TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
         (854 letters)

Database: genome.fa 
           1696 sequences; 31,706,682 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mex17f01.p1k                                                           33   0.71 
mex58a05.q1k                                                           32   2.1  
mex307l09.q1k                                                          32   2.7  
mex497g11.p1k                                                          32   2.7  
mex325o15.q1k                                                          31   3.5  
mex531i16.p1k                                                          31   3.5  
mex521g09.q1k                                                          31   3.5  
1036_mexFOS1_13k21.p1kpIBF                                             30   6.0  
mex366h09.q1k                                                          30   6.0  
mex386e10.q1k                                                          30   7.8  
mex552k21.q1k                                                          30   7.8  
mex529h23.q1k                                                          30   7.8  
mex265m20.p1k                                                          30   7.8  

>mex17f01.p1k 
          Length = 62357

 Score = 33.5 bits (75), Expect = 0.71
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
 Frame = -2

Query: 559   DDTQDGESGGDDQFPEQAELSG-------PEGMDELISTPSVEDKSEEPPGTELQRDTEA 611
             ++ + G  G  D+    A  SG       P  M +  +  S  D+S    G E QR TEA
Sbjct: 34105 EERRGGTKGTQDRERGPAPFSGLLRAQRRPSAMQQCDA--SRRDESGLKEGGEGQRRTEA 33932

Query: 612   SHLAPNHTTFPKIHSRRFR 630
             ++ AP+  + P+IH+R  R
Sbjct: 33931 AYPAPSPISMPEIHTRTHR 33875


>mex58a05.q1k 
          Length = 50279

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 171  EIKSARGSHHLSIYAENSLKSDGYHKRTDRKSRIIAKNVSTSK 213
            ++ S  G H ++I+A N+L+ +G H+  D    ++ + +  SK
Sbjct: 6171 QLNSLMGDHPMNIFASNALRGEGIHEGMDWLRSVMLRRLELSK 6299


>mex307l09.q1k 
          Length = 53858

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 787   EPRPQAPPSLPTQGPSCPAEDGPPALKEKEEP 818
             + RPQA P+ P   P  PA++GPPAL    +P
Sbjct: 15263 QTRPQATPN-PNPTPLPPAKEGPPALPRAAKP 15355


>mex497g11.p1k 
          Length = 37254

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = -1

Query: 515  MKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQDGESGGDDQFPE 574
            +KKG    +    KP S  + +L+  QER++R +E   S +  SDD            P 
Sbjct: 9558 VKKGGAASVAPPAKPLSFAERMLQRAQERRKREREVGSSTSVNSDDAVMNLV----THPR 9391

Query: 575  QAELSGPEGMD 585
            QA L   E M+
Sbjct: 9390 QAALGQEESME 9358


>mex325o15.q1k 
          Length = 55845

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 21/88 (23%), Positives = 38/88 (43%)
 Frame = -3

Query: 496   RRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPA 555
             RR ++ +  H P        KKG  RE     +   +   + + R   ++R Q NA + A
Sbjct: 55306 RRRTRKRREHKPPSPRKKTKKKGAGRETRTRSRNK*INTKVFEYRNRTQKRKQRNA*TEA 55127

Query: 556   FTSDDTQDGESGGDDQFPEQAELSGPEG 583
                ++ +  E GG+ +  ++    G EG
Sbjct: 55126 ---EENEK*EKGGEGRGGQKCSGGGEEG 55052


>mex531i16.p1k 
          Length = 9071

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
 Frame = +3

Query: 526  AKKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQAEL---SGPE 582
            A+  T+++  I  E  ER   +++     A        G  GGD +      L   S   
Sbjct: 5385 ARAHTNIESEIAAE--ERSDHVEKGREKGAAGEGGRTSGGGGGDVRGENSVRLRVTSCGA 5558

Query: 583  GMDELISTPSVEDKSEEPPGTELQRDTEASHLAPNHTTFPKIHSRRFRDYCS 634
               E     ++  +   PP  E  RD+ A+HL+P  +T P  H++    +CS
Sbjct: 5559 SFWERTEAQTICTEKHPPPSHEPSRDS-AAHLSPYASTRPMTHNKENWRWCS 5711


>mex521g09.q1k 
          Length = 87816

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = -2

Query: 779   NVQQELVGEPRPQAPPSLPTQG----PSCPAEDGP 809
             +VQ  +V    P  PPSLPT G      CP  DGP
Sbjct: 84143 DVQSVMVTRTHPLRPPSLPTGGGGEPACCPEADGP 84039


>1036_mexFOS1_13k21.p1kpIBF 
          Length = 120440

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
 Frame = -2

Query: 27    FAGLNVAWLESSEACVFPSSAATYYPFVQEPPVTEQKIYTEDMAFGASTFPPQYLS---S 83
             FAG  ++   S +    P++AA   P +  PP    +      A  AS  PP   +   S
Sbjct: 14380 FAGQGLSPFGSVKEPAEPAAAA---PGIAAPPAASSEAPASPFAAAASALPPSPFAAAPS 14210

Query: 84    EITLHPYAYSPYTLDSTQNVYS 105
               T  P+A +PY    T  V S
Sbjct: 14209 PFTESPWAAAPYAAGHTAAVAS 14144


>mex366h09.q1k 
          Length = 6551

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 26/103 (25%), Positives = 42/103 (40%)
 Frame = +2

Query: 536 ILKERQERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSGPEGMDELISTPSVED 595
           +L+ERQ+ K  L + A+      +    GESGG         L G   MD +I       
Sbjct: 566 VLRERQQEKANLIK*ALRERSARERLGWGESGGAAVRANVRMLVG*VAMDSMIGRYGGVS 745

Query: 596 KSEEPPGTELQRDTEASHLAPNHTTFPKIHSRRFRDYCSQMLS 638
           + EE  GT     T    +  +  + P +  R   + C+++ S
Sbjct: 746 RGEEGGGTCALVSTATCAVLASPRSCP*LRIRFLTELCARVSS 874


>mex386e10.q1k 
          Length = 60303

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 22/92 (23%), Positives = 39/92 (42%)
 Frame = +2

Query: 510   SSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQDGESGGD 569
             S++PL    + R + +  +P  L+     E +ER     + A++P   S   ++ E    
Sbjct: 20411 SASPL----QHRPVRRQAEPRQLRSP--SEARERLAVRHQRAIAPTLKSRLQEEEERWAY 20572

Query: 570   DQFPEQAELSGPEGMDELISTPSVEDKSEEPP 601
               FP +   + P   D+L   P+      EPP
Sbjct: 20573 RDFPVRRGFTAPTVYDDLFPLPTAVSAFVEPP 20668


>mex552k21.q1k 
          Length = 46558

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
 Frame = -2

Query: 769   ARQAYKTMLENVQQELVGEPRPQAPP------SLPTQGPSCPAEDGPPALKEKEEPHYI 821
             AR  Y     +V  E V  PRP  PP      + P   P C   DG  A++   E  ++
Sbjct: 23634 ARTTYMMTKVSV*LERVSHPRPSLPPGAFRLGATPRDVPDCDRHDGGAAVRRPAERGWV 23458


>mex529h23.q1k 
          Length = 211377

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 781    QQELVGEPRPQAPPSLPTQGPSCPAEDGPPALKEKEEP 818
              +Q+L+   R   PPSLP QG  C A +    L+   EP
Sbjct: 177482 KQQLLRPSRACVPPSLPVQGAGCLAVESCKRLQR*PEP 177595


>mex265m20.p1k 
          Length = 5309

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 781  QQELVGEPRPQAPPSLPTQGPSCPAEDGPPALKEK 815
            QQ  +  PRP+ PP+   +G S P    PPA +++
Sbjct: 1009 QQRGLSRPRPRTPPAEQQRGQSPPRPRTPPAERQR 905


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 31,706,682
  Number of sequences in database:  1696
  
Lambda     K      H
   0.311    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,952,272
Number of Sequences: 1696
Number of extensions: 544703
Number of successful extensions: 4382
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 173
Number of HSP's that attempted gapping in prelim test: 3089
Number of HSP's gapped (non-prelim): 2315
length of query: 854
length of database: 10,568,894
effective HSP length: 109
effective length of query: 745
effective length of database: 10,384,030
effective search space: 7736102350
effective search space used: 7736102350
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)