TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo sapiens # Complete (854 letters) Database: genome.fa 5578 sequences; 78,051,097 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAQY01000810.1| Phytophthora sojae strain P6497 Psojae_Cont81... 70 1e-11 gb|AAQY01000414.1| Phytophthora sojae strain P6497 Psojae_Cont41... 39 0.041 gb|AAQY01001545.1| Phytophthora sojae strain P6497 Psojae_Cont15... 35 0.45 gb|AAQY01000218.1| Phytophthora sojae strain P6497 Psojae_Cont21... 35 0.59 gb|AAQY01000948.1| Phytophthora sojae strain P6497 Psojae_Cont94... 34 1.0 gb|AAQY01001234.1| Phytophthora sojae strain P6497 Psojae_Cont12... 34 1.3 gb|AAQY01001642.1| Phytophthora sojae strain P6497 Psojae_Cont16... 33 1.7 gb|AAQY01000666.1| Phytophthora sojae strain P6497 Psojae_Cont66... 33 1.7 gb|AAQY01000545.1| Phytophthora sojae strain P6497 Psojae_Cont54... 33 1.7 gb|AAQY01000738.1| Phytophthora sojae strain P6497 Psojae_Cont73... 33 2.2 gb|AAQY01000670.1| Phytophthora sojae strain P6497 Psojae_Cont67... 33 2.2 gb|AAQY01000204.1| Phytophthora sojae strain P6497 Psojae_Cont20... 32 3.8 gb|AAQY01000196.1| Phytophthora sojae strain P6497 Psojae_Cont19... 32 3.8 gb|AAQY01001376.1| Phytophthora sojae strain P6497 Psojae_Cont13... 32 5.0 gb|AAQY01001320.1| Phytophthora sojae strain P6497 Psojae_Cont13... 32 5.0 gb|AAQY01000645.1| Phytophthora sojae strain P6497 Psojae_Cont64... 32 6.5 gb|AAQY01000156.1| Phytophthora sojae strain P6497 Psojae_Cont15... 32 6.5 gb|AAQY01000092.1| Phytophthora sojae strain P6497 Psojae_Cont92... 32 6.5 gb|AAQY01000044.1| Phytophthora sojae strain P6497 Psojae_Cont44... 32 6.5 gb|AAQY01003108.1| Phytophthora sojae strain P6497 Psojae_Cont31... 31 8.5 >gb|AAQY01000810.1| Phytophthora sojae strain P6497 Psojae_Cont810, whole genome shotgun sequence Length = 104728 Score = 70.5 bits (171), Expect = 1e-11 Identities = 39/108 (36%), Positives = 61/108 (56%) Frame = -1 Query: 656 QDRMYQKDPVKAKTKRRLVLGLREVXXXXXXXXXXCVIISPNCEKIQSKGGLDDTLHTII 715 Q+R + +P + K RRLVLGL EV ++I+ + E ++ + + I+ Sbjct: 103912 QERAHSLNPKQDKRSRRLVLGLHEVRRGLLNKKIRLLVIATDLEGCEA---VAQEIAEIV 103742 Query: 716 DYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQDQFHKMV 763 A EQ +P + +NR+ LGR+L K V VS VG++S DGA D F K++ Sbjct: 103741 AIAAEQEVPMLSPMNRRKLGRTLQKKVRVSCVGVYSVDGANDLFQKIL 103598 >gb|AAQY01000414.1| Phytophthora sojae strain P6497 Psojae_Cont414, whole genome shotgun sequence Length = 131055 Score = 38.9 bits (89), Expect = 0.041 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 3/93 (3%) Frame = -2 Query: 510 SSAPLMKK---GKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQDGES 566 +SAP KK GK+ ++ K KK + ++ E +RL+ A+ A D ++ E Sbjct: 36173 ASAPQQKKSVRGKKGKMKKMKKKYA-------DQDEEDRRLRMEALGHAVEEDQEEEEEP 36015 Query: 567 GGDDQFPEQAELSGPEGMDELISTPSVEDKSEE 599 D + AE SG E + STPS ++ SEE Sbjct: 36014 SKDGD--DSAEQSGDENEEAADSTPSKKEASEE 35922 >gb|AAQY01001545.1| Phytophthora sojae strain P6497 Psojae_Cont1545, whole genome shotgun sequence Length = 99518 Score = 35.4 bits (80), Expect = 0.45 Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 9/145 (6%) Frame = -1 Query: 237 QKQPKWGPVHSVST---------DISLLREVVKPAAVLSKGEIVVKNNPNESVTANAATN 287 Q Q + GP ST ++ R V P+ S G P S A A Sbjct: 63092 QAQSRRGPSGVASTVVTPMPSTPSVASTRPAVPPS---SPGMTSPSGRPLRSTAATARVL 62922 Query: 288 SPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSSEALSS 347 + C EL TP V+R S S++ + S + L +SA P +VS SSE+++ Sbjct: 62921 NAHCL-ELLETPDYLVLR---SARRSSSSGSSGSALGLNAPGTSAHPLSVS-ESSESVAD 62757 Query: 348 DPSYNKEKHIIHPTQKSKASQGSDL 372 DP E + P +AS S L Sbjct: 62756 DPGSADELSLADPDASRRASLASAL 62682 >gb|AAQY01000218.1| Phytophthora sojae strain P6497 Psojae_Cont218, whole genome shotgun sequence Length = 116566 Score = 35.0 bits (79), Expect = 0.59 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%) Frame = +2 Query: 282 ANAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPS 341 A+ + +S S T SW+P VV TL+T +SAAP + + + P+ + P Sbjct: 54716 ADTSPSSASTTSSGSWSP---VVGVTLATVVSAAPSS-ANCTPYAALPPCRLPQRLPPPR 54883 Query: 342 SE-----ALSSDPSYNKEKHIIHPT 361 +E L+S+PS ++ + ++HP+ Sbjct: 54884 NEQGWLSPLASNPSPSRRRRLLHPS 54958 >gb|AAQY01000948.1| Phytophthora sojae strain P6497 Psojae_Cont948, whole genome shotgun sequence Length = 264648 Score = 34.3 bits (77), Expect = 1.0 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 13/80 (16%) Frame = -2 Query: 754 GAQDQFHKMVELTVAARQAYKTMLENVQQELVGEP-RPQAPPSLPTQGPSCPAEDG---- 808 G +DQ + + RQ L V+ +L G P R + P +P Q P CP+E G Sbjct: 154619 GGRDQGQRDHRVQQPGRQGLARGLRAVRADLGGAPGRDRRPQQVPDQRPHCPSEPGAEPL 154440 Query: 809 --------PPALKEKEEPHY 820 PAL PH+ Sbjct: 154439 PLGAAQRQQPALPHHAGPHH 154380 >gb|AAQY01001234.1| Phytophthora sojae strain P6497 Psojae_Cont1234, whole genome shotgun sequence Length = 109959 Score = 33.9 bits (76), Expect = 1.3 Identities = 26/73 (35%), Positives = 32/73 (43%) Frame = -2 Query: 272 VKNNPNESVTANAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASS 331 V N P TA+AAT SP T + S TP Q +T A + T+ T ASS Sbjct: 53312 VTNTP----TASAATGSPVTTTQPSTTPTAESTLQPSTTTSGATTQAPTASTPTDTTASS 53145 Query: 332 ADPKNVSIPSSEA 344 + PSS A Sbjct: 53144 ISTPTATNPSSTA 53106 >gb|AAQY01001642.1| Phytophthora sojae strain P6497 Psojae_Cont1642, whole genome shotgun sequence Length = 157348 Score = 33.5 bits (75), Expect = 1.7 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 16/134 (11%) Frame = -2 Query: 499 SQMKTPH--NPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPAF 556 S+MK H L SA ++ + E + + S + +E QE + +E+ + A Sbjct: 69480 SEMKWVHLRRALHESATIVDASAEVEDAEGESADSDADSVAEEEQEFDEAEKEDKTTQAP 69301 Query: 557 -TSDDTQDGESGGDDQFPEQAE-------------LSGPEGMDELISTPSVEDKSEEPPG 602 TSD + D S +++F EQAE P + E P E++ +E Sbjct: 69300 PTSDASSDLVSEEEEEFNEQAEEEDEHETEATSAPTKAPTNLSESSDVPEEEEEFDEEEK 69121 Query: 603 TELQRDTEASHLAP 616 E Q T + AP Sbjct: 69120 EEDQHTTTTTTSAP 69079 >gb|AAQY01000666.1| Phytophthora sojae strain P6497 Psojae_Cont666, whole genome shotgun sequence Length = 124021 Score = 33.5 bits (75), Expect = 1.7 Identities = 19/66 (28%), Positives = 32/66 (48%) Frame = +2 Query: 763 VELTVAARQAYKTMLENVQQELVGEPRPQAPPSLPTQGPSCPAEDGPPALKEKEEPHYIE 822 V T + R+A ++ NVQ L E P+ PPS T SC + +++E + ++ Sbjct: 42851 VSFTNSLRRAQVSISMNVQDLLTPESAPECPPSPATSVASCSSTSSESSVEETPKRGWVA 43030 Query: 823 IWKKHL 828 + HL Sbjct: 43031 PFLLHL 43048 >gb|AAQY01000545.1| Phytophthora sojae strain P6497 Psojae_Cont545, whole genome shotgun sequence Length = 36301 Score = 33.5 bits (75), Expect = 1.7 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%) Frame = +3 Query: 510 SSAPLMKKGKQREIPKAKKPTSLKKIILK-----ERQERKQRLQENAVSPAFTSDDTQDG 564 ++A +KGKQ P + P L++IILK + RL +N ++P T D Sbjct: 12456 TTAKATRKGKQESPPDRRMPQVLRRIILKHLVKDSHVAQNYRLVKNLLTP--MDGSTADR 12629 Query: 565 ESGGDDQFPEQAELSGPEGMDEL 587 GG+ + ++G E D L Sbjct: 12630 NDGGNAFKNTKKNINGREYFDSL 12698 >gb|AAQY01000738.1| Phytophthora sojae strain P6497 Psojae_Cont738, whole genome shotgun sequence Length = 393083 Score = 33.1 bits (74), Expect = 2.2 Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 13/176 (7%) Frame = -2 Query: 508 LDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQDGESG 567 L SA + K K+ ++ K LK ++ ++ QERK+RLQE A +++ ++ SG Sbjct: 342898 LTESALVPSKAKEIKVD-GKSLVDLKAVVYQKDQERKRRLQE-----ALAAENDEERSSG 342737 Query: 568 -GDDQFPEQAELSGPEGMDELISTPSVEDKSEEPPGTEL--QRDTEASHL-APNHTTFPK 623 G + + A L G + V +S G E +RD EA AP+ Sbjct: 342736 HGALRLGKYAHLRGGSKRRKRSDEDRVGKRSRN-SGVEARSRRDEEAKQREAPDED---- 342572 Query: 624 IHSRRFRDYCSQMLSKE-------VDACVTDLLKE--LVRFQDRMYQKDPVKAKTK 670 +R ++ML K+ + +D LK LV F+ + Y + V AK K Sbjct: 342571 -DDEAWRKKSAEMLQKKAKLYEEMANGGGSDNLKGECLVDFEAKKYMAEAVSAKEK 342407 >gb|AAQY01000670.1| Phytophthora sojae strain P6497 Psojae_Cont670, whole genome shotgun sequence Length = 62386 Score = 33.1 bits (74), Expect = 2.2 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 10/72 (13%) Frame = -1 Query: 50 YYPFVQEPPVTEQKIYTEDMAFGASTFPPQYL--------SSEITLHPYAYSPYTLDST- 100 YYP++Q PP+ +Y M PP Y SS+ P A PY+ +ST Sbjct: 58123 YYPYMQPPPMMPAPMYPPSMV----GVPPGYQLVPQTPLPSSDGMAMPSAMVPYSAESTM 57956 Query: 101 QNVYSVP-GSQY 111 + Y +P GS Y Sbjct: 57955 EGAYGMPFGSMY 57920 >gb|AAQY01000204.1| Phytophthora sojae strain P6497 Psojae_Cont204, whole genome shotgun sequence Length = 154784 Score = 32.3 bits (72), Expect = 3.8 Identities = 18/57 (31%), Positives = 25/57 (43%) Frame = -2 Query: 761 KMVELTVAARQAYKTMLENVQQELVGEPRPQAPPSLPTQGPSCPAEDGPPALKEKEE 817 K EL V R + + + G+ PQAPP+ PT G + PP +E E Sbjct: 16519 KEAELPVIGRSLVRVCMSCILSHANGQANPQAPPAAPTTGTT--TASSPPPREEHWE 16355 >gb|AAQY01000196.1| Phytophthora sojae strain P6497 Psojae_Cont196, whole genome shotgun sequence Length = 154665 Score = 32.3 bits (72), Expect = 3.8 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 4/30 (13%) Frame = +1 Query: 788 PRPQAPPSLPTQG----PSCPAEDGPPALK 813 PRP PP LPT G PS P + PP L+ Sbjct: 34018 PRPPRPPPLPTDGAYPDPSLPDDGAPPRLR 34107 >gb|AAQY01001376.1| Phytophthora sojae strain P6497 Psojae_Cont1376, whole genome shotgun sequence Length = 350951 Score = 32.0 bits (71), Expect = 5.0 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 13/85 (15%) Frame = -1 Query: 533 KKIILKERQERKQRLQE---------NAVSPAFTSDDTQDGESGGDDQFPEQAELSG--- 580 +KIILK +E ++R QE A T + + E D + ++ SG Sbjct: 268070 EKIILKLEREEEERAQEVVEEKNIEAGVDESAATGGEAGESEDSSDSDDDDSSDDSGFED 267891 Query: 581 -PEGMDELISTPSVEDKSEEPPGTE 604 P +D +S+PS E K PP +E Sbjct: 267890 KPLTIDIDVSSPSEEAKETLPPQSE 267816 >gb|AAQY01001320.1| Phytophthora sojae strain P6497 Psojae_Cont1320, whole genome shotgun sequence Length = 288360 Score = 32.0 bits (71), Expect = 5.0 Identities = 45/211 (21%), Positives = 83/211 (39%) Frame = +3 Query: 158 KFDSERADGTISSEIKSARGSHHLSIYAENSLKSDGYHKRTDRKSRIIAKNVSTSKPEFE 217 KF S T +S+ K H S+ +S+ S R D + + A + +K Sbjct: 169728 KFPSAPVVATKASQPKPPMSGHRASL--TSSVASSNPSPRPDLEDPVPADEDNNNKSRLR 169901 Query: 218 FTTLDFPELQGAENNMSEIQKQPKWGPVHSVSTDISLLREVVKPAAVLSKGEIVVKNNPN 277 ++ NN + P+ + + S+ S +E A S + + + Sbjct: 169902 IPSIFSKSSSNGNNNAT-----PRSSVLSNPSSTASTAKEEGNEARSRSWSSKLSAFSRS 170066 Query: 278 ESVTANAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSADPKNV 337 S ++NA+ +P T G T ++ A+P N S+ + + + A PK++ Sbjct: 170067 VSTSSNAS--APQSTPTPITPSAGEQGHNTPTSSPPASPHNRVSIPSAFSAPAPAAPKSM 170240 Query: 338 SIPSSEALSSDPSYNKEKHIIHPTQKSKASQ 368 S S+ S +PS + P+Q KA + Sbjct: 170241 SKLSAFLSSVEPSSSVGPASSAPSQDKKAPE 170333 >gb|AAQY01000645.1| Phytophthora sojae strain P6497 Psojae_Cont645, whole genome shotgun sequence Length = 313704 Score = 31.6 bits (70), Expect = 6.5 Identities = 16/42 (38%), Positives = 19/42 (45%) Frame = -1 Query: 594 EDKSEEPPGTELQRDTEASHLAPNHTTFPKIHSRRFRDYCSQ 635 E + EPPG LQ D SH+A H+RR R Q Sbjct: 34266 ERRGREPPGGRLQEDQAQSHVAGRRPRPRSAHARRVRPPAQQ 34141 >gb|AAQY01000156.1| Phytophthora sojae strain P6497 Psojae_Cont156, whole genome shotgun sequence Length = 36760 Score = 31.6 bits (70), Expect = 6.5 Identities = 13/37 (35%), Positives = 15/37 (40%) Frame = -3 Query: 788 PRPQAPPSLPTQGPSCPAEDGPPALKEKEEPHYIEIW 824 PRP +PPS P P P PP+ P W Sbjct: 32177 PRPSSPPSSPQPSPPSPPRPSPPSPPRPSPPQPSRPW 32067 >gb|AAQY01000092.1| Phytophthora sojae strain P6497 Psojae_Cont92, whole genome shotgun sequence Length = 45075 Score = 31.6 bits (70), Expect = 6.5 Identities = 13/38 (34%), Positives = 16/38 (42%) Frame = +1 Query: 782 QELVGEPRPQAPPSLPTQGPSCPAEDGPPALKEKEEPH 819 Q+ G PR P P + P C PPA + PH Sbjct: 41524 QQAAGSPRSSPPRPCPRRPPDCGTSGSPPAAACRPPPH 41637 >gb|AAQY01000044.1| Phytophthora sojae strain P6497 Psojae_Cont44, whole genome shotgun sequence Length = 88231 Score = 31.6 bits (70), Expect = 6.5 Identities = 20/70 (28%), Positives = 34/70 (48%) Frame = +2 Query: 720 EQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQDQFHKMVELTVAARQAYKTMLEN 779 ++N+P+VF ++ ALGR+ + PV I S D +Q ++M E Sbjct: 47207 DKNVPYVFVPSKVALGRACGVSRPVISASITSNDASQ------------LGPQIQSMREQ 47350 Query: 780 VQQELVGEPR 789 ++Q L+ PR Sbjct: 47351 IEQLLI*APR 47380 >gb|AAQY01003108.1| Phytophthora sojae strain P6497 Psojae_Cont3108, whole genome shotgun sequence Length = 848 Score = 31.2 bits (69), Expect = 8.5 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = -3 Query: 275 NPNESVTANAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSADP 334 +P + +++ +SPS SW G+ +R T S E S P + ++ IN +SS P Sbjct: 798 SPGATA*LSSSASSPSSAARFSWARRGFSMRPTCS-ENSVTPLSNSAFIN----SSS*SP 634 Query: 335 KNVSIPSSEALSS 347 S+P S SS Sbjct: 633 IFPSLPRSWVQSS 595 Database: genome.fa Posted date: Jan 19, 2010 5:09 PM Number of letters in database: 78,051,097 Number of sequences in database: 5578 Lambda K H 0.311 0.128 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,155,391 Number of Sequences: 5578 Number of extensions: 1005883 Number of successful extensions: 6808 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 738 Number of HSP's successfully gapped in prelim test: 291 Number of HSP's that attempted gapping in prelim test: 4587 Number of HSP's gapped (non-prelim): 3879 length of query: 854 length of database: 26,017,032 effective HSP length: 115 effective length of query: 739 effective length of database: 25,375,562 effective search space: 18752540318 effective search space used: 18752540318 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 69 (31.2 bits)