TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000056_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Anopheles gambiae # Complete (369 letters) Database: genome.fa 218 sequences; 41,633,360 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_11 66 3e-23 scaffold_15 31 2.2 scaffold_49 30 3.7 scaffold_12 30 3.7 scaffold_5 30 4.9 scaffold_9 29 6.4 >scaffold_11 Length = 1136692 Score = 65.9 bits (159), Expect(2) = 3e-23 Identities = 30/41 (73%), Positives = 34/41 (82%) Frame = -3 Query: 250 LMKKYGAHAATDVTGFGLYGHAENLASHQTADVDFHLDTLP 290 LM+KYGAH ATDVTGFG+ GHA+NLA QTA+VD LD LP Sbjct: 111587 LMRKYGAHGATDVTGFGILGHAQNLAEAQTAEVDLVLDMLP 111465 Score = 61.2 bits (147), Expect(2) = 3e-23 Identities = 50/195 (25%), Positives = 73/195 (37%), Gaps = 71/195 (36%) Frame = -2 Query: 135 VPMVMQGFLEAAKACNAPVQIGSIAENPWCVIGGAASAVCHRSELIM------------- 181 +P+ + +A + V G NPW ++GG AS+VC + IM Sbjct: 112212 LPLDLLNTPDACRDAGTRVSGGQTVLNPWMIVGGVASSVCKPQDYIMLVMYGPRFFDEPC 112033 Query: 182 -------------------------PYNAQPGDALVLTKPLGTQLATNAYIWMGEQQSDS 216 P Q GD LVLTKPLGTQ A NA+ W+G D Sbjct: 112032 PPFAHHMVHFSFLPLL*CLRPFFTRPTGGQAGDVLVLTKPLGTQPAVNAHQWLGTPGFDR 111853 Query: 217 WAQL--------------------------RERFTVADIEQTYRIALESMSRLNKTGAE- 249 L ++ T +++TY +A+ SM++LN+ A Sbjct: 111852 *VGLPLNRLHCLL*SLFEQK*FMVMLPV*IKDVMTPEQVKRTYDMAMASMAKLNRRAAGK 111673 Query: 250 ------LMKKYGAHA 258 L ++GAHA Sbjct: 111672 ASPLLLLSNQHGAHA 111628 Score = 58.9 bits (141), Expect = 8e-09 Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 7/96 (7%) Frame = -3 Query: 72 HDLFLVQSVDFFYPLIDDPFMLGKIALANVVSDVFAVGATEIDQIKLI-------VTAPT 124 H ++Q+ DFFYPL+DDP++ G+IA ANV+SD++A+G D + ++ + Sbjct: 112622 HGSRIMQTTDFFYPLVDDPYVQGRIAAANVLSDLYAMGVEHCDNVLMLLGIHSASIPCSR 112443 Query: 125 EFTEQEREVVVPMVMQGFLEAAKACNAPVQIGSIAE 160 +F + +V+ F C++ V++ + E Sbjct: 112442 QFERMAHTPCLMLVLCCFALRLPPCSSSVELEHVGE 112335 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/47 (44%), Positives = 25/47 (53%) Frame = -2 Query: 307 KLLAGKAVETSGGLLICLPREAAAGFCEEYRRCTKHEAWIVGHVEKG 353 KLL G + ETSGGLL+ LP AA F E + W +G V G Sbjct: 111312 KLLEGFSAETSGGLLVMLPAHQAAAFMRELQDIDNFPCWQIGRVVAG 111172 Score = 29.6 bits (65), Expect = 4.9 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -3 Query: 2 FKPESYGLSHDFRLTKFSTLRGUG 25 F PE++GL FRLT ++ L+G G Sbjct: 113168 FNPEAHGLESGFRLTDYAKLKG*G 113097 >scaffold_15 Length = 1049915 Score = 30.8 bits (68), Expect = 2.2 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +3 Query: 158 IAENPWCVIGGAASAVCHRSELIMPYNAQPG 188 +A+ PWC A+CH+ + MP+ A G Sbjct: 160896 LAKTPWCFGSATGPALCHKKHVPMPWCAGEG 160988 >scaffold_49 Length = 198086 Score = 30.0 bits (66), Expect = 3.7 Identities = 22/99 (22%), Positives = 39/99 (39%) Frame = +2 Query: 120 VTAPTEFTEQEREVVVPMVMQGFLEAAKACNAPVQIGSIAENPWCVIGGAASAVCHRSEL 179 +T T F ER V GF + + P+ +G ++ P+C + + + CH E Sbjct: 45380 ITTTTRFASGERSVT------GF-QLLEYSKLPMLLGLLSTRPYCALPSSPNIACHSCES 45538 Query: 180 IMPYNAQPGDALVLTKPLGTQLATNAYIWMGEQQSDSWA 218 + D LV T+ +A + G + W+ Sbjct: 45539 TRCNSRD--DTLVCTRSFARPCLQSAELECGLGCQERWS 45649 >scaffold_12 Length = 1128436 Score = 30.0 bits (66), Expect = 3.7 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = -2 Query: 140 QGFLEAAKACNA---PVQIGSIAENPWCVIGGAASAVCHRSELIMPYNAQPGDALVLTKP 196 +G+L A +C+ P Q+G I +P V G ++ R PY PG AL T P Sbjct: 21906 RGYLRFASSCSTIGDPYQLGPIIRSPVTVKHGLGVSMLERLMSQAPYARLPG-ALTGTSP 21730 Query: 197 L 197 L Sbjct: 21729 L 21727 >scaffold_5 Length = 1613056 Score = 29.6 bits (65), Expect = 4.9 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +1 Query: 324 LPREAAAGFCEEYRRCTKHEAWIVGHVEKGARGVKMNPNLNI 365 +PR G E R+C ++ +W G ++ GARG + N+ + Sbjct: 618409 VPRRETRG--EHKRQCARYPSWAGGQLDLGARGDPLVQNMKL 618528 >scaffold_9 Length = 1303534 Score = 29.3 bits (64), Expect = 6.4 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +3 Query: 173 VCHRSELIMPYNAQPGDALVLTKPL 197 +CHR +++P +AQP A L KPL Sbjct: 823329 ICHRCLILVPRSAQPRYAKALDKPL 823403 Database: genome.fa Posted date: Jan 19, 2010 5:06 PM Number of letters in database: 41,633,360 Number of sequences in database: 218 Lambda K H 0.319 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,042,001 Number of Sequences: 218 Number of extensions: 277612 Number of successful extensions: 1458 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 1267 Number of HSP's gapped (non-prelim): 601 length of query: 369 length of database: 13,877,786 effective HSP length: 103 effective length of query: 266 effective length of database: 13,855,332 effective search space: 3685518312 effective search space used: 3685518312 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 62 (28.5 bits)