TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000106_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Mus musculus # Complete
         (858 letters)

Database: genome.fa 
           9 sequences; 8,347,606 total letters

Searching.........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ct...    30   1.6  
gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ct...    29   3.6  
gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ct...    29   3.6  

>gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ctg_531, whole genome shotgun
              sequence
          Length = 570487

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +3

Query: 560    VASDDSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGESEEPAGTEFQRDPEACQ- 618
              V  D+    E    NQ P    P  P+ T E+  STP +   SE+P  +E    PE  + 
Sbjct: 406566 VPGDELNLPEPEQQNQVPESAAPE-PDLTPETTESTPTL---SEQPKESELTSPPETSEQ 406733

Query: 619    --PAPDSA 624
                P P+++
Sbjct: 406734 HVPTPETS 406757


>gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ctg_530, whole genome shotgun
              sequence
          Length = 1317241

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 241    PPRWGPLGPAASNMPLLGDVGKP 263
              PPRW    P AS +P+LG +  P
Sbjct: 179837 PPRWDSFCPRASYLPILGTLSPP 179769


>gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ctg_529, whole genome shotgun
               sequence
          Length = 1835834

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 727     NIPFVFALNRKALGRSLNKAVPVSIVGIFSYDGA 760
               N+P++F  ++ ALGR+   + PV    I S DG+
Sbjct: 1750393 NVPYIFVHSKVALGRACGVSRPVISCAITSRDGS 1750292


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:27 PM
  Number of letters in database: 8,347,606
  Number of sequences in database:  9
  
Lambda     K      H
   0.311    0.126    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,837,244
Number of Sequences: 9
Number of extensions: 71009
Number of successful extensions: 301
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 178
length of query: 858
length of database: 2,782,535
effective HSP length: 100
effective length of query: 758
effective length of database: 2,781,635
effective search space: 2108479330
effective search space used: 2108479330
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)