct: 373864 LLIIDTPGHESFNNLRARGSSLCDIAILVVDIMHGLEPQTIESINLLKARKC--YFIIAL 374037 Query: 133 NKCD 136 NK D Sbjct: 374038 NKID 374049 Score = 28.5 bits (62), Expect = 3.3 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Frame = +3 Query: 358 IFLPENYSNPFMAARLEQQPGSGC--RFAFSGIFSQILPENGKNLPPRFTRKCRK 410 IFL E Y N F P +G R AF F + L KNL FTR R+ Sbjct: 1702632 IFLAEGYINEFKKHDRAYWPTTGLSNRRAFGFWFDKALQNGFKNLMAIFTRDLRR 1702796 >gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ctg_529, whole genome shotgun sequence Length = 1835834 Score = 33.5 bits (75), Expect = 0.10 Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 38/162 (23%) Frame = +3 Query: 13 PLNLGILGHVDSGKTTLTRRIAELGSTSAFDA------HATSTTTDGI----RRNTLD-- 60 PLN+ +LG VD+GK+TL L T+ D H + G R T+D Sbjct: 1208520 PLNVVVLGAVDAGKSTLLGHFLTL--TNCVDKKLKNVKHLSWILDQGDDERDRGITIDPT 1208693 Query: 61 -----LGFSTMTSLSGR----------------RLALIDCPGHSGLIRAVLAASTVFDMA 99 L + +L+ ++ +ID PGH LI+ ++ + + A Sbjct: 1208694 KCQFNLDLKNIKNLNNHNSEHQTKIETPIYDSIKVNVIDTPGHHDLIQNLVMGAVFANSA 1208873 Query: 100 IVIIDVVAGIQPQ-----TAEHLLLASKFCPNRVIIVLNKCD 136 ++I+D ++ +EH+LL +II +NK D Sbjct: 1208874 VIIVDSNDVLKSDFFGVYFSEHMLLLYLLGIRYIIICVNKID 1208999 Score = 31.6 bits (70), Expect = 0.39 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 7/70 (10%) Frame = -2 Query: 58 TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG-------IQ 110 T+++G + + + RR ++D PGH + ++ +T D ++II G Sbjct: 1023184 TIEVGRAKIET-KNRRFTILDAPGHRNYVPNMIDGATQADCGVLIISARKGEFETGFERG 1023008 Query: 111 PQTAEHLLLA 120 QT EH LLA Sbjct: 1023007 GQTREHALLA 1022978 Score = 30.4 bits (67), Expect = 0.87 Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 26/127 (20%) Frame = -2 Query: 15 NLGILGHVDSGKTTLTRRIAELG---STS--------------------AFDAHATSTTT 51 N+ I G GKTTL R+ E STS A + ST Sbjct: 304603 NICICGGFHDGKTTLIDRLIEFSRYQSTSLDTRKNPEFTRYTDSRLDEQARELSIKSTPI 304424 Query: 52 DGIRRNTLDLGFSTMTSLSGRRLALI---DCPGHSGLIRAVLAASTVFDMAIVIIDVVAG 108 I +NTL + ++ + L D PGH + + A + D +++IDV+ G Sbjct: 304423 SLIFQNTLYENINDVSEFPKSKSYLFNIFDTPGHVNFMDEFVHALAICDGCVLVIDVLMG 304244 Query: 109 IQPQTAE 115 + T + Sbjct: 304243 LTSVTEQ 304223 Database: genome.fa Posted date: Jan 19, 2010 5:27 PM Number of letters in database: 8,347,606 Number of sequences in database: 9 Lambda K H 0.322 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,627,625 Number of Sequences: 9 Number of extensions: 45081 Number of successful extensions: 206 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 88 Number of HSP's gapped (non-prelim): 158 length of query: 500 length of database: 2,782,535 effective HSP length: 95 effective length of query: 405 effective length of database: 2,781,680 effective search space: 1126580400 effective search space used: 1126580400 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.9 bits)