TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo sapiens # Complete (854 letters) Database: genome.fa 218 sequences; 41,633,360 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_38 49 2e-05 scaffold_18 33 1.2 scaffold_41 33 1.6 scaffold_3 33 1.6 scaffold_6 32 2.1 scaffold_4 32 3.6 scaffold_28 31 6.1 scaffold_20 31 6.1 scaffold_5 31 6.1 scaffold_13 30 8.0 >scaffold_38 Length = 375890 Score = 49.3 bits (116), Expect = 2e-05 Identities = 50/248 (20%), Positives = 89/248 (35%), Gaps = 88/248 (35%) Frame = -1 Query: 506 NPLDSSAPLMKKGK-----------------------QREIPKAKKPTSLKKIILKERQE 542 N LD++AP ++GK +R + K KKP+ +++++ +E+ Sbjct: 123884 NQLDATAPTRRRGKVCLCLNVLLQLRASTALIGHAPQERAVRKEKKPSQMRQLMKEEQTA 123705 Query: 543 RKQRLQENAVSPAFT----------------SDDTQDGESGGDDQFPEQAE-LSGPEGMD 585 R++ EN + + S + +GE P + + PE + Sbjct: 123704 RRRAHDENVTGASSSGSIMPESRAQIPADPPSSPSPEGEGKSHSSEPSTVKGVDDPEALS 123525 Query: 586 ELISTPS----VEDKSEEPPGTELQRDTEASHLAPNHTTF-----PKIHSRRFRD----- 631 L + S +++ EPP +L T A + + F P++ S FR+ Sbjct: 123524 SLTAAVSTSLTLDESKSEPPQRKLTSPTSARTMPALESNFFPNRAPRLFSNNFRECVSAL 123345 Query: 632 ----------------------------------YCSQMLSKEVDACVTDLLKELVRFQD 657 YC L EVD V LLK+ +RF + Sbjct: 123344 LCKRVCSHHGRCLSCLRIALWFGFFSSLNPLQTRYCDHALDPEVDETVKQLLKDSMRFYN 123165 Query: 658 RMYQKDPV 665 R +K+P+ Sbjct: 123164 RAVEKNPM 123141 Score = 33.5 bits (75), Expect = 0.94 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%) Frame = +2 Query: 761 KMVELTVAARQAYKTMLENVQQELVGEPRPQAPPSLPTQG----PSCPAED-GPPALKEK 815 K+ + AAR+A + + Q EP+P APP+ G P+ AED G A Sbjct: 154814 KLTQELEAAREAARAAAQAAQAHAQDEPKPPAPPAPAAPGQAALPNADAEDAGKAAPPAP 154993 Query: 816 EEPHYIEIWKKHLEAYS 832 PH+ E + E+++ Sbjct: 154994 PAPHHNENAAEEEESFA 155044 >scaffold_18 Length = 855359 Score = 33.1 bits (74), Expect = 1.2 Identities = 21/68 (30%), Positives = 29/68 (42%) Frame = -3 Query: 55 QEPPVTEQKIYTEDMAFGASTFPPQYLSSEITLHPYAYSPYTLDSTQNVYSVPGSQYLYN 114 ++ P+ +Q ++ AS PPQ + HP A+ P D Q Y G QY Sbjct: 222480 EQAPIYDQAFDSKYSPARASCPPPQTWLISLMQHPTAHKP-VYDDMQGTYGGAGGQYADV 222304 Query: 115 QPSCYRGF 122 QP R F Sbjct: 222303 QPEYSRTF 222280 >scaffold_41 Length = 363764 Score = 32.7 bits (73), Expect = 1.6 Identities = 20/59 (33%), Positives = 27/59 (45%) Frame = -3 Query: 489 CASGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRL 547 CA R RR+S PH+P P + + +P+ KK ILKER +RL Sbjct: 54297 CALFSRRRRLSHHALPHHPDGCRHP*YPRSQPSAAVTVNEPSQRKKNILKERGISLKRL 54121 >scaffold_3 Length = 2609234 Score = 32.7 bits (73), Expect = 1.6 Identities = 14/21 (66%), Positives = 15/21 (71%) Frame = -2 Query: 790 PQAPPSLPTQGPSCPAEDGPP 810 P+ PPSLP GP CP DGPP Sbjct: 232462 PRRPPSLP--GPPCP*HDGPP 232406 >scaffold_6 Length = 1473069 Score = 32.3 bits (72), Expect = 2.1 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 15/129 (11%) Frame = -1 Query: 524 PKAKKPTSLKKIILKERQERKQRLQENAVSPAFT--SDDTQDGESGGD-DQFPEQAELSG 580 P+ P L + R+ Q AV+ SDD+++G+ D D+ PE+ Sbjct: 1438020 PRQAAPEILLANLKTSRRRAVSSHQPIAVAQPINLPSDDSREGDVDKDEDREPEEPPSEA 1437841 Query: 581 PEGMDELISTPSVEDKSEEPPGTELQRDTEA-----SHLAPNHTTFPK-------IHSRR 628 P PS E SEEPP E + SH + ++ P+ H ++ Sbjct: 1437840 P---------PSEEPPSEEPPSKEPPSEESPPVEGDSHTPSSSSSLPRSAMTGCSFHKQQ 1437688 Query: 629 FRDYCSQML 637 F D SQ + Sbjct: 1437687 FSDKSSQAI 1437661 >scaffold_4 Length = 2081438 Score = 31.6 bits (70), Expect = 3.6 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 12/112 (10%) Frame = -2 Query: 529 PTSLKKIILKERQE----RKQRLQENAVSPAFTSDDTQDGESG----GDDQFPEQAELSG 580 P + KKI + R++ +KQ +EN +SP F DT +G + + E+A +G Sbjct: 1436356 PGAAKKICPRHRKKEN*VQKQN*EENTISPRFADCDTDKKRNGMAICSAETYMERARANG 1436177 Query: 581 ----PEGMDELISTPSVEDKSEEPPGTELQRDTEASHLAPNHTTFPKIHSRR 628 G ++ T S G +R++ A H + + P ++ RR Sbjct: 1436176 LAAKHRGKGGVLLTAS---------GAAARRESRAQHGSDDQHHAPHVNMRR 1436048 >scaffold_28 Length = 614053 Score = 30.8 bits (68), Expect = 6.1 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%) Frame = -3 Query: 780 VQQELVGE---PRPQAPPSLPTQGPSCPAEDGPPALKEKEEPHY 820 +QQ ++ E P+ +A P +P SCP PPALK +E P Y Sbjct: 441956 LQQPVLHERTGPKSRAEP*MPA---SCPYRPKPPALKGREGPGY 441834 >scaffold_20 Length = 720398 Score = 30.8 bits (68), Expect = 6.1 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 2/123 (1%) Frame = +3 Query: 490 ASGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQE 549 A G+ + +++ + L +K G + PK K KK + ++ + ++ Sbjct: 570477 AYGKVAKDLARQRRKDAGLVQLKKALKAGMENAAPKGKADRKTKKSADENDEDEGEDEED 570656 Query: 550 NAVSPAFTSDDTQDGESGGDDQFPEQAE--LSGPEGMDELISTPSVEDKSEEPPGTELQR 607 A +D +DG+ DD+ E E G + D+ S + + EE E + Sbjct: 570657 EEDEDA---EDAEDGDDAEDDEDDEDGEEDEDGEDNEDDAASASTSAAEEEEEEEEEEEE 570827 Query: 608 DTE 610 + E Sbjct: 570828 EAE 570836 >scaffold_5 Length = 1613056 Score = 30.8 bits (68), Expect = 6.1 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -1 Query: 313 SAAPKNVTSMINLKTIASSADPKNVSIPSS 342 S P +M+N K++ SSA PK +++PSS Sbjct: 1448656 SGLPTFFATMLNNKSLQSSATPKQIAVPSS 1448567 Score = 30.8 bits (68), Expect = 6.1 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -3 Query: 787 EPRPQAPPSLPTQGPSCPAEDGPPALKEKEEPHYIEI 823 +PRP AP LP + P P + PP+ + E IE+ Sbjct: 58628 QPRPAAPVELPHEPPVAPHKVPPPSSRPHPEAKKIEL 58518 >scaffold_13 Length = 1102880 Score = 30.4 bits (67), Expect = 8.0 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 10/90 (11%) Frame = +2 Query: 268 GEIVVKNN-------PNESVTANAA---TNSPSCTRELSWTPMGYVVRQTLSTELSAAPK 317 GE++V+NN +++TA+ TN+PSC + G V T +T + Sbjct: 796844 GELIVENNYALTDASAFKNITAHGGCTFTNNPSCASCTALHVCGEVTTSTTTTSTTTTST 797023 Query: 318 NVTSMINLKTIASSADPKNVSIPSSEALSS 347 TS T +S + + S+ S+ Sbjct: 797024 TTTSTTTTSTTTTSTTTTSTTTTSTTTTST 797113 Database: genome.fa Posted date: Jan 19, 2010 5:06 PM Number of letters in database: 41,633,360 Number of sequences in database: 218 Lambda K H 0.311 0.128 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,074,655 Number of Sequences: 218 Number of extensions: 581801 Number of successful extensions: 3712 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 21 Number of HSP's that attempted gapping in prelim test: 2764 Number of HSP's gapped (non-prelim): 2141 length of query: 854 length of database: 13,877,786 effective HSP length: 111 effective length of query: 743 effective length of database: 13,853,588 effective search space: 10293215884 effective search space used: 10293215884 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 66 (30.0 bits)