TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000106_1.0 # Protein # SECIS binding protein 2 (SBP2) # Mus musculus # Complete (858 letters) Database: genome.fa 218 sequences; 41,633,360 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_38 42 1e-07 scaffold_2 42 0.003 scaffold_17 41 0.005 scaffold_5 35 0.33 scaffold_22 33 0.95 scaffold_16 33 1.2 scaffold_14 33 1.2 scaffold_46 33 1.6 scaffold_18 33 1.6 scaffold_40 32 2.1 scaffold_25 32 2.1 scaffold_3 32 2.1 scaffold_32 32 3.6 scaffold_11 31 4.7 scaffold_26 30 8.0 scaffold_20 30 8.0 >scaffold_38 Length = 375890 Score = 41.6 bits (96), Expect(2) = 1e-07 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 28/93 (30%) Frame = -2 Query: 670 VKAKTKRRLVLGLREVLKHLKLRKLKCIIISPNCEKTQ---------------------- 707 ++AK +RRLVLG E + L L K+K ++++P+ ++T Sbjct: 123049 MQAKARRRLVLGANECHRKLALGKVKLLLVAPDQQRTNVPGLFVRAVHACRVVVQLSFII 122870 Query: 708 ------SKGGLDDTLHTIIDCACEQNIPFVFAL 734 G LDD LH I+ A E P F L Sbjct: 122869 FSFRA*LAGALDDNLHQILQIASETGTPVFFTL 122771 Score = 33.9 bits (76), Expect(2) = 1e-07 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -1 Query: 637 YCSQMLSKEVDACVTGLLKELVRFQDRMYQKDPV 670 YC L EVD V LLK+ +RF +R +K+P+ Sbjct: 123242 YCDHALDPEVDETVKQLLKDSMRFYNRAVEKNPM 123141 >scaffold_2 Length = 3607471 Score = 42.0 bits (97), Expect = 0.003 Identities = 27/91 (29%), Positives = 44/91 (48%) Frame = +3 Query: 259 DVGKPVADMVEGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAAT 318 DVG+ +A E S + + +S +TTSS S T S T T SS S ++T Sbjct: 1781640 DVGRSIACSREIVSTSSTSSTSSTSSTSTTSSTSSTSSTSSTSSTSSTSSTSSSSSTSST 1781819 Query: 319 ENVTSMINLKKTTSSADAKNVSVTSEALSSN 349 + +S + T+S++ + S TS S++ Sbjct: 1781820 SSTSSTSSTSSTSSTSTTSSTSSTSSTSSTS 1781912 Score = 35.4 bits (80), Expect = 0.25 Identities = 25/87 (28%), Positives = 41/87 (47%) Frame = +2 Query: 275 SDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSA 334 S + + +S +TTSS S T S T + SS S+ +T + TS + +TSS Sbjct: 1782956 STSSTSSTSSTSTTSSTSSTSSTSSTSS----TSSTSSTSSTSTTSSTSSTSSTSSTSST 1783123 Query: 335 DAKNVSVTSEALSSNPSYNREKRVYPA 361 + + + TS S P + + +PA Sbjct: 1783124 SSTSTTSTSLLTRSGPVFCNDPASHPA 1783204 Score = 30.8 bits (68), Expect = 6.1 Identities = 47/171 (27%), Positives = 70/171 (40%), Gaps = 9/171 (5%) Frame = -1 Query: 468 ASHAKPSSRPVVFSVGAVPVLSKDASSSERGRRSSQMKTPHNPLDSSAPLMKKGKQREIP 527 A+H PS R + V PV S +RS+ H P DS A + R P Sbjct: 266047 ATHGGPSVRVSPY-VDPTPV-----PQSATSQRSNPFD--HAPSDSQAETEQPA--RVSP 265898 Query: 528 KAKKPTSLKKIILKXXXXXXXXXXXXSAVSLTVASD--DSQDVESGASNQ-TPSQDNPTG 584 A PT++ +AV+ + +D D D ES A ++ TP T Sbjct: 265897 TAVPPTAVPP----------------TAVAPMIRTDILDMSDSESRAQSELTPKALPKTE 265766 Query: 585 PEKTEESVSSTPVVEGESEEPAGTEFQRDPEACQPAP------DSATFPKI 629 KTE S ++ P E + E ++ + +PE +P P +S T PK+ Sbjct: 265765 GSKTEGSKTAGPKTEPQPESKPESKPELNPEP-KPEPKVEAKAESRTLPKV 265616 >scaffold_17 Length = 911885 Score = 41.2 bits (95), Expect = 0.005 Identities = 29/94 (30%), Positives = 47/94 (50%) Frame = +3 Query: 275 SDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSA 334 S + + TS+++TSS S T S T T SS S ++T + +S + T+S++ Sbjct: 445398 STSSTSSTTSSSSTSSTSSTSSTSSTSSTSSTSFTSSSSSTSSTSSTSSTTSSSSTSSTS 445577 Query: 335 DAKNVSVTSEALSSNPSYNREKRVYPAPKAKASQ 368 + S TS SS S + + P+P A A+Q Sbjct: 445578 STSSTSSTSST-SSTSSTSSTSIMTPSPSAIAAQ 445676 Score = 31.6 bits (70), Expect = 3.6 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 15/85 (17%) Frame = +1 Query: 563 DDSQDVESGASNQTPSQDNPTGPEK---------------TEESVSSTPVVEGESEEPAG 607 DD + ++G N+T + P P + TE V+S P E+P Sbjct: 9133 DDDDEADNGGENETAATAGPANPGEAALTATLQSASAGTDTEARVASPPHSNEGLEQPPS 9312 Query: 608 TEFQRDPEACQPAPDSATFPKIHSR 632 E +PAP T P +H+R Sbjct: 9313 LAAT---EGVEPAPVRHTHPPLHAR 9378 >scaffold_5 Length = 1613056 Score = 35.0 bits (79), Expect = 0.33 Identities = 58/334 (17%), Positives = 100/334 (29%) Frame = -3 Query: 275 SDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSA 334 S + + TS ++TSS S T S T T S+ S ++T + TS + T+SS+ Sbjct: 502883 STSSTSSTTSTSSTSSTSSTTSTSST------SSTSSTSSTSSTSSTTSTSSTSSTSSSS 502722 Query: 335 DAKNVSVTSEALSSNPSYNREKRVYPAPKAKASQGGELEQXXXXXXXXXXXXXXXPSYEV 394 + S TS S + + + + + S S Sbjct: 502721 STSSTSSTSSTSSMSSTTSTSSTSSTSSTSSTSSTSSTTSTSSTSSTSSSSSTSSTSSTS 502542 Query: 395 LTVQEPPRIEDAEEFPNLSVASERRHRGQSPKLHSKQQTQNEFKTSGKKSQVPVQLDLGG 454 T + S S + S T + TS S Sbjct: 502541 STSSTSSTTSTSSTSSTSSTTSSSSSTSSTSSTSSTSSTSSTTSTSSTSS---------- 502392 Query: 455 MLAALEKXXXXXHASHAKPSSRPVVFSVGAVPVLSKDASSSERGRRSSQMKTPHNPLDSS 514 + +S + SS S + +S +S+S SS T SS Sbjct: 502391 TSSTTSTSSTSSTSSTSSTSSTSSTTSTSSTSSMSSSSSTSSTSSTSSTSSTSSTTSTSS 502212 Query: 515 APLMKKGKQREIPKAKKPTSLKKIILKXXXXXXXXXXXXSAVSLTVASDDSQDVESGASN 574 + TS ++ ++ S T ++ + S +S Sbjct: 502211 TSSTSSTTSTSSTSSTSSTSTQE---------------PTSTSSTSSTSSTSSTSSTSST 502077 Query: 575 QTPSQDNPTGPEKTEESVSSTPVVEGESEEPAGT 608 T + + T + S++ +EEP T Sbjct: 502076 STEEPTSTSSTSSTSSTSSTSSTSSTSTEEPTST 501975 Score = 32.0 bits (71), Expect = 2.8 Identities = 21/64 (32%), Positives = 31/64 (48%) Frame = +2 Query: 557 SLTVASDDSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGESEEPAGTEFQRDPEA 616 SL A + + A TP+ N G +K E S ++TPVVE E+ PA + + Sbjct: 76538 SLASAVEMEASTANDAPATTPTPKNSPGKDK-ERSQAATPVVEPEAAPPAAEGPEGEHVT 76714 Query: 617 CQPA 620 +PA Sbjct: 76715 AEPA 76726 Score = 30.8 bits (68), Expect = 6.1 Identities = 70/384 (18%), Positives = 128/384 (33%), Gaps = 7/384 (1%) Frame = -1 Query: 249 PAASNMPLLGDVGKPVADMVEGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQ 308 PAA+ P + + + V + + ATT P+ TQE + T + + Sbjct: 1170886 PAAATEPAVAEEPAAAEEPVAAEEPAATEEPVVAEEPATTQEPATTQEPATTQEPAVAEE 1170707 Query: 309 TVSSDSAAA------TENVTSMINLKKTTSSADAKNVSVTSEALSSNPSYNREKRVYPAP 362 + + AA E ++ L T A A+ + E+ ++ + E+ Sbjct: 1170706 PAAVEELAAAAEPAVAEEPAAVEELATTQEPAVAEEPAAAEESATTEELASVEEPAVVEE 1170527 Query: 363 KAKASQGGELEQXXXXXXXXXXXXXXXPSYEVLTVQEPPRIEDAEEFPNLSVASERRHRG 422 A + +E+ E +EP +E+A A+E Sbjct: 1170526 AAATEEPAVVEEAAATEEPAVVE-------EAAATEEPAVVEEA-------AATEEPAVV 1170389 Query: 423 QSPKLHSKQQTQNEFKTSGKKSQVPVQLDLGGMLAALEKXXXXXHASHAKPSSRPVVFSV 482 + P + E + + + V A E A+ + ++ + SV Sbjct: 1170388 EEPTATEEPAVVEEAAATEEPAVVEEAAATEEPAAVEEPSATEEPAAVEEAAATEELASV 1170209 Query: 483 GAVPVLSKDASSSERGRRSSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKX 542 G P + ++ +++E ++ P P Q E ++ S+ + Sbjct: 1170208 GE-PAVVEEPTATEEPAVVEEVAATEEPAAVEEP---SAHQEESAATQEEPSVAAAAAEA 1170041 Query: 543 XXXXXXXXXXXSAVSLTVASDDSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGES 602 V A+++ VE + P+ D TEE + V Sbjct: 1170040 PATQEEPAATQEVVEEPTATEEPAVVEGLTVVEVPATDEAAA---TEEPSAHQEVSAATQ 1169870 Query: 603 EEPAGTEFQRDPEACQ-PAPDSAT 625 EEPA TE +P A Q A +SAT Sbjct: 1169869 EEPAATE---EPAATQGGAEESAT 1169807 >scaffold_22 Length = 692295 Score = 33.5 bits (75), Expect = 0.95 Identities = 30/119 (25%), Positives = 45/119 (37%) Frame = +3 Query: 196 HKRPDRKSRILAKSASTSKPEFEFSRLDFPELQSPKNSNMPETQKPPRWGPLGPAASNMP 255 HKRP K+ + +A++S L P +S +P + PP W P P + P Sbjct: 572865 HKRPSLKNTFVVATAASSAST----------LPPPPSSRVPTPRVPPSWPPPTPFS---P 573005 Query: 256 LLGDVGKPVADMVEGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDS 314 G P +M S T + +TS P S T + +T+ S S Sbjct: 573006 TPGAPPSPTTPRF--RMASSTPTAKPAPQSVSTSPPPTPPRTSGTTLIATPLKTIKSPS 573176 Score = 31.2 bits (69), Expect = 4.7 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 2/92 (2%) Frame = +1 Query: 278 TDGAVTSNATTSSP--SCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSAD 335 T+G+ T + T+++P S T S T TV++ + + + S TTS+A Sbjct: 355564 TEGSTTRSVTSTTPQASTTSATSSTTKDSTTHATVNASTTSTASSTVSSSTASSTTSTAS 355743 Query: 336 AKNVSVTSEALSSNPSYNREKRVYPAPKAKAS 367 + + ++ +++ + PAP S Sbjct: 355744 SAASTTSTSIVTTTTTQPTTLSTSPAPVMSTS 355839 >scaffold_16 Length = 929013 Score = 33.1 bits (74), Expect = 1.2 Identities = 21/63 (33%), Positives = 25/63 (39%) Frame = +3 Query: 115 SQARCHPGFRTAKPRHEHVCPPPQEAKGVFKKKPSDERRACEEQKSSSRRADNAVPCEAR 174 S RCHPG T P H C PP ++K ER E++ R E R Sbjct: 558213 SPTRCHPGSHTRTPHPNH-CTPPTPFNKERERKTGRER----EEEGRGRERGRGKNGEMR 558377 Query: 175 PAR 177 P R Sbjct: 558378 PPR 558386 >scaffold_14 Length = 1073601 Score = 33.1 bits (74), Expect = 1.2 Identities = 35/131 (26%), Positives = 47/131 (35%), Gaps = 6/131 (4%) Frame = -2 Query: 206 LAKSASTSKPEFEFSRLDFPELQSPK-NSNMPETQKPPRWGPLGPAASNMPL-----LGD 259 L K SKP F F+ P L+ P N+ + +PP W P P + P+ D Sbjct: 963446 LRKPTMISKPRFRFA----PPLRPPALRFNITQPDQPPSWAPAPPTSWPCPVHVLA*WVD 963279 Query: 260 VGKPVADMVEGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATE 319 V AD V VK +G T PS S Y V+ + Sbjct: 963278 VSGHNADRVGSNYVKEREKNGTKYFE-RTG*PSAVLSRSCNMREY*VKLASNIGMNVVNS 963102 Query: 320 NVTSMINLKKT 330 TS ++L T Sbjct: 963101 PTTSSLDLTHT 963069 >scaffold_46 Length = 248093 Score = 32.7 bits (73), Expect = 1.6 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Frame = -3 Query: 283 TSNATTSSPSCT--QELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVS 340 TS +TTSSPS T S TP + TV + +AA+T T+M T S++ V+ Sbjct: 221496 TSTSTTSSPSSTTLPLSSTTP----IETTVPATTAASTAASTTMTPTTATMSASPTMAVT 221329 Query: 341 VTSEALSS 348 TS A +S Sbjct: 221328 TTSGASTS 221305 >scaffold_18 Length = 855359 Score = 32.7 bits (73), Expect = 1.6 Identities = 25/91 (27%), Positives = 44/91 (48%) Frame = -2 Query: 671 KAKTKRRLVLGLREVLKHLKLRKLKCIIISPNCEKTQSKGGLDDTLHTIIDCACEQNIPF 730 +A ++L G E K L + II++ + E L+ LH + C ++N+P+ Sbjct: 584233 QASHYKQLKKGANEATKTLNRGISEFIIMAADTEP------LEILLHLPLLCE-DKNVPY 584075 Query: 731 VFALNRKALGRSLNKAVPVSIVGIFSYDGAQ 761 VF +++ALGR+ PV + D +Q Sbjct: 584074 VFVPSKQALGRACGVTRPVISASVTVNDSSQ 583982 >scaffold_40 Length = 342676 Score = 32.3 bits (72), Expect = 2.1 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Frame = +3 Query: 58 PPAAEQKMYPEDMAFGAPTFPAQYVSSEIALHPFAYPTYTLESAQSV-CSVPTLQYDYSQ 116 P A QK + M P P + E FA T A+SV C +S Sbjct: 90897 PDARPQKQFRSTMDTAPPALPPSWQKDENITLTFASSTRAHSEAKSVPCEGLQTFPAHSA 91076 Query: 117 ARCHPGFRTAKPRHE 131 A C P F+T + H+ Sbjct: 91077 AACEPRFKTVRTDHQ 91121 >scaffold_25 Length = 667690 Score = 32.3 bits (72), Expect = 2.1 Identities = 22/85 (25%), Positives = 40/85 (47%) Frame = +1 Query: 273 VKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTS 332 ++++H D + TSN T+S S T S + SS S A + I ++ ++ Sbjct: 305662 LENEHEDSSTTSNGETASTSDTTTTSGGTKSSSQSLSSSSTSKNAITLPSGRILRRRNSA 305841 Query: 333 SADAKNVSVTSEALSSNPSYNREKR 357 S+ + S ++ + S+ P R KR Sbjct: 305842 SSSSHFTSSSNSSRSNRPPTKRSKR 305916 >scaffold_3 Length = 2609234 Score = 32.3 bits (72), Expect = 2.1 Identities = 83/441 (18%), Positives = 143/441 (32%), Gaps = 15/441 (3%) Frame = -2 Query: 199 PDRKSRILAKSASTSKPEFEFSRLDFPELQSPKNSNMPETQKPPRWGPLGPAASNMPLLG 258 P+ + ++A+ PE + D PEL +P+ +PE +P P AA +P L Sbjct: 2824 PELSTPDAVETATPDTPELDAP--DTPELDAPEAPELPELPEPAVLEPATSAAPELPTLD 2651 Query: 259 DVGKPVADMVEGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAAT 318 P ++V + + + + ++ + M + + ++ A Sbjct: 2650 APAAP--ELVTPDAPELPRPEAMERATPAALEQAAPEQAAPEAMEQATSEAMQQATSDAL 2477 Query: 319 ENVTSMINLKKTTSSADAKNVSVTSEALSSNPSYNREKRVYPAPKAKASQGGE-LEQXXX 377 E TS + T+ + +A S P+ + AP+A E +EQ Sbjct: 2476 EQATSEAMQQATSEPMEQATSDALEQATSDAPAALEQ----AAPEAMEQATSEAMEQ--- 2318 Query: 378 XXXXXXXXXXXXPSYEVLTVQEPPRIEDAEEFPNLSVASERRHRGQSPKLHSKQQTQNEF 437 + E T P +E A A E + L E Sbjct: 2317 -ATSEAMEQATSEAMEQATPDAPAALEQAAPAALQQAAPEAMEQAAPAALEQATSEPMEQ 2141 Query: 438 KTSGKKSQVPVQLDLGGMLAALEKXXXXXHASHAKPSSRPVVFSVGAVPVLSKDASSSER 497 TS Q + A+E+ A + S S ++ E+ Sbjct: 2140 DTSKPMEQATSEAMEQATSEAMEQ---------ATSEALEQATSEAMQQATSDAPAALEQ 1988 Query: 498 GRRSSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKXXXXXXXXXXXXSAVS 557 + + P++ + E + P +L++ I + A S Sbjct: 1987 AAPEAMEQATSEPMEQAT--------SEAMEQAAPAALEQAITE---------AMEQATS 1859 Query: 558 LTVASDDSQDVESGA----------SNQTPSQDNPTGPEKTE----ESVSSTPVVEGESE 603 + D S+ +E A + Q S D P E+ + E V+S P+ E Sbjct: 1858 EAMEQDTSEPMEQAAPEAMEQATPEAMQQASSDAPAALEQAKSEAMEQVTSEPM---EQA 1688 Query: 604 EPAGTEFQRDPEACQPAPDSA 624 PA E Q PEA Q A A Sbjct: 1687 APAALE-QATPEAMQQAAPKA 1628 Score = 30.8 bits (68), Expect = 6.1 Identities = 16/57 (28%), Positives = 25/57 (43%) Frame = -3 Query: 94 PTYTLESAQSVCSVPTLQYDYSQARCHPGFRTAKPRHEHVCPPPQEAKGVFKKKPSD 150 P +E QS + +Q HP R++ RH+ CPP +G F K ++ Sbjct: 2451690 PGVAMEKEQSASK------EMTQKGHHPPARSSASRHDDPCPPGTAVQGTFSKDKNE 2451538 >scaffold_32 Length = 547532 Score = 31.6 bits (70), Expect = 3.6 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Frame = +2 Query: 275 SDHTDGAVTSN----ATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKT 330 SD DGA S A+TS+P+C EL W + +V+Q + A ++ +++ L T Sbjct: 247259 SDEHDGASPSATLPPASTSTPACNGELEWRTLACLVKQPFALTILATMQD--TLLPLIAT 247432 Query: 331 TSSAD 335 T + D Sbjct: 247433 TLNWD 247447 >scaffold_11 Length = 1136692 Score = 31.2 bits (69), Expect = 4.7 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Frame = +1 Query: 128 PRHEHVCPPPQEAKGVFKKKPSDERRACEEQKSSSRRADNAVPCE----ARPAR 177 P H VC P Q +G + +P D RRA + S+ + PC+ RPAR Sbjct: 397534 PCHRPVC*PLQSHQGDPRLRPDDSRRAAK*FASTPTFRHHTQPCQHRL*TRPAR 397695 >scaffold_26 Length = 666567 Score = 30.4 bits (67), Expect = 8.0 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 11/61 (18%) Frame = +2 Query: 114 YSQARCHPGFRTAKPRHEHVCPPPQEAKGVFK-----------KKPSDERRACEEQKSSS 162 +S R H G R A PR C P + A+ K K+ D RA +QK Sbjct: 499409 WSDRRRHEGSRRAPPRRLDACGPSEHARSRSKAGCRRTRCYP*KRKGDATRAVRQQKEKE 499588 Query: 163 R 163 R Sbjct: 499589 R 499591 >scaffold_20 Length = 720398 Score = 30.4 bits (67), Expect = 8.0 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Frame = -1 Query: 118 RCHPG--FRTAKPRHEHVCPPPQEAKGVFKKKPSDERRACEEQKSSSRRADNAVPCEARP 175 RC PG ++ PRH H P A PS RRA SR A + P +RP Sbjct: 611297 RCRPGPSCQSPSPRH*HSSSPTHRAV----PGPSCSRRAVASPTRQSRSAARSRPAASRP 611130 Score = 30.4 bits (67), Expect = 8.0 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Frame = -1 Query: 118 RCHPG--FRTAKPRHEHVCPPPQEAKGVFKKKPSDERRACEEQKSSSRRADNAVPCEARP 175 RC PG ++ PRH H P A PS RRA SR A + P +RP Sbjct: 608864 RCRPGPSCQSPSPRH*HSSSPTHRAV----PGPSCSRRAVASPTRQSRSAARSRPAASRP 608697 Database: genome.fa Posted date: Jan 19, 2010 5:06 PM Number of letters in database: 41,633,360 Number of sequences in database: 218 Lambda K H 0.311 0.126 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,716,853 Number of Sequences: 218 Number of extensions: 760588 Number of successful extensions: 4378 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 45 Number of HSP's that attempted gapping in prelim test: 2982 Number of HSP's gapped (non-prelim): 2859 length of query: 858 length of database: 13,877,786 effective HSP length: 111 effective length of query: 747 effective length of database: 13,853,588 effective search space: 10348630236 effective search space used: 10348630236 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 66 (30.0 bits)