TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000108_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Mus musculus # Complete (452 letters) Database: genome.fa 218 sequences; 41,633,360 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_11 74 3e-13 scaffold_25 32 1.3 scaffold_20 29 8.3 scaffold_2 29 8.3 >scaffold_11 Length = 1136692 Score = 73.9 bits (180), Expect = 3e-13 Identities = 32/43 (74%), Positives = 37/43 (86%) Frame = -3 Query: 133 GLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDN 175 G ++QTTDFFYPLV+DPY+ GRIA ANVLSDLYAMG+ CDN Sbjct: 112619 GSRIMQTTDFFYPLVDDPYVQGRIAAANVLSDLYAMGVEHCDN 112491 Score = 69.3 bits (168), Expect = 7e-12 Identities = 55/167 (32%), Positives = 68/167 (40%), Gaps = 70/167 (41%) Frame = -2 Query: 221 NPWIIIGGVATVVCQQNEFIM--------------------------------------P 242 NPW+I+GGVA+ VC+ ++IM P Sbjct: 112134 NPWMIVGGVASSVCKPQDYIMLVMYGPRFFDEPCPPFAHHMVHFSFLPLL*CLRPFFTRP 111955 Query: 243 DSAVVGDVLVLTKPLGTQVAANAHQWLDNPE-------KWNK------------------ 277 GDVLVLTKPLGTQ A NAHQWL P N+ Sbjct: 111954 TGGQAGDVLVLTKPLGTQPAVNAHQWLGTPGFDR*VGLPLNRLHCLL*SLFEQK*FMVML 111775 Query: 278 ---IKMVVSREEVELAYQEAMFNMATLNRTAAG----LMHTFNAHAA 317 IK V++ E+V+ Y AM +MA LNR AAG L+ N H A Sbjct: 111774 PV*IKDVMTPEQVKRTYDMAMASMAKLNRRAAGKASPLLLLSNQHGA 111634 Score = 58.9 bits (141), Expect = 1e-08 Identities = 27/45 (60%), Positives = 33/45 (73%) Frame = -3 Query: 304 TAAGLMHTFNAHAATDITGFGILGHSQNLAKQQKNEVSFVIHNLP 348 +A GLM + AH ATD+TGFGILGH+QNLA+ Q EV V+ LP Sbjct: 111599 SAQGLMRKYGAHGATDVTGFGILGHAQNLAEAQTAEVDLVLDMLP 111465 Score = 43.5 bits (101), Expect = 4e-04 Identities = 24/51 (47%), Positives = 30/51 (58%) Frame = -2 Query: 363 FGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEKG 413 F LL+G SAETSGGLL+ LP QAA F E++ + W +G V G Sbjct: 111315 FKLLEGFSAETSGGLLVMLPAHQAAAFMRELQDI---DNFPCWQIGRVVAG 111172 >scaffold_25 Length = 667690 Score = 32.0 bits (71), Expect = 1.3 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = +2 Query: 375 GGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEKG 413 G L++ LP +++ FCS+ K + +G G+VE G Sbjct: 190223 GALVLLLPPHESSSFCSQTKKRRLEQGASFQAAGVVEAG 190339 >scaffold_20 Length = 720398 Score = 29.3 bits (64), Expect = 8.3 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Frame = +1 Query: 363 FGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKY---GEGHQAWIVGIVEKGNRTARI 419 F L G+S S L C +A R C ++ S + G H +W+ ++KG+ T R+ Sbjct: 204124 FFFLSGSSLGGSLEHLCCSASPEAFRNCMHLRVSGHAPQGVNHGSWVQL*IDKGSHTRRL 204303 >scaffold_2 Length = 3607471 Score = 29.3 bits (64), Expect = 8.3 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +1 Query: 250 VLVLTKPLGTQVAANAHQWLDNPEKWNKIKMVVS 283 ++ L + + T+ +A QW DN W IKM+ S Sbjct: 2745415 LIPLAQAMATRDSAVVQQWADNNPHWQTIKMLAS 2745516 Database: genome.fa Posted date: Jan 19, 2010 5:06 PM Number of letters in database: 41,633,360 Number of sequences in database: 218 Lambda K H 0.319 0.136 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,557,755 Number of Sequences: 218 Number of extensions: 334179 Number of successful extensions: 1374 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 1188 Number of HSP's gapped (non-prelim): 453 length of query: 452 length of database: 13,877,786 effective HSP length: 105 effective length of query: 347 effective length of database: 13,854,896 effective search space: 4807648912 effective search space used: 4807648912 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 63 (28.9 bits)