TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
         (854 letters)

Database: genome.fa 
           9 sequences; 8,347,606 total letters

Searching.........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ct...    32   0.73 
gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 ch...    30   1.6  
gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ct...    29   3.6  
gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 ch...    28   6.2  

>gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ctg_531, whole genome shotgun
              sequence
          Length = 570487

 Score = 31.6 bits (70), Expect = 0.73
 Identities = 23/84 (27%), Positives = 37/84 (44%)
 Frame = +1

Query: 513    PLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQDGESGGDDQF 572
              P+ KK ++RE  + KK     K+    +QE   RL +      +  +          D+ 
Sbjct: 188710 PVKKKTERRESVREKKAEIAAKLDKSIQQELLNRLSQGIYGELYNFEK---------DKV 188862

Query: 573    PEQAELSGPEGMDELISTPSVEDK 596
              PE+ E S P+ +DE    P V+ K
Sbjct: 188863 PEKEEESEPDMLDETKLEPLVKRK 188934


>gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 chr2_complete, whole genome
             shotgun sequence
          Length = 1971884

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
 Frame = -3

Query: 526   AKKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQDG-----------ESGGDDQFPE 574
             + +P+  KK+    +  R  + Q     P+  SD                E G DD+ PE
Sbjct: 21138 SSEPSKTKKLKHSYKHNRPTKSQATGEQPSQPSDQNPQPNEPLEPEHIPVEVGSDDEEPE 20959

Query: 575   QAELSGPEGMDELISTPSVEDKSEEPPGTELQRDTEASHL 614
             +  + G EG +        ED+ +E P   +++  E + +
Sbjct: 20958 EGAVGGAEGGE--------EDEEDERPSEPVKKCKEITFM 20863



 Score = 28.9 bits (63), Expect = 4.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 90      YAYSPYTLDSTQNVYSVPGSQYLYNQP 116
               Y Y  YTL +T  +Y  P   Y+ N P
Sbjct: 1252625 YMYHSYTLHNTHYIYYTPRGSYIINTP 1252545



 Score = 28.9 bits (63), Expect = 4.7
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = +1

Query: 497     RMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPAF 556
               R   +K PH    +  P   +  + E  K  KP+   +    +++ + +R+     S   
Sbjct: 1965028 REQPIKIPHTKHQTERPTKSQPTKPEPSKPTKPSEPTEPSGTDKELQPERIPVEVGS--- 1965198

Query: 557     TSDDTQDGESGG---DDQFPEQAELSGP 581
                 D+T++G +GG   DD+  E+ + S P
Sbjct: 1965199 -DDETEEGAAGGGDDDDEGDEKVKPSEP 1965279


>gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ctg_529, whole genome shotgun
               sequence
          Length = 1835834

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 722     NIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGA 755
               N+P++F  ++ ALGR+   + PV    I S DG+
Sbjct: 1750393 NVPYIFVHSKVALGRACGVSRPVISCAITSRDGS 1750292


>gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 chr1_complete, whole genome
               shotgun sequence
          Length = 2540030

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 72      GASTFPPQYLSSEITLHPYAYSPYTLDSTQNVYSVPG 108
               G++  PPQ  SS   L    Y+ YTLD  + +Y + G
Sbjct: 1044786 GSTKLPPQEHSSHNLLSTILYTIYTLDVVRILYIIDG 1044896


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:27 PM
  Number of letters in database: 8,347,606
  Number of sequences in database:  9
  
Lambda     K      H
   0.311    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,985,418
Number of Sequences: 9
Number of extensions: 74722
Number of successful extensions: 318
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 155
length of query: 854
length of database: 2,782,535
effective HSP length: 100
effective length of query: 754
effective length of database: 2,781,635
effective search space: 2097352790
effective search space used: 2097352790
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)