TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Homo sapiens # Complete (448 letters) Database: genome.fa 218 sequences; 41,633,360 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_11 88 1e-17 scaffold_25 33 0.74 scaffold_2 32 1.7 scaffold_7 31 2.8 scaffold_20 29 8.2 >scaffold_11 Length = 1136692 Score = 88.2 bits (217), Expect = 1e-17 Identities = 92/325 (28%), Positives = 120/325 (36%), Gaps = 132/325 (40%) Frame = -2 Query: 218 NPWIIIGGVATVVCQPNEFIM--------------------------------------P 239 NPW+I+GGVA+ VC+P ++IM P Sbjct: 112134 NPWMIVGGVASSVCKPQDYIMLVMYGPRFFDEPCPPFAHHMVHFSFLPLL*CLRPFFTRP 111955 Query: 240 DSAVVGDVLVLTKPLGTQVAVNAHQWLDNPE-------RWNK------------------ 274 GDVLVLTKPLGTQ AVNAHQWL P N+ Sbjct: 111954 TGGQAGDVLVLTKPLGTQPAVNAHQWLGTPGFDR*VGLPLNRLHCLL*SLFEQK*FMVML 111775 Query: 275 ---VKMVVSREEVELAYQEAMFNMATLNRTAAG----LMHTFNAHAATDITGFGI----- 322 +K V++ E+V+ Y AM +MA LNR AAG L+ N H A + F + Sbjct: 111774 PV*IKDVMTPEQVKRTYDMAMASMAKLNRRAAGKASPLLLLSNQHGAHALALFRL*IFLC 111595 Query: 323 -----------------LGHSQNLAKQQRN------------------------------ 335 HS+ AK R Sbjct: 111594 SRSNAQVRRAWRHRCDWFRHSRPCAKPSRGPNGRGRLGP*HVAQYDHASGLRCISLFLLL 111415 Query: 336 -EVSFVIHNL---------PIIAKMAAVSKASGRFGLLQGTSAETSGGLLICLPREQAAR 385 + V H L ++ M AV++ F LL+G SAETSGGLL+ LP QAA Sbjct: 111414 PSFAVVEHGLFKCKPCCSCSVLPGMRAVNE-KFNFKLLEGFSAETSGGLLVMLPAHQAAA 111238 Query: 386 FCSEIKSSKYGEGHQAWIVGIVEKG 410 F E++ + W +G V G Sbjct: 111237 FMRELQDI---DNFPCWQIGRVVAG 111172 Score = 73.9 bits (180), Expect(2) = 2e-16 Identities = 32/43 (74%), Positives = 37/43 (86%) Frame = -3 Query: 130 GLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDN 172 G ++QTTDFFYPLV+DPY+ GRIA ANVLSDLYAMG+ CDN Sbjct: 112619 GSRIMQTTDFFYPLVDDPYVQGRIAAANVLSDLYAMGVEHCDN 112491 Score = 32.3 bits (72), Expect = 0.97 Identities = 16/34 (47%), Positives = 21/34 (61%) Frame = -3 Query: 37 PFEPQALGLSPSWRLTGFSGMKGUGCKVPQEALL 70 PF P+A GL +RLT ++ +KG G P ALL Sbjct: 113171 PFNPEAHGLESGFRLTDYAKLKG*GWFDPVSALL 113070 Score = 30.4 bits (67), Expect(2) = 2e-16 Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 15/107 (14%) Frame = -1 Query: 44 GLSPSWRLTGFSGMKGUGCKVPQEALLKLLAGLTRPDVRPP-------------LGRGLV 90 G S RLT KVPQ LL LL G+ P + P GL Sbjct: 113044 GCSGVTRLTSSLAPACRFSKVPQAELLILLEGVCAPLISLPHTLRSACFCFLPCCTPGLC 112865 Query: 91 GGQEE-ASQEAGLP-AGAGPSPTFPALGIGMDSCVIPLRHGGLSLVQ 135 + A ++ L +G + +GIG+DSCV+ R+ + LVQ Sbjct: 112864 ADKMPLADRDVELKQSGEDETDAESLVGIGLDSCVLKTRYPDMHLVQ 112724 >scaffold_25 Length = 667690 Score = 32.7 bits (73), Expect = 0.74 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = +2 Query: 353 VSKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEKG 410 + +S G++ GT G L++ LP +++ FCS+ K + +G G+VE G Sbjct: 190172 ILSSSQGLGVVVGTVVV--GALVLLLPPHESSSFCSQTKKRRLEQGASFQAAGVVEAG 190339 >scaffold_2 Length = 3607471 Score = 31.6 bits (70), Expect = 1.7 Identities = 15/37 (40%), Positives = 17/37 (45%) Frame = +2 Query: 86 GRGLVGGQEEASQEAGLPAGAGPSPTFPALGIGMDSC 122 G GL GQE Q G +G G P A +G D C Sbjct: 1940666 GAGLTKGQEAQMQSVGRGSGQGDPPLAVAAAVGTDHC 1940776 >scaffold_7 Length = 1435906 Score = 30.8 bits (68), Expect = 2.8 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +2 Query: 41 QALGLSPSWRLTGFSGMKGUGCKVPQEALLKLLAGLTR 78 +ALG +WR+TG GM+G ++ ++ LA LTR Sbjct: 306863 EALGTIRNWRITGEPGMRGVQTVRKRKRAIRGLAALTR 306976 >scaffold_20 Length = 720398 Score = 29.3 bits (64), Expect = 8.2 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Frame = +1 Query: 360 FGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKY---GEGHQAWIVGIVEKGNRTARI 416 F L G+S S L C +A R C ++ S + G H +W+ ++KG+ T R+ Sbjct: 204124 FFFLSGSSLGGSLEHLCCSASPEAFRNCMHLRVSGHAPQGVNHGSWVQL*IDKGSHTRRL 204303 Database: genome.fa Posted date: Jan 19, 2010 5:06 PM Number of letters in database: 41,633,360 Number of sequences in database: 218 Lambda K H 0.320 0.136 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,469,662 Number of Sequences: 218 Number of extensions: 360185 Number of successful extensions: 1779 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 1431 Number of HSP's gapped (non-prelim): 705 length of query: 448 length of database: 13,877,786 effective HSP length: 105 effective length of query: 343 effective length of database: 13,854,896 effective search space: 4752229328 effective search space used: 4752229328 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 63 (28.9 bits)