TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000085_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Caenorhabditis elegans # Complete (500 letters) Database: genome.fa 799 sequences; 32,967,507 total letters Searching.....................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_198 98 3e-24 scaffold_265 67 2e-11 scaffold_25 61 2e-09 scaffold_6 55 1e-07 scaffold_75 52 1e-06 scaffold_168 49 7e-06 scaffold_337 49 1e-05 scaffold_140 49 1e-05 scaffold_516 45 1e-04 scaffold_192 45 1e-04 scaffold_39 42 8e-04 scaffold_479 41 0.002 scaffold_285 38 0.021 scaffold_202 38 0.021 scaffold_413 37 0.047 scaffold_272 31 2.0 scaffold_79 30 5.7 scaffold_751 29 7.4 >scaffold_198 Length = 58540 Score = 98.2 bits (243), Expect(2) = 3e-24 Identities = 70/269 (26%), Positives = 120/269 (44%), Gaps = 32/269 (11%) Frame = -3 Query: 180 LQNLKLAIESRIFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPAL 239 L L + + PKR+E+G+ L DHCF IKGQG+VLTGT++RG + +N I+ P L Sbjct: 13280 LNELYKELNKYLVVPKREEKGDLLFEFDHCFQIKGQGSVLTGTILRGTIEVNQTIQIPQL 13101 Query: 240 NEKRRVKTLETWKXXXXXXXXXXXXXFLVAPSFDEHRFSRCICGPLGTLKSTKFVLATVE 299 N +++VK+++ + V D R + ++ S L ++E Sbjct: 13100 NLEKKVKSMQMFHKPIKKAIQGDRVGVCVT-QLDSKLLERGLVCSNNSIPSLSSALISIE 12924 Query: 300 PIQFFRKSINSKSKIHVAVAFETVMAECQF----LKEKENG-------------EFEMLP 342 ++F++ +++KSK H+ + TV+A + + NG E+ Sbjct: 12923 KVRFYKSEVHTKSKFHITIGHSTVIASLTYFSAIVPNSNNGSGDNNNSTFNYSNEYIYQD 12744 Query: 343 SLLAPCQ--------VLFSFEKSIFLPENYSNPFMAARLEQQPGS-GCRFAFSGIFSQIL 393 +L A L F+ I P N + + ++L+ S GCR AF G + + Sbjct: 12743 TLNATSPEFPVGSQFALIKFDHPILCPLN--SVIIGSKLDVSTDSTGCRIAFHGTLIEGV 12570 Query: 394 PENGKNLPPRFTR------KCRKGHVERV 416 + N ++ K ++G VERV Sbjct: 12569 DDKSPNSKQSLSKLKIYKTKSKQGQVERV 12483 Score = 79.0 bits (193), Expect = 8e-15 Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 23/125 (18%) Frame = -1 Query: 14 LNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTM------- 66 +N+GI+GH+DSGKT+L + ++ ST++ D S +R TLDLGFS+ Sbjct: 13960 INIGIMGHIDSGKTSLAKALSTNLSTASLDKSPESR----MRGITLDLGFSSFQLNRELL 13793 Query: 67 --------TSLSGRRL--------ALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQ 110 +S G ++ L+DCPGH+ LIR ++ S + DM ++ID+ GIQ Sbjct: 13792 NNAIGNDESSSWGNKIDNNQNIQITLVDCPGHASLIRTIIGGSQIIDMMFLVIDINKGIQ 13613 Query: 111 PQTAE 115 QTAE Sbjct: 13612 TQTAE 13598 Score = 32.7 bits (73), Expect(2) = 3e-24 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = -2 Query: 428 MFKAETNFDVFRGFQICTSSGPRGKIEGAFGKSGKFRVTFAEKI 471 +FK +++ F G ++ +G G IE +FGK GK ++ + Sbjct: 12378 LFKKDSDMTSFIGMKVVFETGETGIIESSFGKGGKTKIQLLNNV 12247 >scaffold_265 Length = 46663 Score = 67.4 bits (163), Expect = 2e-11 Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 4/151 (2%) Frame = +1 Query: 14 LNLGILGHVDSGKTTLTRRIAELGSTSA---FDAHATSTTTDGIRRNTLDLGFSTMTSLS 70 +N+G +GHVD GKTTLT I + S F ++ + R + + S + S Sbjct: 38755 VNVGTIGHVDHGKTTLTAAITKTLSDRGLANFKSYNQIDKSPEERARGITITASHIEYES 38934 Query: 71 -GRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVI 129 R A IDCPGH I+ ++ + D AI+++ G Q QT EH++L+ + +I Sbjct: 38935 PNRHYAHIDCPGHQHYIKNMITGAAQMDGAILVVSAPDGPQEQTREHVILSREVGIPAII 39114 Query: 130 IVLNKCDLXXXXXXXXXXXXVRKGLKSMGVD 160 + LNK D VR+ L G D Sbjct: 39115 VFLNKMDNADPDLVEIVEMEVRELLSKYGFD 39207 >scaffold_25 Length = 142329 Score = 61.2 bits (147), Expect = 2e-09 Identities = 67/275 (24%), Positives = 106/275 (38%), Gaps = 39/275 (14%) Frame = +3 Query: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54 +N+ ++GHVD+GK+T T + AE+G S A Sbjct: 18477 INIVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKYEKEAAEMGKQSFKYAWVMDKLKAER 18656 Query: 55 RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108 R T+D+ + + +ID PGH I+ ++ ++ D A+++I + AG Sbjct: 18657 ERGITIDIALWKFET-NKYYFTIIDAPGHRDFIKNMITGTSQADCAVLVIASPTGEFEAG 18833 Query: 109 IQP--QTAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXXVRKGLKSM--GVDENSP 164 I QT EH LLA ++I+ +NK D + K S + N Sbjct: 18834 IAKNGQTREHALLAYTLGVKQMIVAINKMDEKSTNYSKARYDEIVKETSSFIKKIGYNPE 19013 Query: 165 IVEMSLADGYFKEEMLQNLK----------LAIESRIFEPKRDEEGEFLIAIDHCFAIKG 214 V G+ + ML+ L I EPKR E I + + I G Sbjct: 19014 KVSFVPISGWNGDNMLERSTNMPWYTGPTLLEALDAIVEPKRPVEKPLRIPLQDVYKIGG 19193 Query: 215 QGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLE 249 GTV G V G+++ + F VK++E Sbjct: 19194 IGTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSVE 19298 >scaffold_6 Length = 201738 Score = 55.1 bits (131), Expect = 1e-07 Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 10/129 (7%) Frame = +1 Query: 18 ILGHVDSGKTTLTRRIAELGSTSAFDAHATSTT---------TDGIRRNTLDLGFSTMTS 68 ILGHVD+GKT+L RI +T+ A T D I+ T Sbjct: 17902 ILGHVDTGKTSLLDRIR---NTNVQGGEARGITQQIGASFIPVDAIKEQTKTFAEKLKMD 18072 Query: 69 LSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHL-LLASKFCPNR 127 L LID PGH S + D+AI++ID++ G++ QT E + LL + P Sbjct: 18073 FKLPGLLLIDTPGHESFNNLRSRGSGLCDLAILVIDIMHGLEAQTIESINLLRMRKTP-- 18246 Query: 128 VIIVLNKCD 136 I+ LNK D Sbjct: 18247 FIVALNKVD 18273 >scaffold_75 Length = 94647 Score = 52.0 bits (123), Expect = 1e-06 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 12/168 (7%) Frame = +3 Query: 80 PGHSGLIRAVLAASTVFDMAIVIIDVVAGI-QPQTAEHLLLASKFCPNRVIIVLNKCDLX 138 PGH L+ +L + V D A+++I QPQT+EH+ +II+ NK DL Sbjct: 74013 PGHDVLMATMLNGAAVMDAALLLIAGNESCPQPQTSEHIAAIEIMNLKNIIILQNKIDLV 74192 Query: 139 XXXXXXXXXXXVRKGLKSMGVDENSPIVEMSLADGYFKEEMLQNLKLAIE---SRIFEPK 195 + K ++ + EN+PI+ +S +M N+ + E +I P Sbjct: 74193 KEAAAQEQYGQILKFVQGT-IAENAPIIPIS-------AQMKYNIDVICEYIVKKIPIPL 74348 Query: 196 RDEEGEFLIAIDHCFAIKGQGT--------VLTGTVIRGVLRLNTEIE 235 RD + + + F + G+ V G++++GVLRL EIE Sbjct: 74349 RDFTSDPHMIVIRSFDVNKPGSRVDEIKGGVAGGSILKGVLRLGDEIE 74492 >scaffold_168 Length = 64553 Score = 49.3 bits (116), Expect = 7e-06 Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 1/161 (0%) Frame = -3 Query: 70 SGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVI 129 SG+ + +D PGH+ ++ D+A++I+ G+Q QT E + A K ++++ Sbjct: 18852 SGKNITFMDTPGHAAFATMRERGVSMTDIALLIVAGDDGVQEQTIE-AIKAIKKSGSQMV 18676 Query: 130 IVLNKCDLXXXXXXXXXXXXVRKGLKSMGVDENSPIVEMSLADGYFKEEMLQNLKLAIE- 188 + +NK D G+ G+ P VE+S G +++ + + L + Sbjct: 18675 VAINKMDKPGIDANLIRYELAEHGVNCEGIGGEVPCVEISAKTGLGVDKLKETIILLSDI 18496 Query: 189 SRIFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLR 229 + P +D + ++ I+ F K +GT T V +GVL+ Sbjct: 18495 MELKAPTKDVQPSGVV-IESTFK-KNRGTFSTILVQKGVLK 18379 >scaffold_337 Length = 35213 Score = 48.5 bits (114), Expect = 1e-05 Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 25/149 (16%) Frame = -1 Query: 14 LNLGILGHVDSGK-TTLTRRIAELGST-----SAFDAHATSTTTDGI------------- 54 LN+ ++GHVD+GK TT+ + +LG+ S F+ + Sbjct: 15326 LNMVVIGHVDAGKSTTMGHILFKLGNVDKRTMSKFEHESNRMGKSSFHFAWVLDEHDEER 15147 Query: 55 -RRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII---DVVAGI- 109 R T+D+ + R++ L+D PGH I +++ +T D+A+++I + AG Sbjct: 15146 ERGVTMDVCVRYFET-PHRKITLLDAPGHRDFIPNMISGTTQADVAVLLINANEFEAGFS 14970 Query: 110 -QPQTAEHLLLASKFCPNRVIIVLNKCDL 137 + QT EH LLA +I+ +NK D+ Sbjct: 14969 GEGQTKEHALLAKSLGIMELIVAVNKMDM 14883 >scaffold_140 Length = 71951 Score = 48.5 bits (114), Expect = 1e-05 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 9/108 (8%) Frame = -1 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDL---------GFST 65 N+GI H+DSGKTTLT RI G + +++DL +T Sbjct: 28691 NIGISAHIDSGKTTLTERILYYTGRIKEIHEVRGKDGVGAKMDSMDLEREKGITIQSAAT 28512 Query: 66 MTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQT 113 + +ID PGH V A V D A++++ V+G+Q QT Sbjct: 28511 YCKWGENHINIIDTPGHVDFTIEVERALRVLDGAVLVMCGVSGVQSQT 28368 >scaffold_516 Length = 18146 Score = 45.4 bits (106), Expect = 1e-04 Identities = 42/148 (28%), Positives = 60/148 (40%), Gaps = 25/148 (16%) Frame = +1 Query: 15 NLGILGHVDSGKTTLTRRIAELGST-------SAFDAHATSTTTDGIRRNTLD------- 60 N I+ H+D GKTTL+ ++ L T S D+ + R LD Sbjct: 1384 NFSIIAHIDHGKTTLSTKLLSLTGTLPEKIYGSGEDSLVQKEKNEDRREQYLDKLQVEKE 1563 Query: 61 ----LGFSTMTSLSGRR-------LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGI 109 + T T + + L LID PGH V + A++++D V G+ Sbjct: 1564 RGITVKAQTCTMIYRNKEDGKDYLLNLIDTPGHVDFNYEVSRSLMACQGALLVVDAVQGV 1743 Query: 110 QPQTAEHLLLASKFCPNRVIIVLNKCDL 137 Q QT + LA VI V+NK DL Sbjct: 1744 QAQTMANFYLALD-AGLEVIPVINKIDL 1824 >scaffold_192 Length = 59409 Score = 45.4 bits (106), Expect = 1e-04 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 28/151 (18%) Frame = +1 Query: 14 LNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRN---------------- 57 +NL LGHVD+GK+TL+ I L T D+H + + N Sbjct: 35263 VNLVFLGHVDAGKSTLSGSIMVL--TGQVDSHTLAKYEREAKENHRESWIFAYIMDTNEE 35436 Query: 58 ------TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVV 106 T+++G + + +R ++D PGH + ++ + D+ I+++ + Sbjct: 35437 ERTKGKTVEVGRAHFET-EKKRFTILDAPGHRLYVPNMIVGAAQADVGILVVSSKKGEFE 35613 Query: 107 AGIQ-PQTAEHLLLASKFCPNRVIIVLNKCD 136 AG+ QT EH LA +++I +NK D Sbjct: 35614 AGVDGGQTVEHARLAKMIGLKQLVIFVNKMD 35706 >scaffold_39 Length = 122440 Score = 42.4 bits (98), Expect = 8e-04 Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 16/138 (11%) Frame = -1 Query: 15 NLGILGHVDSGKTTLTRRIAE---------LGSTSAFDAHATSTTTD-GIRRNTLDLGFS 64 N+ IL HVD GKTTL+ + G+ D A+ + ++ + + L F Sbjct: 35272 NICILAHVDHGKTTLSDCLISSNGIISPQMAGNLRYLDFLASEQEREITMKASAISLLFQ 35093 Query: 65 TM-----TSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLL 119 T + LID PGH V A + D ++V++DVV G+ QT H +L Sbjct: 35092 KKCEEDETKQDSYLINLIDSPGHVDFSSEVSTAVRITDGSLVLVDVVEGVCIQT--HAVL 34919 Query: 120 ASKFCPN-RVIIVLNKCD 136 + + +VLNK D Sbjct: 34918 KQAYQEKVKPCLVLNKID 34865 >scaffold_479 Length = 21072 Score = 40.8 bits (94), Expect = 0.002 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Frame = +1 Query: 15 NLGILGHVDSGKTTLT----RRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLS 70 N+ I+ HVD GKT+L R+ + T + S + R T+ + T Sbjct: 11635 NVAIIAHVDHGKTSLVDQLLRQSGAIKETEKDERVMDSNQLEKERGITI-MAKCTSFDYK 11811 Query: 71 GRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVII 130 +L ++D PGH V ++ D ++++D G QT + +L + + I+ Sbjct: 11812 NHKLNIVDTPGHGDFGGEVERVLSMVDGVVLLVDATEGPMAQT-KFVLSKALGAGLKPIV 11988 Query: 131 VLNKCD 136 V+NK D Sbjct: 11989 VINKLD 12006 >scaffold_285 Length = 43506 Score = 37.7 bits (86), Expect = 0.021 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 4/98 (4%) Frame = +3 Query: 43 DAHATSTTTDGI---RRNTLDLGFSTMT-SLSGRRLALIDCPGHSGLIRAVLAASTVFDM 98 + H T D + R + +G +T+T S R+ ++D PGH V + V D Sbjct: 35433 EVHKGDTVMDYLKLERERGITIGAATVTIPWSDHRINIVDTPGHVDFTVEVERSVRVIDG 35612 Query: 99 AIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLNKCD 136 ++ I D VAG+Q Q+ + ++ R+ + NK D Sbjct: 35613 SVAIFDGVAGVQAQSITVWNQSERYSVPRIAFI-NKMD 35723 >scaffold_202 Length = 57938 Score = 37.7 bits (86), Expect = 0.021 Identities = 18/61 (29%), Positives = 34/61 (55%) Frame = -1 Query: 76 LIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLNKC 135 ++D PGH + V A+ + D+ +V+ID + G+ QT E L+ + + +++NK Sbjct: 48674 ILDTPGHPNFLDEVTASLAISDIGVVVIDALEGVMLQT-ERLIKHAVSEGLAICVIINKV 48498 Query: 136 D 136 D Sbjct: 48497 D 48495 >scaffold_413 Length = 27503 Score = 36.6 bits (83), Expect = 0.047 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Frame = +2 Query: 76 LIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG--IQPQTAEHLLLASKFCPNRVIIVLN 133 LID PGH V AA V D A+V++D V G +Q +T +A + P ++ +N Sbjct: 12647 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGCCVQTETVLRQAVAERIKP---VLFVN 12817 Query: 134 KCD 136 K D Sbjct: 12818 KVD 12826 >scaffold_272 Length = 44938 Score = 31.2 bits (69), Expect = 2.0 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 4/98 (4%) Frame = +1 Query: 15 NLGILGHVDSGKTTLTRRIAE-LGSTSAFDAHATSTTTDGIRRNTLDLGFSTM--TSLSG 71 N +L +++GKT++ +R+ + G + I T L F+++ T LS Sbjct: 13243 NFFLLVRINNGKTSIFKRLVKKAGVVNDGTVVEEDKLNSEINEITTKLQFNSIFFTELSK 13422 Query: 72 RR-LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG 108 + LID PGH L V+A + D ++ ++D G Sbjct: 13423 EYYINLIDTPGHLDLKAQVVAGLRITDGSLFVVDGFEG 13536 >scaffold_79 Length = 90002 Score = 29.6 bits (65), Expect = 5.7 Identities = 19/69 (27%), Positives = 32/69 (46%) Frame = -2 Query: 288 LKSTKFVLATVEPIQFFRKSINSKSKIHVAVAFETVMAECQFLKEKENGEFEMLPSLLAP 347 LK+ KF + V+ + F KS I ++ F ++ L ++ N F + + + P Sbjct: 86602 LKNLKFNVINVKTLYQFLKSSPKLKDISFSICFHNLIYN---LNKRYNSSFGLDATPMVP 86432 Query: 348 CQVLFSFEK 356 C SFEK Sbjct: 86431 CNCSDSFEK 86405 >scaffold_751 Length = 5520 Score = 29.3 bits (64), Expect = 7.4 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = -2 Query: 18 ILGHVDSGKTTLTRRIAELGSTSAFD 43 ILG+ +SGKTTL R++ L T A D Sbjct: 3275 ILGNTESGKTTLQRQLDILYGTEALD 3198 Database: genome.fa Posted date: Jan 16, 2009 12:50 PM Number of letters in database: 32,967,507 Number of sequences in database: 799 Lambda K H 0.322 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,371,296 Number of Sequences: 799 Number of extensions: 158336 Number of successful extensions: 612 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 555 Number of HSP's gapped (non-prelim): 96 length of query: 500 length of database: 10,989,169 effective HSP length: 105 effective length of query: 395 effective length of database: 10,905,274 effective search space: 4307583230 effective search space used: 4307583230 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 63 (28.9 bits)