TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Homo sapiens # Complete
         (448 letters)

Database: genome.fa 
           5578 sequences; 78,051,097 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQY01000032.1| Phytophthora sojae strain P6497 Psojae_Cont32...   191   1e-76
gb|AAQY01001927.1| Phytophthora sojae strain P6497 Psojae_Cont19...    37   0.071
gb|AAQY01001206.1| Phytophthora sojae strain P6497 Psojae_Cont12...    30   6.7  

>gb|AAQY01000032.1| Phytophthora sojae strain P6497 Psojae_Cont32, whole genome shotgun
              sequence
          Length = 143152

 Score =  191 bits (485), Expect(2) = 1e-76
 Identities = 119/307 (38%), Positives = 157/307 (51%), Gaps = 26/307 (8%)
 Frame = +3

Query: 27     TLGRSFSNYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQEALLKLLAGLTRPDVRPPLG 86
              T  ++ S+   F+P  LGL   + LT FS +KG GCK+PQ  LL  L  L   D++P   
Sbjct: 133143 TAPQTSSDAAAFDPVELGLESDFVLTNFSALKGCGCKLPQAKLLGYLDNLAN-DLKP--- 133310

Query: 87     RGLVGGQEEASQEAGLPAGAGPSPTFPALGIGMDSCVIPLRHG-GLSLVQTTDFFYPLVE 145
                                    +P       GMDS V+ + HG  L LV TTDFF+P VE
Sbjct: 133311 --------------------NETP-------GMDSSVVKISHGQDLYLVSTTDFFFPSVE 133409

Query: 146    DPYMMGRIACANVLSDLYAMGITECDNXXXXXXXXXXXXXXXREKVTPLMVKGFRDXXXX 205
              DPY+ G+IACANVLSD+YAMG+TE D                R+ VT  M++GF D    
Sbjct: 133410 DPYVQGKIACANVLSDVYAMGVTEVDTMLMILGVCRDMSEKQRDVVTTQMIRGFNDLARR 133589

Query: 206    XXXXXXXXXXXXNPWIIIGGVAT------------------------VVC-QPNEFIMPD 240
                          NPW I+GGVA                          VC   ++ I P+
Sbjct: 133590 AQTNVTGGQTVMNPWPIVGGVAMSVRSGRCSRSQ*KSVASLQYSC*LAVC*AESQIIRPE 133769

Query: 241    SAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVKMVVSREEVELAYQEAMFNMATLNR 300
              +AVVGDV++LTKPLGTQVAVN  QW   PERW++V  VV+ E+ ++A++ A  +M+ LN 
Sbjct: 133770 NAVVGDVIILTKPLGTQVAVNLFQWKKKPERWHRVDKVVTPEDADVAFRMASESMSRLNL 133949

Query: 301    TAAGLMH 307
               AA +MH
Sbjct: 133950 NAAKMMH 133970



 Score =  116 bits (290), Expect(2) = 1e-76
 Identities = 59/124 (47%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
 Frame = +2

Query: 305    LMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAVSKASGR-FGLL 363
              L+  + AH+ATD+TGFGIL H++N AK Q  +VSF +H LPII  M  V++  G  F LL
Sbjct: 134033 LLVQYGAHSATDVTGFGILAHARNQAKSQLGDVSFELHTLPIIKNMVKVNETIGNSFKLL 134212

Query: 364    QGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVI 423
               G +AETSGGLL+CLP E A  F  E++     +G  AW+VG V  G++ A I+  P ++
Sbjct: 134213 DGFAAETSGGLLLCLPAENADAFIKELREL---DGMPAWVVGRVVAGSKDAHIVPNPTIL 134383

Query: 424    EVLP 427
              E+ P
Sbjct: 134384 EISP 134395


>gb|AAQY01001927.1| Phytophthora sojae strain P6497 Psojae_Cont1927, whole genome shotgun
            sequence
          Length = 76285

 Score = 37.0 bits (84), Expect = 0.071
 Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 29/113 (25%)
 Frame = +1

Query: 33   SNYRPFEPQALGLSPSWRLTGFSGMK--------------------GUGCKVPQEALLKL 72
            S+ R   PQ +  SP+WR+ G S  +                    G     P+  L ++
Sbjct: 5344 SSIRATIPQRINRSPNWRVYGASAARVGRVCALGQVRAVGRVLLAAGQPAAAPERQLRRV 5523

Query: 73   LAGLTRPDVRPPL---------GRGLVGGQEEASQEAGLPAGAGPSPTFPALG 116
             A   RP   P +         GRG   G   A QE  + AGAGP      +G
Sbjct: 5524 AAVQRRPQRLPRVSRAAQRRRDGRGAAQGPAAAEQEEDIQAGAGPGSGLDGVG 5682


>gb|AAQY01001206.1| Phytophthora sojae strain P6497 Psojae_Cont1206, whole genome shotgun
            sequence
          Length = 23878

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 149  MMGRIACANVLSDLYAMGITEC 170
            M    ACAN+L+D+ AMG++EC
Sbjct: 2745 MCASSACANLLADVEAMGLSEC 2680


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:09 PM
  Number of letters in database: 78,051,097
  Number of sequences in database:  5578
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,062,367
Number of Sequences: 5578
Number of extensions: 572502
Number of successful extensions: 3084
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 162
Number of HSP's that attempted gapping in prelim test: 2224
Number of HSP's gapped (non-prelim): 1605
length of query: 448
length of database: 26,017,032
effective HSP length: 110
effective length of query: 338
effective length of database: 25,403,452
effective search space: 8586366776
effective search space used: 8586366776
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)