TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000085_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Caenorhabditis elegans # Complete (500 letters) Database: genome.fa 218 sequences; 41,633,360 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_3 60 5e-09 scaffold_9 54 5e-07 scaffold_16 48 2e-05 scaffold_28 47 3e-05 scaffold_4 46 1e-04 scaffold_15 31 0.006 scaffold_2 33 0.50 >scaffold_3 Length = 2609234 Score = 60.1 bits (144), Expect = 5e-09 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 47/225 (20%) Frame = -1 Query: 73 RLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVL 132 RL++ H+ L R V+ S D AI+++ G PQT EHLLLA + +++ + Sbjct: 70334 RLSVCTLATHASLSRPVID-SY*MDGAILVVSATDGQMPQTREHLLLAKQVGVGHLVVFI 70158 Query: 133 NKCDLXXXXXXXXXXXX----------------------------------------VRK 152 NK D+ +R+ Sbjct: 70157 NKADMIDDPELLELVRLGHHGFFCFFSRFVTR*ACTFHFALTTFHWCARGNRQVEVEIRE 69978 Query: 153 GLKSMGVDEN-SPIVEMSLADGY------FKEEMLQNLKLAIESRIFEPKRDEEGEFLIA 205 L + G DE+ +P++ S E + L A+++ I P RD + FL+ Sbjct: 69977 LLGTYGFDEDETPVITGSALCALEDKSPEMGREAILKLMEAVDNWIPTPVRDLDKPFLMP 69798 Query: 206 IDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 250 +++ F+I G+GTV+TG + RG+++ E+E + + +KT T Sbjct: 69797 VENAFSISGRGTVVTGKIERGIVKKGDEVEI--IGYGKNIKTTIT 69669 Score = 33.9 bits (76), Expect = 0.38 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 21/122 (17%) Frame = +1 Query: 22 VDSGKTTL-------TRRIAELGSTS----AFDAHATSTTT---DGIRRNTLDLGFSTMT 67 +D GKTTL + E G + AF ++ T T D + + F+++ Sbjct: 2543338 IDHGKTTLLDAYRSSSIAAGEAGGITQHIGAFMGTSSPTNTWCLDTLAKQLSHCDFASIA 2543517 Query: 68 SL-------SGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLA 120 L +R+ +D PGH+ ++ D+ I+++ G+ PQT E + A Sbjct: 2543518 QLLTPVELGDAQRITFLDTPGHAAFSAMRQRGASATDVVILVVAADDGVMPQTIESIKYA 2543697 Query: 121 SK 122 ++ Sbjct: 2543698 TE 2543703 Score = 30.4 bits (67), Expect = 4.2 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = -2 Query: 15 NLGILGHVDSGKTTLTRRIAE 35 N+G +GHVD GKT+LT I + Sbjct: 70780 NIGTIGHVDHGKTSLTAAITK 70718 >scaffold_9 Length = 1303534 Score = 53.5 bits (127), Expect = 5e-07 Identities = 60/288 (20%), Positives = 109/288 (37%), Gaps = 65/288 (22%) Frame = -1 Query: 14 LNLGILGHVDSGKTTLT-RRIAELGSTSAFDAHATSTTTDGIRRNTLDLGF--------- 63 +++ I GHVD+GK+T T R I ELG + + + + + F Sbjct: 435265 VSIVICGHVDAGKSTTTGRLIFELGGIPEREMQKLKDEAERLGKGSFAFAFYMDRQKEER 435086 Query: 64 ---------STMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDV--------- 105 + + + +ID PGH I+ ++ ++ D+A++++ Sbjct: 435085 ERGVTIACTTKEFFTATKHYTVIDAPGHRDFIKNMITGASQADVALLMVPCDGNFTAAIA 434906 Query: 106 -----VAGIQPQTAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXXVRK-------- 152 +Q QT +H +L + ++I+ NK D VR Sbjct: 434905 KGNHKAGEVQGQTRQHAVLINLLGVKQLIVGCNKMDCDVAGYGEARFKEVRDEMVHMLIK 434726 Query: 153 -GLKSMGVDENSPIVEMSLADGYFKEEMLQN-----------------------LKLAIE 188 G K V+E+ P++ +S G+ + ++ L+ A+E Sbjct: 434725 VGWKKSFVEESVPVLPIS---GWKGDNLITKTTNMSWWNGVDVKVDSETIHIDCLQDALE 434555 Query: 189 SRIFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEF 236 + P+R + I F IKG G VLTG V +G ++ E+ F Sbjct: 434554 KMVRVPQRATDKPMRTPISGVFKIKGVGDVLTGRVEQGTVKPGDEVVF 434411 Score = 39.3 bits (90), Expect = 0.009 Identities = 23/59 (38%), Positives = 34/59 (57%) Frame = +3 Query: 76 LIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLNK 134 LIDCPGH V A+ + D A+V++D + G+ QT E +L + R ++VLNK Sbjct: 372510 LIDCPGHVDFSGEVTASLRLADGALVVVDAIEGVGVQT-ETVLRQALAEGVRPVLVLNK 372683 >scaffold_16 Length = 929013 Score = 48.1 bits (113), Expect = 2e-05 Identities = 23/53 (43%), Positives = 32/53 (60%) Frame = -1 Query: 419 DGFSAICTGMFKAETNFDVFRGFQICTSSGPRGKIEGAFGKSGKFRVTFAEKI 471 D ++ +C MF ET+ + F I S+G G IEGAFG+SGKF+V E + Sbjct: 533904 DDYTLVCRDMFTKETDMNKFAYKPITLSTGDTGMIEGAFGQSGKFKVRLDEPL 533746 Score = 40.4 bits (93), Expect = 0.004 Identities = 13/36 (36%), Positives = 26/36 (72%) Frame = -3 Query: 73 RLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG 108 ++ L+DCPGH+ LI+ ++ + + D+ +++IDV G Sbjct: 536164 QVTLVDCPGHASLIKTIIGGAQIIDLMMLVIDVQKG 536057 Score = 37.7 bits (86), Expect = 0.027 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = -1 Query: 163 SPIVEMSLADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCFAIKGQ 215 SP + A G + ++NL + + P R +G F A+DHCF IKGQ Sbjct: 535521 SPHPNPNCAPGSGSPQGIENLMDQLVQALPRPARQVDGPFQFAVDHCFPIKGQ 535363 Score = 36.2 bits (82), Expect = 0.077 Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 31/86 (36%) Frame = -3 Query: 14 LNLGILGHVDSGKTTL-TRRI------------------------------AELGSTSAF 42 LN+G+LGHVDSGKT+L TRRI + + ST+AF Sbjct: 536710 LNVGVLGHVDSGKTSLGTRRIWLCHLIC*ATSDASCPHSVLSSPL*KAKALSTVASTAAF 536531 Query: 43 DAHATSTTTDGIRRNTLDLGFSTMTS 68 D + S R TLDLG S +++ Sbjct: 536530 DKNPQSKA----RGITLDLGMSHVST 536465 Score = 31.2 bits (69), Expect = 2.5 Identities = 14/25 (56%), Positives = 19/25 (76%) Frame = -2 Query: 215 QGTVLTGTVIRGVLRLNTEIEFPAL 239 QGTVLTGT+ RG ++++ IE P L Sbjct: 535220 QGTVLTGTITRGRVKVDDMIEVPHL 535146 >scaffold_28 Length = 614053 Score = 47.4 bits (111), Expect = 3e-05 Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 22/144 (15%) Frame = +1 Query: 15 NLGILGHVDSGKTTLTRRIAE----LGSTSAFDAHATSTTTDG------IRRNTL----- 59 N+ ++ HVD GK+TLT + + A + T T D I+ + Sbjct: 419581 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRQDEQDRCITIKSTAISLYYE 419760 Query: 60 ----DLGFSTMTSLSGRRLA-LIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG--IQPQ 112 D+ + TS L LID PGH V AA V D A+V++D V+G +Q + Sbjct: 419761 LAEEDMKWVKQTSDGNAFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDAVSGVCVQTE 419940 Query: 113 TAEHLLLASKFCPNRVIIVLNKCD 136 T +A + P ++ LNK D Sbjct: 419941 TVLRQAIAERIKP---VLFLNKMD 420003 >scaffold_4 Length = 2081438 Score = 45.8 bits (107), Expect = 1e-04 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 1/64 (1%) Frame = -3 Query: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHL-LLASKFCPNRVIIVL 132 L +ID PGH S++ ++AI+++D++ GI+PQTAE + LL + P II L Sbjct: 1391277 LLVIDTPGHEAFSNLRSRGSSLCNIAILVVDIMHGIEPQTAESIELLRRRKAP--FIIAL 1391104 Query: 133 NKCD 136 NK D Sbjct: 1391103 NKVD 1391092 >scaffold_15 Length = 1049915 Score = 31.2 bits (69), Expect(2) = 0.006 Identities = 13/37 (35%), Positives = 25/37 (67%) Frame = +2 Query: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQ 110 ++ +DCPGH L+ +L + V D A+++I ++G+Q Sbjct: 39686 VSFVDCPGHDILMATMLNGAAVMDAALLLIG-MSGLQ 39793 Score = 26.9 bits (58), Expect(2) = 0.006 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +1 Query: 110 QPQTAEHLLLASKFCPNRVIIVLNKCDL 137 QPQT+EHL +II+ NK DL Sbjct: 39898 QPQTSEHLAAIEIMKLKHIIILQNKIDL 39981 >scaffold_2 Length = 3607471 Score = 33.5 bits (75), Expect = 0.50 Identities = 13/19 (68%), Positives = 16/19 (84%) Frame = -3 Query: 15 NLGILGHVDSGKTTLTRRI 33 N+GI H+DSGKTTLT R+ Sbjct: 1650140 NIGISAHIDSGKTTLTERV 1650084 Score = 33.5 bits (75), Expect = 0.50 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = -2 Query: 64 STMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQT 113 +T T+ + +ID PGH V A V D A++++ V G+Q QT Sbjct: 1649733 ATYTTWKDHNINIIDTPGHVDFTIEVERALRVLDGAVLVLCSVGGVQSQT 1649584 Database: genome.fa Posted date: Jan 19, 2010 5:06 PM Number of letters in database: 41,633,360 Number of sequences in database: 218 Lambda K H 0.322 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,537,581 Number of Sequences: 218 Number of extensions: 325678 Number of successful extensions: 2144 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 1941 Number of HSP's gapped (non-prelim): 533 length of query: 500 length of database: 13,877,786 effective HSP length: 106 effective length of query: 394 effective length of database: 13,854,678 effective search space: 5458743132 effective search space used: 5458743132 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 64 (29.3 bits)