TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000085_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Caenorhabditis elegans # Complete (500 letters) Database: genome.fa 697 sequences; 71,881,135 total letters Searching.....................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_147 120 1e-32 scaffold_128 100 2e-26 scaffold_118 68 3e-11 scaffold_93 68 4e-11 scaffold_599 58 3e-08 scaffold_113 57 6e-08 scaffold_115 54 6e-07 scaffold_90 53 1e-06 scaffold_39 50 9e-06 scaffold_5 49 2e-05 scaffold_16 49 2e-05 scaffold_664 49 2e-05 scaffold_60 49 2e-05 scaffold_171 36 3e-05 scaffold_52 48 4e-05 scaffold_27 48 4e-05 scaffold_151 47 6e-05 scaffold_267 35 9e-05 scaffold_29 46 1e-04 scaffold_12 46 1e-04 scaffold_41 46 1e-04 scaffold_22 45 2e-04 scaffold_84 45 2e-04 scaffold_161 42 0.003 scaffold_130 37 0.059 scaffold_140 37 0.059 scaffold_9 33 1.5 scaffold_82 31 4.2 scaffold_49 30 7.2 >scaffold_147 Length = 242120 Score = 120 bits (302), Expect(2) = 1e-32 Identities = 132/466 (28%), Positives = 201/466 (43%), Gaps = 34/466 (7%) Frame = -3 Query: 64 STMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKF 123 ST+ L + L+DCPGH+ LI+ ++ + + DM ++IDV GI TAE L++ + Sbjct: 30879 STINHLRYFQFTLVDCPGHASLIKTIIGGA*IIDMMFLVIDVTKGI*T*TAECLVIG-EI 30703 Query: 124 CPNRVIIVLNKCDLXXXXXXXXXXXXVRKGLKSMGVDENSPIVEMSLADGYFKEEMLQNL 183 +++I+VLNK DL + L +V +S E++L L Sbjct: 30702 LADKLIVVLNKIDLATEEVINKQKKIISNVLSKTKFGN*VSLVPVSAV*AIGIEDLLGIL 30523 Query: 184 KLAIESRIFEPKRDE--EGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNE 241 I P R L IDHCF IKG GTV TGT+I G ++ N E+ FP LN Sbjct: 30522 L----HNITIPNR*A*LNKGLLFMIDHCF*IKG*GTVTTGTII*GSMKPNDEVFFPMLNL 30355 Query: 242 KRRVKTLETWKXXXXXXXXXXXXXFLVAPSFDEHRFSRCICGPLGTLKSTKFVLATVEPI 301 +++K+L +K L + D R I G + + ++ + I Sbjct: 30354 NKKIKSL*MFKKPVQIGEPGDRIAALFT-NLDAKEIERGIVC*PGIVSLLENIVIDFKKI 30178 Query: 302 QFFRKSINSKSKIHVAVAFETVMAECQFLKEKE------NGEFEMLPSLLAPCQVLFSFE 355 +++ + S +K H+ TVM + + + N E E L L S Sbjct: 30177 SYYKG*LKS*NKFHITSGHLTVMG*LKLIIRPKNL*LEINSEGEYLED-YEGMY*LLSLL 30001 Query: 356 KSIFLPENYS--------NPFMAARLEQQPGSG---------CRFAFSG--IFSQ----I 392 I L E Y+ P +A+ GS CR AF G +FS I Sbjct: 30000 DYIKLQEKYNLYGVLQLEKPLIASMNSLVIGSKLDTDLEANICRIAFYGNILFSYTA**I 29821 Query: 393 LPENGKNLPPRFTRKCRKGHVERVEKDGFSAICTGMFKAETNFDVFRGFQICTSSGP-RG 451 N + F +K + G VE+V D ++ + +FK ETN + G I G +G Sbjct: 29820 FQ*NFLRV---FRKKTKNGKVEKV-IDNYTLLIKDLFKKETNIANYIGKLIVIK*GNIQG 29653 Query: 452 KIEGAFGKSGKFRVTFAEKIDGILTEKEEISLFLKKY--HNENRLV 495 KI+ AFGKSGK +V F E ++ + KKY H N+++ Sbjct: 29652 KIDSAFGKSGKVKV-FVESGTN*DMGNSDVVMIYKKYLFHK*NQII 29518 Score = 39.7 bits (91), Expect(2) = 1e-32 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Frame = -1 Query: 14 LNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDG----IRRNTLDLGFS 64 +N+G+LGH+DSGKT+L + ++++ + S +T++ R TLDLGFS Sbjct: 31082 INVGVLGHIDSGKTSLVKTLSKVINISTI*ITSTASLDKNP*S*ERGITLDLGFS 30918 >scaffold_128 Length = 268562 Score = 100 bits (250), Expect(2) = 2e-26 Identities = 78/274 (28%), Positives = 126/274 (45%), Gaps = 2/274 (0%) Frame = -2 Query: 64 STMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKF 123 ST+ L + L+DCPGH+ LI+ ++ + + DM ++IDV GI TAE L++ + Sbjct: 76567 STINHLRYFQFTLVDCPGHASLIKTIIGGA*IIDMMFLVIDVTKGI*T*TAECLVIG-EI 76391 Query: 124 CPNRVIIVLNKCDLXXXXXXXXXXXXVRKGLKSMGVDENSPIVEMSLADGYFKEEMLQNL 183 +++I+VLNK DL + L P+V +S E++L L Sbjct: 76390 LADKLIVVLNKIDLATEEVINKQKKIIANVLSKTKFGN*VPLVPVSAI*ALGIEDLLGIL 76211 Query: 184 KLAIESRIFEPKRDE--EGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNE 241 I P R L IDHCF IKG GTV TGT+I+G ++ N E+ FP LN Sbjct: 76210 L----QNITVPNR*A*LNKGLLFMIDHCF*IKG*GTVTTGTIIQGSMKPNDEVYFPMLNL 76043 Query: 242 KRRVKTLETWKXXXXXXXXXXXXXFLVAPSFDEHRFSRCICGPLGTLKSTKFVLATVEPI 301 +++K+L +K L + D R I G + + ++ + I Sbjct: 76042 NKKIKSL*MFKKPV*IGEPGDRIAALFT-NLDAKEIERGIVC*PGIVSLLENIVIDFKKI 75866 Query: 302 QFFRKSINSKSKIHVAVAFETVMAECQFLKEKEN 335 +++ + S +K H+ TVM + + +N Sbjct: 75865 SYYKG*LKS*NKFHITSGHLTVMG*LKLIIRPKN 75764 Score = 44.7 bits (104), Expect = 4e-04 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Frame = -3 Query: 404 FTRKCRKGHVERVEKDGFSAICTGMFKAETNFDVFRGFQICTSSGP-RGKIEGAFGKSGK 462 F +K + G VE+V D ++ + +FK ETN + G I G +GKI+ AFGKSGK Sbjct: 75483 FRKKTKNGKVEKVI-DNYTLLIKDLFKKETNIANYIGKLIVIK*GNIQGKIDSAFGKSGK 75307 Query: 463 FRVTFAEKIDGILTEKEEISLFLKKY 488 +V F E ++ + KKY Sbjct: 75306 VKV-FVESGTN*DMANSDVVMIYKKY 75232 Score = 38.5 bits (88), Expect(2) = 2e-26 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Frame = -3 Query: 14 LNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDG----IRRNTLDLGFS 64 +N+G+LGH+DSGKT+L + ++++ + S +T++ R TLDLGFS Sbjct: 76770 INVGVLGHIDSGKTSLVKTLSKVINPSTN*ITSTASLDKNP*S*ERGITLDLGFS 76606 >scaffold_118 Length = 285946 Score = 68.2 bits (165), Expect = 3e-11 Identities = 65/253 (25%), Positives = 108/253 (42%), Gaps = 31/253 (12%) Frame = -3 Query: 14 LNLGILGHVDSGKTTLTRRIAELGST-------SAFDAHATSTTTDGIRRNTLDLGFSTM 66 LN+G +GH+D GKTTLT I ++ + D+ ++ IR L S Sbjct: 72884 LNVGTIGHIDHGKTTLTSAITKVLAK***L*IIKEIDSLSSKNMVKLIRLLKRRLVVSPS 72705 Query: 67 TSLSGR---RLAL-------------IDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQ 110 L +L + +DCPGH ++ ++ + D AI+++ G Sbjct: 72704 IVLQWNIKPKLDIMGNN*CYN*SHSHVDCPGHIDYVKNMITGAAKMDAAILVVAATDGCM 72525 Query: 111 PQTAEHLLLASKFCPNRVIIVLNKCDL-XXXXXXXXXXXXVRKGLKSMGVD-ENSPIVEM 168 T EH+LL + +I+ +NK DL +R+ L D +N+ IV+ Sbjct: 72524 A*TREHVLLCRQVGVETIIVFVNKIDLAKDPEIHELVEMEIRELLSKYEYDGDNAKIVKG 72345 Query: 169 SL------ADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGT 222 S + E+ + L ++ I P R + FL++I+ + I G+GTV+TGT Sbjct: 72344 SALLASNDQEPELGEKSILQLLETMDKEIKIP*RTIDKPFLMSIEGTYHIAGRGTVVTGT 72165 Query: 223 VIRGVLRLNTEIE 235 + G IE Sbjct: 72164 ID*GKASTKDNIE 72126 >scaffold_93 Length = 332513 Score = 67.8 bits (164), Expect = 4e-11 Identities = 63/253 (24%), Positives = 106/253 (41%), Gaps = 31/253 (12%) Frame = +2 Query: 14 LNLGILGHVDSGKTTLTRRIAELGST-------SAFDAHATSTTTDGIR----------R 56 LN+G +GH+D GKTTLT I ++ + D ++ IR Sbjct: 239564 LNVGTIGHIDHGKTTLTSAITKVLAK***L*IIKEID*LSSKNMVKLIRLLKRRLVVSPS 239743 Query: 57 NTLDLGFSTMTSLSGRRLAL------IDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQ 110 L + G + +DCPGH ++ ++ + D AI+++ G Sbjct: 239744 IVLQWNIKPKLDIMGNN*SYN*SHSHVDCPGHIDYVKNMITGAAKMDAAILVVAATDGCM 239923 Query: 111 PQTAEHLLLASKFCPNRVIIVLNKCDL-XXXXXXXXXXXXVRKGLKSMGVD-ENSPIVEM 168 T EH+LL + +I+ +NK DL +R+ L D +N+ IV+ Sbjct: 239924 A*TREHVLLCRQVGVETIIVFVNKIDLAKDPEIHELVEMEIRELLSKYEYDGDNAKIVKG 240103 Query: 169 SL------ADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGT 222 S + E+ + L ++ I P R + FL++I+ + I G+GTV+TGT Sbjct: 240104 SALLASNDQEPELGEKSILQLLETMDKEIKIP*RPIDKPFLMSIEGTYHIAGRGTVVTGT 240283 Query: 223 VIRGVLRLNTEIE 235 + G + IE Sbjct: 240284 ID*GKASIKDNIE 240322 >scaffold_599 Length = 2277 Score = 58.2 bits (139), Expect = 3e-08 Identities = 73/274 (26%), Positives = 113/274 (41%), Gaps = 38/274 (13%) Frame = -1 Query: 14 LNLGILGHVDSGKTTLTRR-IAELG-----STSAFDAHATSTTTDGIR--------RNTL 59 +NL ++GHVDSGK+T T I +LG + ++ AT + ++ Sbjct: 1371 VNLVVIGHVDSGKSTTTGHLIYKLGGIDERTIKKYEEDATRIGKGSFKYAWVLDNLKDER 1192 Query: 60 DLGFSTMTSL-----SGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVA-----GI 109 + G + SL + +ID PGH I+ ++ +T D+A+++I A GI Sbjct: 1191 ERGITIDISLWKFETNKYYYTVIDAPGHRDFIKNMITGTT*ADIAMIMIAATAGEFEVGI 1012 Query: 110 QPQ--TAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXXVRKG----LKSMGVD-EN 162 T EH+LLA +I +NK D + K LK +G + +N Sbjct: 1011 SQNG*TKEHILLAYTLGVR*LICAINKMDEKSVLYSKGRYDEIVKEMSIYLKKVGYNPDN 832 Query: 163 SPIVEMSLADGYFKEEMLQNLK-------LAIESRIFEPKRDEEGEFLIAIDHCFAIKGQ 215 P + +S +G E NL+ L + PKR E + + + I G Sbjct: 831 VPYIPISGWNGDNMLEKSINLQWYNGPTLLEALDAVTPPKRPTEKPLRLPLQDVYKIGGI 652 Query: 216 GTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLE 249 GTV G V GVL I F VK++E Sbjct: 651 GTVPVGRVETGVLTRGMVI*FAPSGIASEVKSIE 550 >scaffold_113 Length = 295349 Score = 57.4 bits (137), Expect = 6e-08 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 26/145 (17%) Frame = -3 Query: 18 ILGHVDSGKTTLTRRIAE-------------------LGSTSAFDAHATSTTTDGIRRN- 57 ILGHVD+GK+TLT R+ + LG S+ A+AT T + + Sbjct: 226713 ILGHVDTGKSTLTGRLLQVFKALDDKELRKNQKDAKNLGKESSALAYATDMTKEEKEKGV 226534 Query: 58 TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGI------QP 111 T+D+ + T+ + GR+ L+D PGH ++A + D AI+++D Sbjct: 226533 TMDMAYKTVV-IGGRQYNLLDSPGHQDFAPYLIAGAA*ADYAILVVDTTKNAFENSIKSG 226357 Query: 112 QTAEHLLLASKFCPNRVIIVLNKCD 136 E L L S +++ LNK D Sbjct: 226356 MLREKL*LISAMLIKEIVVALNKMD 226282 Score = 40.0 bits (92), Expect = 0.009 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 27/150 (18%) Frame = -2 Query: 14 LNLGILGHVDSGKTTLTRR-IAELG-----STSAFDAHATST---------TTDGIRRN- 57 +NL ++GHVDSGK+T T I +LG + F+ A D ++ Sbjct: 202687 VNLVVIGHVDSGKSTTTGHLIYKLGGIDERTIKKFEDEANKLGKGSFKYAWVLDNLKAER 202508 Query: 58 ----TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108 T+D+ + + +ID PGH I+ ++ ++ D+A+++I + AG Sbjct: 202507 ERGITIDISLWKFET-NKYYYTVIDAPGHRDFIKNMITGTS*ADVALLMIASPAGEFEAG 202331 Query: 109 IQPQ--TAEHLLLASKFCPNRVIIVLNKCD 136 I + T EH+LLA +I NK D Sbjct: 202330 ISKEG*TREHVLLAYTLGVK*MICATNKMD 202241 Score = 30.0 bits (66), Expect = 9.4 Identities = 23/80 (28%), Positives = 35/80 (43%) Frame = -3 Query: 170 LADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLR 229 L+DG + +L+ L + PKR E + + + I G GTV G V GVL+ Sbjct: 202086 LSDGTRDQHLLEAL-----DAVTPPKRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 201922 Query: 230 LNTEIEFPALNEKRRVKTLE 249 + F VK++E Sbjct: 201921 PGMVV*FAPSAITTEVKSVE 201862 >scaffold_115 Length = 292917 Score = 53.9 bits (128), Expect = 6e-07 Identities = 70/278 (25%), Positives = 114/278 (41%), Gaps = 42/278 (15%) Frame = +3 Query: 14 LNLGILGHVDSGKTTLTRR-IAELG-----STSAFDAHATST---------TTDGIRRN- 57 +NL ++GHVDSGK+T T I +LG + F+ A D ++ Sbjct: 94248 VNLVVIGHVDSGKSTTTGHLIYKLGGIDERTIKKFEDEANKLGKGSFKYAWVLDNLKAER 94427 Query: 58 ----TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108 T+D+ + + +ID PGH I+ ++ ++ D+A+++I + AG Sbjct: 94428 ERGITIDISLWKFET-NKYYYTVIDAPGHRDFIKNMITGTS*ADVALLMIASPAGEFEAG 94604 Query: 109 IQPQ--TAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXXV----RKGLKSMGVD-E 161 I + T EH+LLA +I NK D + R LK +G + + Sbjct: 94605 ISKEG*TREHVLLAYTLGVK*MICATNKMDEKTVNYAQGRYDEIVKEMRDYLKKVGYNPD 94784 Query: 162 NSPIVEMSLADGYFKEEMLQNLK----------LAIESRIFEPKRDEEGEFLIAIDHCFA 211 N P + +S G+ + ML+ L + PKR E + + + Sbjct: 94785 NVPFIPIS---GWVGDNMLEKSANFGWYKGPTLLEALDAVTPPKRPTEKPLRLPLQDVYK 94955 Query: 212 IKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLE 249 I G GTV G V GVL+ + F VK++E Sbjct: 94956 IGGIGTVPVGRVETGVLKPGMVV*FAPSAITTEVKSVE 95069 >scaffold_90 Length = 339195 Score = 52.8 bits (125), Expect = 1e-06 Identities = 62/276 (22%), Positives = 111/276 (40%), Gaps = 38/276 (13%) Frame = +2 Query: 14 LNLGILGHVDSGK-TTLTRRIAELGSTSAFDAHATSTTTDGI-----------------R 55 +NL ++GHVDSGK TT+ I +LG + + I R Sbjct: 149180 INLVVIGHVDSGKSTTIGNLIYKLGGIDEKTINKYEEEANKIGKGSFKYAWVLDNLKDER 149359 Query: 56 RNTLDLGFSTMT-SLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQ-- 112 + + ST + +ID PGH ++ ++ ++ D+A+++I AG Sbjct: 149360 ERGITIDISTQKFETNNYNYRVIDAPGHRDFLKNMITGTS*ADVALLMISSAAGEFEAGM 149539 Query: 113 -----TAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXXV----RKGLKSMGVD-EN 162 T EH+LLA ++ +NK D + + L+ +G + +N Sbjct: 149540 SQNG*TKEHILLAYTLGIR*IVCAINKMDEKSVNYSKERYDGIVE*IKTYLEKVGYNPKN 149719 Query: 163 SPIVEMSLADGYFKEEMLQNLKLAIESRIFE-------PKRDEEGEFLIAIDHCFAIKGQ 215 + + +S +G + NL +FE PK+ + +++ + I G Sbjct: 149720 TMFIPISGWEGDNMLKRSPNLLWYHGPTVFEALDTITPPKKHADKPLRFPLENVYKIGGI 149899 Query: 216 GTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETW 251 GTV GT+ GVL+ I+F K++E + Sbjct: 149900 GTVPIGTL*TGVLKTGMMIQFAPSGIIAEAKSIEAF 150007 >scaffold_39 Length = 495371 Score = 50.1 bits (118), Expect = 9e-06 Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 19/141 (13%) Frame = -3 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTSAF--DAHATSTTTD--------GIRRNTLDLGFS 64 N GI+ H+D+GKTT T R+ F + H +TT D GI + + F Sbjct: 20334 NFGIIAHIDAGKTTTTERMLFYSGAITFPGEVHDGTTTMDFMP*ERQRGITIRSAAISF- 20158 Query: 65 TMTSLSGRRLALIDCPGHSGLIRAVLAASTVF---------DMAIVIIDVVAGIQPQTAE 115 + + + LID PGH V + V D AI I D V+G+Q Q+ Sbjct: 20157 ---NWANHQYNLIDTPGHIDFTAEVERSLRVLGTNIISIFADGAIAIFDGVSGVQTQSET 19987 Query: 116 HLLLASKFCPNRVIIVLNKCD 136 L A+KF ++ V NK D Sbjct: 19986 VWLQANKFNIPKIAFV-NKMD 19927 >scaffold_5 Length = 770190 Score = 48.9 bits (115), Expect = 2e-05 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 9/131 (6%) Frame = -2 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDL---------GFST 65 N+G+ H+DSGKTT + R+ G + G + ++L +T Sbjct: 615830 NIGVSAHIDSGKTTFSERVLYYGGRIHEIHEVKGADSAGATMDFMELEKEKGITI*SAAT 615651 Query: 66 MTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCP 125 G + LID PGH V A V D +++I VAG+QP T S++ Sbjct: 615650 HLKWRGH*VNLIDTPGHVDFTIEVERALRVLDGGVLLICGVAGVQP*TLTVHK*MSRYKV 615471 Query: 126 NRVIIVLNKCD 136 R+I + NK D Sbjct: 615470 PRIIFI-NKLD 615441 >scaffold_16 Length = 645506 Score = 48.9 bits (115), Expect = 2e-05 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 9/131 (6%) Frame = -1 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDL---------GFST 65 N+G+ H+DSGKTT + R+ G + G + ++L +T Sbjct: 505994 NIGVSAHIDSGKTTFSERVLYYGGRIHEIHEVKGADSAGATMDFMELEKEKGITI*SAAT 505815 Query: 66 MTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCP 125 G + LID PGH V A V D +++I VAG+QP T S++ Sbjct: 505814 HLKWRGH*VNLIDTPGHVDFTIEVERALRVLDGGVLLICGVAGVQP*TLTVHK*MSRYKV 505635 Query: 126 NRVIIVLNKCD 136 R+I + NK D Sbjct: 505634 PRIIFI-NKLD 505605 >scaffold_664 Length = 2080 Score = 48.9 bits (115), Expect = 2e-05 Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 16/138 (11%) Frame = -1 Query: 15 NLGILGHVDSGKTTLTRRI----AELGSTSAFDAHATSTTTDGIRRNTL----------D 60 N+ ++ HVD GK+TLT + + S A DA AT T D R + Sbjct: 496 NMSVIAHVDHGKSTLTDSLLCKAGIIASKVAGDARATDTREDEKERGITIKSTGVSLYYE 317 Query: 61 LGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQ--PQTAEHLL 118 +L + LID PGH V AA V D A+V++D V G+ +T Sbjct: 316 YDIYDNKTLEKFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV*TETVLRQA 137 Query: 119 LASKFCPNRVIIVLNKCD 136 + K P ++++NK D Sbjct: 136 MQEKIKP---VVMVNKID 92 >scaffold_60 Length = 437965 Score = 48.9 bits (115), Expect = 2e-05 Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 16/138 (11%) Frame = -2 Query: 15 NLGILGHVDSGKTTLTRRI----AELGSTSAFDAHATSTTTDGIRRNTL----------D 60 N+ ++ HVD GK+TLT + + S A DA AT T D R + Sbjct: 100383 NMSVIAHVDHGKSTLTDSLLCKAGIIASKVAGDARATDTREDEKERGITIKSTGVSLYYE 100204 Query: 61 LGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQ--PQTAEHLL 118 +L + LID PGH V AA V D A+V++D V G+ +T Sbjct: 100203 YDIYDNKTLEKFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV*TETVLRQA 100024 Query: 119 LASKFCPNRVIIVLNKCD 136 + K P ++++NK D Sbjct: 100023 MQEKIKP---VVMVNKID 99979 >scaffold_171 Length = 174740 Score = 36.2 bits (82), Expect(2) = 3e-05 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 7/78 (8%) Frame = -2 Query: 66 MTSLSGRRLA-----LIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQ--PQTAEHLL 118 MTS++ + L LID PGH V AA V D A+V++D V G+ +T Sbjct: 94342 MTSMNNKTLEKFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV*TETVLRQA 94163 Query: 119 LASKFCPNRVIIVLNKCD 136 + K P ++++NK D Sbjct: 94162 MQEKIKP---VVMVNKID 94118 Score = 31.2 bits (69), Expect(2) = 3e-05 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%) Frame = -1 Query: 15 NLGILGHVDSGKTTLTR----RIAELGSTSAFDAHATSTTTD 52 N+ ++ HVD GK+TLT + + S A DA AT T D Sbjct: 94523 NMSVIAHVDHGKSTLTDSLLCKAGIIASKVAGDARATDTRED 94398 >scaffold_52 Length = 461155 Score = 47.8 bits (112), Expect = 4e-05 Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 14/136 (10%) Frame = +1 Query: 15 NLGILGHVDSGKTTLTRRI----AELGSTSAFDAHATSTTTDGIRRNTL----------D 60 N+ ++ HVD GK+TLT + + S A DA AT T D R + Sbjct: 372559 NMSVIAHVDHGKSTLTDSLLCKAGIIASKVAGDARATDTREDEKERGITIKSTGVSLYYE 372738 Query: 61 LGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLA 120 +L + LID PGH V AA V D A+V++D V G+ T E +L Sbjct: 372739 YDIYDNKTLEKFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV*T-ETVLRQ 372915 Query: 121 SKFCPNRVIIVLNKCD 136 + + ++++NK D Sbjct: 372916 AM*EKIKPVVMVNKID 372963 Score = 33.1 bits (74), Expect(2) = 2e-04 Identities = 22/61 (36%), Positives = 33/61 (54%) Frame = +3 Query: 76 LIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLNKC 135 LID PGH V AA V D A+V++D V G+ T E +L + + ++++NK Sbjct: 363408 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV*T-ETVLRQAM*EKIKPVVMVNKI 363584 Query: 136 D 136 D Sbjct: 363585 D 363587 Score = 31.2 bits (69), Expect(2) = 2e-04 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%) Frame = +2 Query: 15 NLGILGHVDSGKTTLTR----RIAELGSTSAFDAHATSTTTD 52 N+ ++ HVD GK+TLT + + S A DA AT T D Sbjct: 363182 NMSVIAHVDHGKSTLTDSLLCKAGIIASKVAGDARATDTRED 363307 >scaffold_27 Length = 545223 Score = 47.8 bits (112), Expect = 4e-05 Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 14/136 (10%) Frame = +2 Query: 15 NLGILGHVDSGKTTLTRRI----AELGSTSAFDAHATSTTTDGIRRNTL----------D 60 N+ ++ HVD GK+TLT + + S A DA AT T D R + Sbjct: 387665 NMSVIAHVDHGKSTLTDSLLCKAGIIASKVAGDARATDTREDEKERGITIKSTGVSLYYE 387844 Query: 61 LGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLA 120 +L + LID PGH V AA V D A+V++D V G+ T E +L Sbjct: 387845 YDIYDNKTLEKFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV*T-ETVLRQ 388021 Query: 121 SKFCPNRVIIVLNKCD 136 + + ++++NK D Sbjct: 388022 AM*EKIKPVVMVNKID 388069 >scaffold_151 Length = 234462 Score = 47.4 bits (111), Expect = 6e-05 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 16/138 (11%) Frame = -3 Query: 15 NLGILGHVDSGKTTLTRRI----AELGSTSAFDAHATSTTTDG------IRRNTLDLGFS 64 N+ ++ HVD GK+TLT + L + + D T T D I+ + L + Sbjct: 110095 NMSVIAHVDHGKSTLTDSLLCKAGILSAKESGDKRMTDTREDEQLRGITIKSTGVSLYYE 109916 Query: 65 TMTSLSGRR----LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG--IQPQTAEHLL 118 + + + + LID PGH V AA V D A+V++D V G +Q +T Sbjct: 109915 FDINYNNVKE*FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQA 109736 Query: 119 LASKFCPNRVIIVLNKCD 136 + K P ++++NK D Sbjct: 109735 MQEKIKP---VVMINKID 109691 >scaffold_267 Length = 10921 Score = 34.7 bits (78), Expect(2) = 9e-05 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Frame = -3 Query: 59 LDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQ--PQTAEH 116 +++ F T+ + LID PGH V AA V D A+V++D V G+ +T Sbjct: 10397 MNMTFMTIRP*KKFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV*TETVLR 10218 Query: 117 LLLASKFCPNRVIIVLNKCD 136 + K P ++++NK D Sbjct: 10217 QAMQEKIKP---VVMVNKID 10167 Score = 31.2 bits (69), Expect(2) = 9e-05 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%) Frame = -2 Query: 15 NLGILGHVDSGKTTLTR----RIAELGSTSAFDAHATSTTTD 52 N+ ++ HVD GK+TLT + + S A DA AT T D Sbjct: 10572 NMSVIAHVDHGKSTLTDSLLCKAGIIASKVAGDARATDTRED 10447 >scaffold_29 Length = 537272 Score = 46.2 bits (108), Expect = 1e-04 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Frame = -1 Query: 72 RRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDV-VAGIQPQTAEHLLLASKFCPNRVII 130 R ++ +DCPGH L+ +L + V D A++I+ + QPQT EHL+ VI+ Sbjct: 470279 RHISFVDCPGHDILMSTMLTGAAVMDCALLIVAANMPCPQPQTQEHLVALVITKLKYVIV 470100 Query: 131 VLNKCDL 137 + NK D+ Sbjct: 470099 IQNKVDI 470079 >scaffold_12 Length = 675213 Score = 46.2 bits (108), Expect = 1e-04 Identities = 42/161 (26%), Positives = 67/161 (41%) Frame = +1 Query: 13 PLNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSGR 72 P + I+GHVD GKTTL R+ +++ GI T +G + + Sbjct: 424474 PPIITIMGHVDHGKTTLLDRLR--------NSNIAEGEVGGI---T*KIG-AFHVKVGDN 424617 Query: 73 RLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVL 132 + ID PGH + DM I+++ G+ PQT E + +AS +I+ + Sbjct: 424618 *ITFIDTPGHEAFSNMR*RGAEFTDMIILVVSAADGV*PQTKEVI*IAS*L-NIPIIVAI 424794 Query: 133 NKCDLXXXXXXXXXXXXVRKGLKSMGVDENSPIVEMSLADG 173 NK D+ + GL N P+V +S +G Sbjct: 424795 NKIDVPNVNPEDVELELLECGLDLES*GGNIPVVHISAKNG 424917 >scaffold_41 Length = 483735 Score = 46.2 bits (108), Expect = 1e-04 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Frame = -1 Query: 72 RRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDV-VAGIQPQTAEHLLLASKFCPNRVII 130 R ++ +DCPGH L+ +L + V D A++I+ + QPQT EHL+ VI+ Sbjct: 396627 RHISFVDCPGHDILMSTMLTGAAVMDCALLIVAANMPCPQPQTQEHLVALVITKLKYVIV 396448 Query: 131 VLNKCDL 137 + NK D+ Sbjct: 396447 IQNKVDI 396427 >scaffold_22 Length = 570993 Score = 45.4 bits (106), Expect = 2e-04 Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 6/125 (4%) Frame = -2 Query: 18 ILGHVDSGKTTLTRRIAEL----GSTSAFD--AHATSTTTDGIRRNTLDLGFSTMTSLSG 71 ILGHVD+GKTTL +I G AT ++ + + Sbjct: 567587 ILGHVDTGKTTLLDKIRNTNV*EGEAGGIT**IGATFFPAKKLKEELIKT**FYPVDCNI 567408 Query: 72 RRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIV 131 L +ID PGH S++ D+AI++ID++ G++ T E L L K II Sbjct: 567407 PGLLIIDTPGHESFSNLRTRGSSLCDLAILVIDLMHGLEN*TLESLELL-KLRKTPFIIA 567231 Query: 132 LNKCD 136 LNK D Sbjct: 567230 LNKID 567216 >scaffold_84 Length = 354111 Score = 45.4 bits (106), Expect = 2e-04 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 27/151 (17%) Frame = +1 Query: 13 PLNLGILGHVDSGKTTLT-RRIAELGSTSAFDAH-------------------ATSTTTD 52 P+NL +GHVD+GK+TL R + ELG S D + Sbjct: 17650 PVNLVFIGHVDAGKSTLCGRLLLELGEVSEADIKKYE*EAV*NNRDSWWLAYVMDQNEEE 17829 Query: 53 GIRRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG---- 108 + T++ G + + +R L D PGH + ++ + D+A +I+ G Sbjct: 17830 K*KGKTVECGKA*FVT-KQKRFILADAPGHKNYVPNMIMGAC*ADLAGLIVSAKTGEFES 18006 Query: 109 ---IQPQTAEHLLLASKFCPNRVIIVLNKCD 136 QT EH LLA + +II++ K D Sbjct: 18007 GFEKGGQT*EHALLAKSLGVDHIIIIVTKMD 18099 >scaffold_161 Length = 215326 Score = 41.6 bits (96), Expect = 0.003 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 14/136 (10%) Frame = -1 Query: 15 NLGILGHVDSGKTTLTRRI----AELGSTSAFDAHATSTTTDG------IRRNTLDLGFS 64 N+ ++ HVD GK+TLT + L + + + T T D I+ + L + Sbjct: 99544 NMSVIAHVDHGKSTLTDSLLCKAGILSAKESGEKRMTDTR*DE*LRGITIKSTGISLYYE 99365 Query: 65 TMTSLSGRR----LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLA 120 + + + + LID PGH V AA V D A+V++D V G+ T E +L Sbjct: 99364 YDINYNNTKE*FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV*T-ETVLRQ 99188 Query: 121 SKFCPNRVIIVLNKCD 136 + + ++++NK D Sbjct: 99187 AM*EKIKPVVMINKID 99140 >scaffold_130 Length = 264698 Score = 37.4 bits (85), Expect = 0.059 Identities = 21/61 (34%), Positives = 32/61 (52%) Frame = +2 Query: 76 LIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLNKC 135 L D PGH + V A D ++IIDV+ G+ T E L+ A+ +++V+NK Sbjct: 50615 LYDTPGHVNFMDEVCCALRASDAMLLIIDVIEGVM-MTTEMLIKAAVKEKMPIVVVINKI 50791 Query: 136 D 136 D Sbjct: 50792 D 50794 >scaffold_140 Length = 252200 Score = 37.4 bits (85), Expect = 0.059 Identities = 21/61 (34%), Positives = 32/61 (52%) Frame = -3 Query: 76 LIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLNKC 135 L D PGH + V A D ++IIDV+ G+ T E L+ A+ +++V+NK Sbjct: 215364 LYDTPGHVNFMDEVCCALRASDAMLLIIDVIEGVM-MTTEMLIKAAVKEKMPIVVVINKI 215188 Query: 136 D 136 D Sbjct: 215187 D 215185 >scaffold_9 Length = 703586 Score = 32.7 bits (73), Expect = 1.5 Identities = 22/62 (35%), Positives = 32/62 (51%) Frame = +3 Query: 76 LIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLNKC 135 LID PGH V + + AI++ID GI T + +LA K ++I V+NK Sbjct: 512958 LIDTPGHVDFTYEVSRSMRACEGAILLIDATQGI*A*TLSNYILAKK-*NLKIIPVINKI 513134 Query: 136 DL 137 D+ Sbjct: 513135 DM 513140 >scaffold_82 Length = 357438 Score = 31.2 bits (69), Expect = 4.2 Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 5/117 (4%) Frame = +2 Query: 25 GKTTLTRRIAE----LGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSGRRLALIDCP 80 GKTTLT ++ + A + + D R S + LID P Sbjct: 45068 GKTTLTDQLISANNIISKRLAGNLRYMDSREDE*LRGITMKSSSISIIYENHLINLIDSP 45247 Query: 81 GHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPN-RVIIVLNKCD 136 GH V AA + D A+V++DV+ G T +L F + I+VLNK D Sbjct: 45248 GHVEFSSEVQAALRLTDGALVLVDVLEGFSS*TFN--VLK*MFEEGIKGILVLNKVD 45412 >scaffold_49 Length = 465594 Score = 30.4 bits (67), Expect = 7.2 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 9/131 (6%) Frame = -2 Query: 15 NLGILGHVDSGKT-TLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD-------LGFSTM 66 N+ I+ HVD GKT + + + + A + D + N L+ L T Sbjct: 65792 NVAIIAHVDHGKTVNI*SYLIKTLVDALLRASGCANEYDSMDSNALEKEKGITILSKVTG 65613 Query: 67 TSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPN 126 + G ++ ++D PGH V ++ D +++ G P +L N Sbjct: 65612 VTFGGSKINIVDTPGHQDFGGEVERIMSMVDGVCLLVCATEG--PMA*TRFVL*KALQSN 65439 Query: 127 -RVIIVLNKCD 136 + I+++NK D Sbjct: 65438 LKPIVIINKVD 65406 Database: genome.fa Posted date: Feb 10, 2010 10:01 AM Number of letters in database: 71,881,135 Number of sequences in database: 697 Lambda K H 0.322 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,285,869 Number of Sequences: 697 Number of extensions: 346193 Number of successful extensions: 1132 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 1006 Number of HSP's gapped (non-prelim): 220 length of query: 500 length of database: 23,960,378 effective HSP length: 110 effective length of query: 390 effective length of database: 23,883,708 effective search space: 9314646120 effective search space used: 9314646120 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 66 (30.0 bits)