TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000108_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Mus musculus # Complete
         (452 letters)

Database: genome.fa 
           5578 sequences; 78,051,097 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQY01000032.1| Phytophthora sojae strain P6497 Psojae_Cont32...   195   7e-75
gb|AAQY01005312.1| Phytophthora sojae strain P6497 Psojae_Cont53...    32   2.3  
gb|AAQY01000807.1| Phytophthora sojae strain P6497 Psojae_Cont80...    31   5.2  
gb|AAQY01001206.1| Phytophthora sojae strain P6497 Psojae_Cont12...    30   6.7  

>gb|AAQY01000032.1| Phytophthora sojae strain P6497 Psojae_Cont32, whole genome shotgun
              sequence
          Length = 143152

 Score =  195 bits (496), Expect(2) = 7e-75
 Identities = 116/307 (37%), Positives = 159/307 (51%), Gaps = 26/307 (8%)
 Frame = +3

Query: 30     SAGRSFSNYRPFEPQTLGFSPSWRLTSFSGMKGUGCKVPQETLLKLLEGLTRPALQPPLT 89
              +A ++ S+   F+P  LG    + LT+FS +KG GCK+PQ  LL  L+ L          
Sbjct: 133143 TAPQTSSDAAAFDPVELGLESDFVLTNFSALKGCGCKLPQAKLLGYLDNLA--------- 133295

Query: 90     SXXXXXXXXXXXXXXXSTRPGPGSAFPSLSIGMDSCVIPLRHG-GLSLVQTTDFFYPLVE 148
                                        P+ + GMDS V+ + HG  L LV TTDFF+P VE
Sbjct: 133296 ----------------------NDLKPNETPGMDSSVVKISHGQDLYLVSTTDFFFPSVE 133409

Query: 149    DPYMMGRIACANVLSDLYAMGITECDNXXXXXXXXXXXXEKEREKVTPLMIKGFRDXXXX 208
              DPY+ G+IACANVLSD+YAMG+TE D             EK+R+ VT  MI+GF D    
Sbjct: 133410 DPYVQGKIACANVLSDVYAMGVTEVDTMLMILGVCRDMSEKQRDVVTTQMIRGFNDLARR 133589

Query: 209    XXXXXXXXXXXXNPWIIIGGVA------------------------TVVC-QQNEFIMPD 243
                          NPW I+GGVA                          VC  +++ I P+
Sbjct: 133590 AQTNVTGGQTVMNPWPIVGGVAMSVRSGRCSRSQ*KSVASLQYSC*LAVC*AESQIIRPE 133769

Query: 244    SAVVGDVLVLTKPLGTQVAANAHQWLDNPEKWNKIKMVVSREEVELAYQEAMFNMATLNR 303
              +AVVGDV++LTKPLGTQVA N  QW   PE+W+++  VV+ E+ ++A++ A  +M+ LN 
Sbjct: 133770 NAVVGDVIILTKPLGTQVAVNLFQWKKKPERWHRVDKVVTPEDADVAFRMASESMSRLNL 133949

Query: 304    TAAGLMH 310
               AA +MH
Sbjct: 133950 NAAKMMH 133970



 Score =  105 bits (263), Expect(2) = 7e-75
 Identities = 55/124 (44%), Positives = 75/124 (60%), Gaps = 1/124 (0%)
 Frame = +2

Query: 308    LMHTFNAHAATDITGFGILGHSQNLAKQQKNEVSFVIHNLPXXXXXXXXXXXXGR-FGLL 366
              L+  + AH+ATD+TGFGIL H++N AK Q  +VSF +H LP            G  F LL
Sbjct: 134033 LLVQYGAHSATDVTGFGILAHARNQAKSQLGDVSFELHTLPIIKNMVKVNETIGNSFKLL 134212

Query: 367    QGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVI 426
               G +AETSGGLL+CLP E A  F  E++     +G  AW+VG V  G++ A I+  P ++
Sbjct: 134213 DGFAAETSGGLLLCLPAENADAFIKELREL---DGMPAWVVGRVVAGSKDAHIVPNPTIL 134383

Query: 427    EVLP 430
              E+ P
Sbjct: 134384 EISP 134395


>gb|AAQY01005312.1| Phytophthora sojae strain P6497 Psojae_Cont5312, whole genome
           shotgun sequence
          Length = 823

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 17/65 (26%), Positives = 35/65 (53%)
 Frame = +3

Query: 244 SAVVGDVLVLTKPLGTQVAANAHQWLDNPEKWNKIKMVVSREEVELAYQEAMFNMATLNR 303
           ++V+  ++ LT PL ++  ANA + LDN + +  +K   SR    + +    F +++ N 
Sbjct: 330 TSVLTTLITLTGPLCSEAVANAKRLLDNKKNYYLLKAPRSRVLFGVLFNATKFVISSTNS 509

Query: 304 TAAGL 308
            +A +
Sbjct: 510 NSASI 524


>gb|AAQY01000807.1| Phytophthora sojae strain P6497 Psojae_Cont807, whole genome shotgun
              sequence
          Length = 190611

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -2

Query: 250    VLVLTKPLGTQVAANAHQWLDNPEKWNKIKMVVSREEVELAYQEAMFNMATLNRTAAGL 308
              ++ LT PL ++  ANA + LDN + +  +K   SR    + +    F +A+ N  +A +
Sbjct: 105074 LITLTGPLCSEAVANAKRLLDNKKNYYLLKAPRSRVLFGVLFNATKFVIASTNINSASI 104898


>gb|AAQY01001206.1| Phytophthora sojae strain P6497 Psojae_Cont1206, whole genome shotgun
            sequence
          Length = 23878

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 152  MMGRIACANVLSDLYAMGITEC 173
            M    ACAN+L+D+ AMG++EC
Sbjct: 2745 MCASSACANLLADVEAMGLSEC 2680


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:09 PM
  Number of letters in database: 78,051,097
  Number of sequences in database:  5578
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,338,674
Number of Sequences: 5578
Number of extensions: 489200
Number of successful extensions: 2328
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 1851
Number of HSP's gapped (non-prelim): 934
length of query: 452
length of database: 26,017,032
effective HSP length: 110
effective length of query: 342
effective length of database: 25,403,452
effective search space: 8687980584
effective search space used: 8687980584
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)