TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000048_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Drosophila melanogaster # Complete (370 letters) Database: genome.fa 218 sequences; 41,633,360 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_11 60 2e-17 scaffold_55 30 2.9 scaffold_5 30 3.7 scaffold_2 30 3.7 scaffold_13 30 4.9 scaffold_10 29 6.4 >scaffold_11 Length = 1136692 Score = 59.7 bits (143), Expect(2) = 4e-11 Identities = 27/45 (60%), Positives = 36/45 (80%) Frame = -3 Query: 71 LIQTVDFFYPMVNDPELLGRIALANVLSDVYAVGVTQFDTVEMIV 115 ++QT DFFYP+V+DP + GRIA ANVLSD+YA+GV D V M++ Sbjct: 112610 IMQTTDFFYPLVDDPYVQGRIAAANVLSDLYAMGVEHCDNVLMLL 112476 Score = 55.8 bits (133), Expect(2) = 2e-17 Identities = 47/172 (27%), Positives = 69/172 (40%), Gaps = 72/172 (41%) Frame = -2 Query: 155 QLKINPWCIIGGIATSVCRSEEIIL----------------------------------- 179 Q +NPW I+GG+A+SVC+ ++ I+ Sbjct: 112146 QTVLNPWMIVGGVASSVCKPQDYIMLVMYGPRFFDEPCPPFAHHMVHFSFLPLL*CLRPF 111967 Query: 180 ---PSNAQPGDVLVLTKPLGGQMAMDAHLW------------QLNQTEKYKKLLSE---- 220 P+ Q GDVLVLTKPLG Q A++AH W LN+ L E Sbjct: 111966 FTRPTGGQAGDVLVLTKPLGTQPAVNAHQWLGTPGFDR*VGLPLNRLHCLL*SLFEQK*F 111787 Query: 221 -----------CSDADIKETFEIAVKSMTYLNKNAA-------LLMHKYQAH 254 + +K T+++A+ SM LN+ AA LL +++ AH Sbjct: 111786 MVMLPV*IKDVMTPEQVKRTYDMAMASMAKLNRRAAGKASPLLLLSNQHGAH 111631 Score = 51.6 bits (122), Expect(2) = 2e-17 Identities = 24/41 (58%), Positives = 30/41 (73%) Frame = -3 Query: 247 LMHKYQAHCATDITGFGLLGHANNLAQFQKEKVLFQINKLP 287 LM KY AH ATD+TGFG+LGHA NLA+ Q +V ++ LP Sbjct: 111587 LMRKYGAHGATDVTGFGILGHAQNLAEAQTAEVDLVLDMLP 111465 Score = 37.7 bits (86), Expect = 0.018 Identities = 22/48 (45%), Positives = 27/48 (56%) Frame = -2 Query: 304 KFRSGRSVETSGGLLICLPADAADKFCRDFEEATNGEQKSFQIGHVTA 351 K G S ETSGGLL+ LPA A F R+ ++ N +QIG V A Sbjct: 111312 KLLEGFSAETSGGLLVMLPAHQAAAFMRELQDIDN--FPCWQIGRVVA 111175 Score = 26.6 bits (57), Expect(2) = 4e-11 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = -1 Query: 113 MIVSTSTSFSEKERDVVIGLVMKGFQNSL 141 ++ + S + S K+R VV LVM+GF+ +L Sbjct: 112369 VLPALSLNMSAKQRQVVTPLVMQGFRGAL 112283 >scaffold_55 Length = 103299 Score = 30.4 bits (67), Expect = 2.9 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 16/109 (14%) Frame = -3 Query: 268 ANNLAQFQKEKVLFQINKLPIIKNVLKFSTL-------VGQSTKFRSGRSVET------- 313 A+++++F + V QIN+ P++ + + STK +SG+S ++ Sbjct: 41104 ASDISRFSEGCVTMQINEQPLLYELGRVLAAHCACFPAETASTKAQSGQSGQSGQNGQSG 40925 Query: 314 -SGGLLICLPADAADKFCRDFEEATNGEQKSFQIGHVTAAN-ESDAVLC 360 SG L+C PA R+ T + +S GH N S A LC Sbjct: 40924 QSGRGLVCQPAQHGVSMHRELLNITKDDLRSLVGGHCPDMNAASSAGLC 40778 >scaffold_5 Length = 1613056 Score = 30.0 bits (66), Expect = 3.7 Identities = 27/119 (22%), Positives = 53/119 (44%) Frame = +3 Query: 81 MVNDPELLGRIALANVLSDVYAVGVTQFDTVEMIVSTSTSFSEKERDVVIGLVMKGFQNS 140 M + P+ L I+L+N LS + ++ ++ ++++ +S S FS S Sbjct: 17436 MCSLPQTLSEISLSNSLSQILSLKISLKISLKISLSNSLKFS--------------LSKS 17573 Query: 141 LKANGYRNTPLIIRQLKINPWCIIGGIATSVCRSEEIILPSNAQPGDVLVLTKPLGGQM 199 L N L ++P+ + SVCRSE+++ +N++ L L + G + Sbjct: 17574 LSQN-----------LSLSPFLLF---FFSVCRSEKVMQAANSESAIKLGLVRTCAGPL 17708 >scaffold_2 Length = 3607471 Score = 30.0 bits (66), Expect = 3.7 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 9/77 (11%) Frame = -2 Query: 118 STSFSEKERDVVIGLVMKGFQNSLKANGYRNTPLIIRQLK---------INPWCIIGGIA 168 ST F + R V +V+K +LK+NG N L +R ++P C++G + Sbjct: 1953411 STFFICRPRPFVSTMVLK--HATLKSNGAHNRKLSVRHFAFLHASVVVLVSPSCLLGPVQ 1953238 Query: 169 TSVCRSEEIILPSNAQP 185 S+C + L P Sbjct: 1953237 CSICEPIHLGLYPRCHP 1953187 >scaffold_13 Length = 1102880 Score = 29.6 bits (65), Expect = 4.9 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 6/86 (6%) Frame = -1 Query: 246 LLMHKYQ------AHCATDITGFGLLGHANNLAQFQKEKVLFQINKLPIIKNVLKFSTLV 299 LLMH AHCA + + G N Q + Q+NKLP + ++L+ LV Sbjct: 74474 LLMHSEHHLEWPPAHCANSLCYYNT-GDVN-----QAQATAEQLNKLPQLADILESGHLV 74313 Query: 300 GQSTKFRSGRSVETSGGLLICLPADA 325 Q SG +L+ +PA A Sbjct: 74312 PQFVN-------TNSGPMLVLMPATA 74256 >scaffold_10 Length = 1258938 Score = 29.3 bits (64), Expect = 6.4 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +3 Query: 246 LLMHKYQAHCATDITGFGLLGHANNLAQFQK 276 LL ++QAHCA ++ GH +NL + QK Sbjct: 1017621 LLDLEWQAHCAQPMSSQSRQGHGSNLVKLQK 1017713 Database: genome.fa Posted date: Jan 19, 2010 5:06 PM Number of letters in database: 41,633,360 Number of sequences in database: 218 Lambda K H 0.319 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,339,041 Number of Sequences: 218 Number of extensions: 224796 Number of successful extensions: 902 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 817 Number of HSP's gapped (non-prelim): 246 length of query: 370 length of database: 13,877,786 effective HSP length: 104 effective length of query: 266 effective length of database: 13,855,114 effective search space: 3685460324 effective search space used: 3685460324 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 62 (28.5 bits)