TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000048_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Drosophila melanogaster # Complete
         (370 letters)

Database: genome.fa 
           9 sequences; 8,347,606 total letters

Searching.........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 ch...    31   0.46 

>gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 chr1_complete, whole genome
               shotgun sequence
          Length = 2540030

 Score = 30.8 bits (68), Expect = 0.46
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 31/173 (17%)
 Frame = +3

Query: 208     LNQTEKYKKLLSECSDAD--IKETFEIAVKSMTYLNKNAA---LLMHKYQAHCAT----- 257
               L +  +Y   L+ C      IK     AV  + Y+ KN A    L  KYQ          
Sbjct: 1789443 LGEDHQYSFPLASCVKCSCLIKIVVNHAVAGL-YIGKNGAHLKRLQSKYQFKLTQSGRGA 1789619

Query: 258     --DITGFGLLGHANNLAQFQKEKVLFQINKLPIIKNVLKFSTLV--------GQSTKFRS 307
                 D TG G   H  N        +LFQ N + I+  +     ++         +S +F S
Sbjct: 1789620 KGDFTGVGYPCHRTNTT------LLFQGNLVDILHGLRPLYKIIQSDILALDDKSLEFLS 1789781

Query: 308     GRSVETSGGLLICLPADA-------ADKFCRDFEEATNGE----QKSFQIGHV 349
               GR+V+    L + +PAD          + C     A+  E    +++F++G++
Sbjct: 1789782 GRTVKVKFELNLVVPADRKRILLQDTGRRCMQLRNASGVEIIAGKQNFEVGNI 1789940


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:27 PM
  Number of letters in database: 8,347,606
  Number of sequences in database:  9
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,002,931
Number of Sequences: 9
Number of extensions: 40824
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 10
length of query: 370
length of database: 2,782,535
effective HSP length: 92
effective length of query: 278
effective length of database: 2,781,707
effective search space: 773314546
effective search space used: 773314546
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)