TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Homo sapiens # Complete
         (448 letters)

Database: genome.fa 
           1696 sequences; 31,706,682 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

1036_mexFOS1_20a19.q1kpIBR                                            225   6e-59
mex500j09.q1k                                                          32   0.73 
mex204m05.q1k                                                          32   0.73 
mex308d23.q1k                                                          32   0.96 
mex233b09.p1k                                                          30   3.6  
mex424o21.q1k                                                          29   6.2  

>1036_mexFOS1_20a19.q1kpIBR 
          Length = 7481

 Score =  225 bits (573), Expect = 6e-59
 Identities = 148/396 (37%), Positives = 199/396 (50%), Gaps = 15/396 (3%)
 Frame = +3

Query: 38   FEPQALGLSPSWRLTGFSGMKGUGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEEAS 97
            F+P +LGL   ++LT ++ +KG  CK+PQ  LL LL  L+              GQ++  
Sbjct: 4962 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQELSTTP-----------GQKD-- 5102

Query: 98   QEAGLPAGAGPSPTFPALGIGMDSCVIPLRHGG-----LSLVQTTDFFYPLVEDPYMMGR 152
                               +G+D  ++PL H       L LV TTDFF+P V DP++ G+
Sbjct: 5103 -------------------VGVDCSIVPLHHTNSKGEALFLVSTTDFFFPSVSDPFLQGQ 5225

Query: 153  IACANVLSDLYAMGITECDNXXXXXXXXXXXXXXXREKVTPLMVKGFRDXXXXXXXXXXX 212
            I  ANVLSDLY+MGI +CD                R   T  ++KGF +           
Sbjct: 5226 IGAANVLSDLYSMGIPDCDTMLMLLAASTEMDEHERLITTREIMKGFAERARLATTTVTG 5405

Query: 213  XXXXXNPWIIIGGVATVVCQPNEFIMPDSAV-VGDVLVLTKPLGTQVAVNAHQWLDNPER 271
                 NPW +IGGVA  V    E + P   +  GD+LVLTKPLG QVAVN  QWL  P  
Sbjct: 5406 GQTVMNPWPLIGGVAMAVVSEAEMVRPTGLLRAGDILVLTKPLGCQVAVNLKQWLLRPSP 5585

Query: 272  WNKVKMV--VSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNL 329
              +  +   +S EE+E  Y  A  +M  LNR  A LM    AH ATD+TGFGILGH+ N 
Sbjct: 5586 LYEETIAGHISPEEIEELYNMATDSMRRLNREGARLMRKHGAHGATDVTGFGILGHANNF 5765

Query: 330  AKQQR-----NEVSFVIHNLPIIAKMAAVSK-ASGRFGLLQGTSAETSGGLLICLPREQA 383
               Q        +  V+  LP+     A SK  + ++ LL+G SAETSGGLL+  P   +
Sbjct: 5766 GAAQTVGDAPRSLCLVLERLPMFKTAVAASKRMNDKYRLLEGYSAETSGGLLVAFPSTTS 5945

Query: 384  AR-FCSEIKSSKYGEGHQAWIVGIVEKGNRTARIID 418
            A  FC+E+  ++   G  +WIVG VE  +R A  +D
Sbjct: 5946 AEAFCAEL--TEIDGGCPSWIVGYVE--DRAANALD 6041


>mex500j09.q1k 
          Length = 41885

 Score = 32.3 bits (72), Expect = 0.73
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +1

Query: 87    RGLVGG----QEEASQEAGLPAGAGPSPTFPALGIGMDSCVIPLRHGGL 131
             RG+V G     EEAS   G+P G G +   P LG     C  P+R GGL
Sbjct: 22078 RGVVSGCSRNTEEASVFTGVPCGRGAAAQGPPLGCHRGKC--PVRCGGL 22218


>mex204m05.q1k 
          Length = 5466

 Score = 32.3 bits (72), Expect = 0.73
 Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 2/120 (1%)
 Frame = -1

Query: 40   PQALGLSPSWRLTGFSGMKGUGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEEASQE 99
            P  +   P W  TG +G     C++P  A+ +   GL RP  +           E  +  
Sbjct: 4737 PHCMASPPVWSATGSTGTWTSCCRIP--AIPRHTEGLGRPAAQQRRSCRWRSVAERPAPH 4564

Query: 100  AGLPAGAGPSPTFPALGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM--GRIACAN 157
             G P    P    P    G  S V   R G + LV   +        P  M   R+ CA+
Sbjct: 4563 RGPP----PERRLPRCRTGTTSAVASARSGAIPLVAAAELVEEA*RTPQAMQPPRLRCAS 4396


>mex308d23.q1k 
          Length = 17553

 Score = 32.0 bits (71), Expect = 0.96
 Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
 Frame = +2

Query: 31    SFSNYRPFEPQALGLSPSWRLTGFSGMK------GUGCKVPQEALLKLLAGLTRPDVRPP 84
             S    RP E ++    PSW L  F+G +        GC  P +   + L G T  +V P 
Sbjct: 15413 SLCTSRPGEVRSSTPRPSWTLPAFAGSRTSIETCSSGCGNPND---RTLIGTTHSEVMPQ 15583

Query: 85    LGRGLVGGQEEASQEAGLPAGAGP 108
                   GG+   S  A   A A P
Sbjct: 15584 AS----GGEGAPSSSANTAAAAAP 15643


>mex233b09.p1k 
          Length = 111456

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
 Frame = -3

Query: 380   REQAARFCSEIKSSKYGEGHQA--WI-----VGIVEKG-NRTARIIDKPRVIEVLP-RGA 430
             R  A RFC  +++S YG G +   W+     V + EK   RTA+I  +  ++E  P RG 
Sbjct: 65080 RSIALRFCRLVRASVYGHGERGR*WLPQEV*VALSEKSRERTAKIFREAGLVEREPTRGG 64901

Query: 431   TAAVLA 436
               A+ A
Sbjct: 64900 WGAIPA 64883


>mex424o21.q1k 
          Length = 101186

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = -2

Query: 328   NLAKQQRNEVSFVIHNLPIIAKMAAVSKASGRFGLLQGTSAETSGGLLICLPREQAAR 385
             +L K+ R E + V    P+   +A  ++ASG   LL+ +    +G   +CLPR  A++
Sbjct: 41311 SLRKKPRGETTPVARR*PLFG-VARTARASGLRVLLELSCGTATGHFPLCLPRSPASQ 41141


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 31,706,682
  Number of sequences in database:  1696
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,429,045
Number of Sequences: 1696
Number of extensions: 286628
Number of successful extensions: 1725
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 1420
Number of HSP's gapped (non-prelim): 611
length of query: 448
length of database: 10,568,894
effective HSP length: 103
effective length of query: 345
effective length of database: 10,394,206
effective search space: 3586001070
effective search space used: 3586001070
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)