TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000106_1.0 # Protein # SECIS binding protein 2 (SBP2) # Mus musculus # Complete (858 letters) Database: genome.fa 799 sequences; 32,967,507 total letters Searching.....................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_207 98 2e-20 scaffold_191 35 0.20 scaffold_12 35 0.20 scaffold_32 33 0.75 scaffold_128 32 2.2 scaffold_75 32 2.8 scaffold_15 31 4.8 scaffold_4 31 4.8 >scaffold_207 Length = 55585 Score = 98.2 bits (243), Expect = 2e-20 Identities = 77/309 (24%), Positives = 144/309 (46%), Gaps = 6/309 (1%) Frame = -1 Query: 490 KDASSSERGRRSSQMKTPHNPLDSSAPLMKKGKQREIPKAKK---PTSLKKIILKXXXXX 546 +D + ++S + + L PL + K+ K +K PT LK+ I Sbjct: 55489 EDYVKDDTNKQSQSHQHTRDKLVKKQPLQSQKKKCFYVKTEKKIKPTRLKRDIELYNSIK 55310 Query: 547 XXXXXXXSAVSLTVASDDSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGE--SEE 604 ++ L ++ VE+ + T D+ + + S +S G+ S Sbjct: 55309 ESYFKKENSTQL---ENEESKVETATTPPTKLLDDNSTIDNNNNSDNSNGDNNGDNNSNS 55139 Query: 605 PAGTEFQRDPEACQPAPDSATFPKIHSRRFRDYCSQML-SKEVDACVTGLLKELVRFQDR 663 + + D E + D T + ++Y +Q+L +KE+D L++ L FQ++ Sbjct: 55138 NSNSNTNNDTENNNNSSDIIT-TNTTNVNIKEYINQILPNKEIDNTCKELIRILKGFQEK 54962 Query: 664 MYQKDPVKAKTKRRLVLGLREVLKHLKLRKLKCIIISPNCEKTQSKGGLDDTLHTIIDCA 723 +Q + K K+R V GLREVLK L++ K+ C+IIS N E+ G L+ + II Sbjct: 54961 SFQNNNPN-KVKKRFVSGLREVLKLLEVDKISCVIISSNIEEN---GALNKLVEDIIRLC 54794 Query: 724 CEQNIPFVFALNRKALGRSLNKAVPVSIVGIFSYDGAQDQFHKMVELTMAARQAYKTMLE 783 + + + FAL+ ++LG+S+ K + +S++GI YDGA + + K+ T +R + + Sbjct: 54793 RSKKVLYTFALSSRSLGKSIGKTIKISVLGILDYDGANEIYQKLFNQTKQSRDEFFKLQN 54614 Query: 784 TMRQEQAGE 792 ++ + + Sbjct: 54613 IIKNNNSND 54587 >scaffold_191 Length = 59679 Score = 35.4 bits (80), Expect = 0.20 Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 1/145 (0%) Frame = -3 Query: 208 KSASTSKPEFEFSRLDFPELQSPKNSNMPETQKPPRWGPLG-PAASNMPLLGDVGKPVAD 266 KS +T+ P + + SP+++ P+ + P + P GKP+A Sbjct: 57193 KSTATTSPRVKSTTTSTGVTSSPRSTITSTVVSSPKSTAISTPTKPSTP----TGKPIAS 57026 Query: 267 MVEGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMIN 326 V S + ++ +TTSSPS T LS T + T S S +T T+ + Sbjct: 57025 KVSSLTPTSSPSTTTRSATSTTSSPS-TNRLSGTFRNLSLGATSGSSSPRSTTTTTTTTS 56849 Query: 327 LKKTTSSADAKNVSVTSEALSSNPS 351 +SS T+ +L SNPS Sbjct: 56848 ---RSSSLSTPTKPSTTRSL-SNPS 56786 >scaffold_12 Length = 162967 Score = 35.4 bits (80), Expect = 0.20 Identities = 28/97 (28%), Positives = 42/97 (43%) Frame = -3 Query: 278 TDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAK 337 T VTS ATTS+ SCT + QT SS S++ T T+ T SS + Sbjct: 114779 TASTVTSPATTSASSCTSGTT---------QTTSSSSSSTTVTSTN----SSTMSSLTST 114639 Query: 338 NVSVTSEALSSNPSYNREKRVYPAPKAKASQGGELEQ 374 + S +S A S P ++ + + Q + +Q Sbjct: 114638 DASASSSAFSQQPVQQNNQQSSNSQQQAPQQAPQQQQ 114528 >scaffold_32 Length = 131907 Score = 33.5 bits (75), Expect = 0.75 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 5/98 (5%) Frame = +2 Query: 202 KSRILAKSASTSKPEFEFSRLDFPELQSPKNSNMPETQKPPRWGPLG---PAASNMPLLG 258 ++R+ KS + SK F FSR+ ++PKN+ P KP P P S + Sbjct: 31505 ETRVKKKSRTASKRSFRFSRIATATSKTPKNAPKPSKNKPLPEAPPNVRYPVGSALFYFY 31684 Query: 259 DVGK--PVADMVEGKMVKSDHTDGAVTSNATTSSPSCT 294 + P+ E K+++ D + + N++TS+ + T Sbjct: 31685 SNAETCPIPRWYEVKILEYDPKFSSSSYNSSTSAITST 31798 Score = 33.1 bits (74), Expect = 0.98 Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Frame = +2 Query: 285 NATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVSVTSE 344 N TT S E S P+ + + +S++ T+N+ ++IN +K + S + N + +++ Sbjct: 25772 NQTTRSQRSYSESS--PLSF--SKDFTSETNHQTQNIENLINKRKNSVSINPSNNASSTD 25939 Query: 345 ALSSN--PSYNREKRVYPAP 362 +SSN S++ ++ YP P Sbjct: 25940 TISSNSSTSFSLQQLRYPIP 25999 >scaffold_128 Length = 74555 Score = 32.0 bits (71), Expect = 2.2 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 5/74 (6%) Frame = -1 Query: 554 SAVSLTVASDDS----QDVESGASNQTPSQDNPTGPEKTEE-SVSSTPVVEGESEEPAGT 608 +++ + + +D+S QDV+ S+QT Q PT T E S SSTP + G + P Sbjct: 44156 NSIRVEIKNDESATKKQDVQLTESSQTTEQ--PTADSTTPEPSDSSTPNLTGSAASPLSK 43983 Query: 609 EFQRDPEACQPAPD 622 Q+D Q D Sbjct: 43982 SQQKDLNESQTTRD 43941 >scaffold_75 Length = 94647 Score = 31.6 bits (70), Expect = 2.8 Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 1/133 (0%) Frame = +1 Query: 630 HSRRFRDYCSQMLSKEVDACVTGLLKELVRFQDRMYQKDPVK-AKTKRRLVLGLREVLKH 688 HSR Y +L K D+ + K L + + D ++ A +L G E K Sbjct: 83290 HSRLVYIY---ILFKMADSSINEKAKPLADSKLTLTILDLIQQANNFGQLKKGANEATKS 83460 Query: 689 LKLRKLKCIIISPNCEKTQSKGGLDDTLHTIIDCACEQNIPFVFALNRKALGRSLNKAVP 748 + + +I++ + E L+ LH + C ++NIP+VF ++ LGR+ + + P Sbjct: 83461 VSRSTAEFVILAADAEP------LEILLHIPLLCE-DKNIPYVFVPSKSELGRACDVSRP 83619 Query: 749 VSIVGIFSYDGAQ 761 V + D +Q Sbjct: 83620 VVACSVIVDDKSQ 83658 >scaffold_15 Length = 160238 Score = 30.8 bits (68), Expect = 4.8 Identities = 26/126 (20%), Positives = 49/126 (38%) Frame = -1 Query: 231 KNSNMPETQKPPRWGPLGPAASNMPLLGDVGKPVADMVEGKMVKSDHTDGAVTSNATTSS 290 K+S P + P+ G + + PL V + + +D + A + + Sbjct: 20765 KDSIKPSKTEKPKLSSAGNTSRSKPLTSTVSARASTLSSRS---NDTINSAFGKTVSKTI 20595 Query: 291 PSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVSVTSEALSSNP 350 T +S ++ +SS + + T + KTT S +K+V + S LSS Sbjct: 20594 SKVTSPISKVISPRVLSPNISSPIMKSRASSTLLSLASKTTKSMSSKSVDIESNRLSSKV 20415 Query: 351 SYNREK 356 + + K Sbjct: 20414 AALKSK 20397 >scaffold_4 Length = 226909 Score = 30.8 bits (68), Expect = 4.8 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +3 Query: 309 TVSSDSAAATENVTSMINLKKTTSSADAKNVSVTSEALSSNPSYNREKRVY 359 T+SS S+ + S I SS+ KN+S + SN SYN +++ Sbjct: 106491 TISSVSSLLSSKNASPIEY*NLVSSSSTKNISSLASVAFSNSSYNNNNKLF 106643 Database: genome.fa Posted date: Jan 16, 2009 12:50 PM Number of letters in database: 32,967,507 Number of sequences in database: 799 Lambda K H 0.311 0.126 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,683,025 Number of Sequences: 799 Number of extensions: 214420 Number of successful extensions: 847 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 52 Number of HSP's that attempted gapping in prelim test: 785 Number of HSP's gapped (non-prelim): 186 length of query: 858 length of database: 10,989,169 effective HSP length: 109 effective length of query: 749 effective length of database: 10,902,078 effective search space: 8165656422 effective search space used: 8165656422 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 65 (29.6 bits)