TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000085_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Caenorhabditis elegans # Complete (500 letters) Database: genome.fa 2172 sequences; 20,771,095 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAFB02000464.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 62 8e-10 gb|AAFB02000671.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 60 2e-09 gb|AAFB02000354.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 60 2e-09 gb|AAFB02000159.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 60 3e-09 gb|AAFB02000008.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 55 8e-08 gb|AAFB02000521.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 47 2e-05 gb|AAFB02000115.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 47 2e-05 gb|AAFB02000105.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 47 2e-05 gb|AAFB02000374.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 42 9e-04 gb|AAFB02000260.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 42 9e-04 gb|AAFB02000005.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 41 0.001 gb|AAFB02000027.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 30 2.7 >gb|AAFB02000464.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750512546, whole genome shotgun sequence Length = 11924 Score = 61.6 bits (148), Expect = 8e-10 Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 13/182 (7%) Frame = -3 Query: 72 RRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG----IQPQTAEHLLLASKFCPNR 127 R ++ +DCPGH L+ +L + V D A+++ VAG QPQT+EHL Sbjct: 10509 RHVSFVDCPGHDSLMMTMLTGTAVMDGALLL---VAGNKPCPQPQTSEHLAAVEFMKLKH 10339 Query: 128 VIIVLNKCDLXXXXXXXXXXXXVRKGLKSMGVDENSPIVEMSLADGYFKEEMLQNLKLAI 187 +II+ NK DL K + EN+PI+ + Y + + + + +I Sbjct: 10338 MIILQNKIDLVKTKEDAQKNYQQIKEFVKGSIAENAPIIPICAQLKYNMDVVCEYICHSI 10159 Query: 188 ESRIFEPKRDEEGEFLIAIDHCFAIKGQGT--------VLTGTVIRGVLRLNTEIEF-PA 238 P+RD + + I F I GT V+ GT+ +G+L+L EIE P Sbjct: 10158 P----VPQRDFKVNPRMTIIRSFDINKPGTLPQDLIGGVIGGTLSQGMLKLGDEIEIRPG 9991 Query: 239 LN 240 N Sbjct: 9990 FN 9985 >gb|AAFB02000671.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750515481, whole genome shotgun sequence Length = 6812 Score = 60.5 bits (145), Expect = 2e-09 Identities = 70/274 (25%), Positives = 113/274 (41%), Gaps = 38/274 (13%) Frame = +3 Query: 14 LNLGILGHVDSGKTTLTRRI-------------------AELGSTSAFDAHATSTTTDGI 54 +N+ ++GHVDSGK+T T + AE+G S A Sbjct: 4116 INIVVIGHVDSGKSTTTGHLIYKCGGIDQRTIEKFEKESAEMGKGSFKYAWVLDNLKAER 4295 Query: 55 RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108 R T+D+ + S +ID PGH I+ ++ ++ D+AI+I+ + AG Sbjct: 4296 ERGITIDISLWKFET-SKYYFTIIDAPGHRDFIKNMITGTSQADVAILIVAAGTGEFEAG 4472 Query: 109 IQP--QTAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXX--VRKGLKSMGVDENS- 163 I QT EH+LL+ ++I+ +NK D + LK G + + Sbjct: 4473 ISKNGQTREHILLSYTLGVKQMIVGVNKMDAIQYKQERYEEIKKEISAFLKKTGYNPDKI 4652 Query: 164 PIVEMSLADGYFKEEMLQNLKL--------AIESRIFEPKRDEEGEFLIAIDHCFAIKGQ 215 P V +S G E N+ A++S + P+R + + + + I G Sbjct: 4653 PFVPISGFQGDNMIEPSTNMPWYKGPTLIGALDS-VTPPERPVDKPLRLPLQDVYKISGI 4829 Query: 216 GTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLE 249 GTV G V GVLR T ++F K++E Sbjct: 4830 GTVPCGRVETGVLRPGTIVQFAPSGVSSECKSVE 4931 >gb|AAFB02000354.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750507676, whole genome shotgun sequence Length = 16484 Score = 60.5 bits (145), Expect = 2e-09 Identities = 70/274 (25%), Positives = 113/274 (41%), Gaps = 38/274 (13%) Frame = -3 Query: 14 LNLGILGHVDSGKTTLTRRI-------------------AELGSTSAFDAHATSTTTDGI 54 +N+ ++GHVDSGK+T T + AE+G S A Sbjct: 4290 INIVVIGHVDSGKSTTTGHLIYKCGGIDQRTIEKFEKESAEMGKGSFKYAWVLDNLKAER 4111 Query: 55 RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108 R T+D+ + S +ID PGH I+ ++ ++ D+AI+I+ + AG Sbjct: 4110 ERGITIDISLWKFET-SKYYFTIIDAPGHRDFIKNMITGTSQADVAILIVAAGTGEFEAG 3934 Query: 109 IQP--QTAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXX--VRKGLKSMGVDENS- 163 I QT EH+LL+ ++I+ +NK D + LK G + + Sbjct: 3933 ISKNGQTREHILLSYTLGVKQMIVGVNKMDAIQYKQERYEEIKKEISAFLKKTGYNPDKI 3754 Query: 164 PIVEMSLADGYFKEEMLQNLKL--------AIESRIFEPKRDEEGEFLIAIDHCFAIKGQ 215 P V +S G E N+ A++S + P+R + + + + I G Sbjct: 3753 PFVPISGFQGDNMIEPSTNMPWYKGPTLIGALDS-VTPPERPVDKPLRLPLQDVYKISGI 3577 Query: 216 GTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLE 249 GTV G V GVLR T ++F K++E Sbjct: 3576 GTVPCGRVETGVLRPGTIVQFAPSGVSSECKSVE 3475 >gb|AAFB02000159.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750513490, whole genome shotgun sequence Length = 33909 Score = 59.7 bits (143), Expect = 3e-09 Identities = 68/274 (24%), Positives = 113/274 (41%), Gaps = 38/274 (13%) Frame = +3 Query: 14 LNLGILGHVDSGKTTLTRRI-------------------AELGSTSAFDAHATSTTTDGI 54 +N+ ++GHVDSGK+T T + AE+G S A Sbjct: 13500 INIVVIGHVDSGKSTTTGHLIYKCGGIDQRTIEKFEKESAEMGKGSFKYAWVLDNLKAER 13679 Query: 55 RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108 R T+D+ + S +ID PGH I+ ++ ++ D+AI+I+ + AG Sbjct: 13680 ERGITIDISLWKFET-SKYYFTIIDAPGHRDFIKNMITGTSQADVAILIVAAGTGEFEAG 13856 Query: 109 IQP--QTAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXX--VRKGLKSMGVDENS- 163 I QT EH+LL+ ++I+ +NK D + LK G + + Sbjct: 13857 ISKNGQTREHILLSYTLGVKQMIVGVNKMDAIQYKQERYEEIKKEISAFLKKTGYNPDKI 14036 Query: 164 PIVEMSLADGYFKEEMLQNLKL--------AIESRIFEPKRDEEGEFLIAIDHCFAIKGQ 215 P V +S G E N+ A++S + P+R + + + + I G Sbjct: 14037 PFVPISGFQGDNMIEPSTNMPWYKGPTLIGALDS-VTPPERPVDKPLRLPLQDVYKISGI 14213 Query: 216 GTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLE 249 GTV G V G+L+ T ++F K++E Sbjct: 14214 GTVPVGRVETGILKPGTIVQFAPSGVSSECKSIE 14315 >gb|AAFB02000008.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750512822, whole genome shotgun sequence Length = 118116 Score = 55.1 bits (131), Expect = 8e-08 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 7/126 (5%) Frame = +2 Query: 18 ILGHVDSGKTTLTRRI----AELGSTSAFDAHATST--TTDGIRRNTLDLGFSTMTSLSG 71 +LGHVD+GKT + R+ + G ST D I + T + T Sbjct: 87860 VLGHVDTGKTKILDRMRRTNVQRGEAGGITQQIGSTFFPLDSIEKMTEKMKDKTKLKFKI 88039 Query: 72 RRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHL-LLASKFCPNRVII 130 L ++D PGH +++ D+A++++D++ G++PQT E + LL K P ++ Sbjct: 88040 PGLLVMDTPGHEAFNNLRSRGTSLCDIAVLVVDLMHGLEPQTIESINLLKQKNTP--FVV 88213 Query: 131 VLNKCD 136 LNK D Sbjct: 88214 ALNKID 88231 >gb|AAFB02000521.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750512674, whole genome shotgun sequence Length = 10182 Score = 47.0 bits (110), Expect = 2e-05 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 20/142 (14%) Frame = -1 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDG----------IRRNTLDLGFS 64 N+ ++ HVD GK+TLT + L + + + TD I+ ++ + + Sbjct: 4716 NMCVIAHVDHGKSTLTDSLVTLAGIISNEKAGVARYTDTRPDEQERCITIKSTSISMYYE 4537 Query: 65 TM--------TSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG--IQPQTA 114 + +G + LID PGH V AA V D A+V++D V G +Q +T Sbjct: 4536 IEDKEDIPADANGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETV 4357 Query: 115 EHLLLASKFCPNRVIIVLNKCD 136 L + P I+++NK D Sbjct: 4356 LRQALTERVKP---IVIINKVD 4300 >gb|AAFB02000115.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750510372, whole genome shotgun sequence Length = 41185 Score = 47.0 bits (110), Expect = 2e-05 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 20/142 (14%) Frame = +3 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDG----------IRRNTLDLGFS 64 N+ ++ HVD GK+TLT + L + + + TD I+ ++ + + Sbjct: 15525 NMCVIAHVDHGKSTLTDSLVTLAGIISNEKAGVARYTDTRPDEQERCITIKSTSISMYYE 15704 Query: 65 TM--------TSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG--IQPQTA 114 + +G + LID PGH V AA V D A+V++D V G +Q +T Sbjct: 15705 IEDKEDIPADANGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETV 15884 Query: 115 EHLLLASKFCPNRVIIVLNKCD 136 L + P I+++NK D Sbjct: 15885 LRQALTERVKP---IVIINKVD 15941 >gb|AAFB02000105.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750513086, whole genome shotgun sequence Length = 43065 Score = 47.0 bits (110), Expect = 2e-05 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 20/142 (14%) Frame = +1 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDG----------IRRNTLDLGFS 64 N+ ++ HVD GK+TLT + L + + + TD I+ ++ + + Sbjct: 6193 NMCVIAHVDHGKSTLTDSLVTLAGIISNEKAGVARYTDTRPDEQERCITIKSTSISMYYE 6372 Query: 65 TM--------TSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG--IQPQTA 114 + +G + LID PGH V AA V D A+V++D V G +Q +T Sbjct: 6373 IEDKEDIPADANGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETV 6552 Query: 115 EHLLLASKFCPNRVIIVLNKCD 136 L + P I+++NK D Sbjct: 6553 LRQALTERVKP---IVIINKVD 6609 >gb|AAFB02000374.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750504755, whole genome shotgun sequence Length = 15600 Score = 41.6 bits (96), Expect = 9e-04 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 26/150 (17%) Frame = -3 Query: 13 PLNLGILGHVDSGK-TTLTRRIAELGSTS-----------------AFDAHATSTTTDGI 54 PL + GHVDSGK TT+ + ELG + +F+ +A TD Sbjct: 12712 PLTVIFCGHVDSGKSTTVGHILQELGGVTHSQIEKNKKECGEKGKKSFE-YAWVMDTDDE 12536 Query: 55 RRN---TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQP 111 RN T+ +G + + + + ++D PGH+ + + A D+A+V++DV Sbjct: 12535 ERNRGITISVG-AVEFQYNHKNIRILDAPGHTDFLMKTIDAMNEADVAVVVVDVDKHNLK 12359 Query: 112 QTAEHLLL-----ASKFCPNRVIIVLNKCD 136 T E L + +++I+ +NK D Sbjct: 12358 CTYEGTFLDIVSTLAYSTVSKIIVAINKMD 12269 >gb|AAFB02000260.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750513572, whole genome shotgun sequence Length = 22950 Score = 41.6 bits (96), Expect = 9e-04 Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 27/149 (18%) Frame = +1 Query: 15 NLGILGHVDSGKTTLTRRIA------ELGSTSAFDAHATSTTTDG--------------I 54 N+ +GHVD+GK+T + I E F+ A + Sbjct: 14317 NIIFIGHVDAGKSTTSGNILFQSGNIEQRIIDKFEKEAKENQRESWWLAYIMDQIEEEKS 14496 Query: 55 RRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG------ 108 + T+D+G + RR ++D PGH + +++A+ D+A++I+ G Sbjct: 14497 KGITIDVG-RALFETEKRRYTILDAPGHRSFVPNMISAAAQADIAVLIVSARKGEFETGF 14673 Query: 109 -IQPQTAEHLLLASKFCPNRVIIVLNKCD 136 QT EH L VII +NK D Sbjct: 14674 DKGGQTREHSQLCRTAGVKTVIIAVNKMD 14760 >gb|AAFB02000005.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750512920, whole genome shotgun sequence Length = 129391 Score = 41.2 bits (95), Expect = 0.001 Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 8/130 (6%) Frame = +3 Query: 15 NLGILGHVDSGKTTLTRRIA--------ELGSTSAFDAHATSTTTDGIRRNTLDLGFSTM 66 N+ +L HVD GKT++ + +L + + I T + T Sbjct: 100269 NICVLAHVDHGKTSICDALIASNGIISKKLSGKVRYLDYRDDEQVRQITMKTSSISLYTQ 100448 Query: 67 TSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPN 126 L L+D PGH V +A + D A++++D + G+ QT L A+ Sbjct: 100449 LGDQHHLLNLVDSPGHVDFSGEVSSAVRLTDGALLVVDCIEGVCVQTQTVLRQAASE-GL 100625 Query: 127 RVIIVLNKCD 136 ++I+++NK D Sbjct: 100626 QMILIINKID 100655 >gb|AAFB02000027.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750511522, whole genome shotgun sequence Length = 73698 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%) Frame = +2 Query: 348 CQVLFSFEKSIFLPE----------NYSNPFMAARLEQQPGSGCRFAFSGIFSQILPENG 397 CQ++ S K +FLP+ N ++ P CRF+ + I S LPENG Sbjct: 69926 CQIVLSDTKCMFLPDLSQNSKLTSLNVIRGYLNEVKSLPPNCSCRFSNNQIESIELPENG 70105 Database: genome.fa Posted date: Jan 19, 2010 5:04 PM Number of letters in database: 20,771,095 Number of sequences in database: 2172 Lambda K H 0.322 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,413,863 Number of Sequences: 2172 Number of extensions: 100906 Number of successful extensions: 406 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 20 Number of HSP's that attempted gapping in prelim test: 302 Number of HSP's gapped (non-prelim): 132 length of query: 500 length of database: 6,923,698 effective HSP length: 101 effective length of query: 399 effective length of database: 6,704,326 effective search space: 2675026074 effective search space used: 2675026074 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 61 (28.1 bits)