TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo sapiens # Complete (854 letters) Database: genome.fa 799 sequences; 32,967,507 total letters Searching.....................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_207 89 2e-17 scaffold_215 36 0.15 scaffold_86 35 0.26 scaffold_284 34 0.44 scaffold_364 32 1.7 scaffold_168 32 2.2 scaffold_443 32 2.8 scaffold_311 31 3.7 scaffold_271 31 4.8 scaffold_31 31 4.8 scaffold_29 31 4.8 scaffold_328 30 6.3 scaffold_159 30 8.2 scaffold_131 30 8.2 >scaffold_207 Length = 55585 Score = 88.6 bits (218), Expect = 2e-17 Identities = 71/260 (27%), Positives = 120/260 (46%), Gaps = 11/260 (4%) Frame = -1 Query: 525 KAKKPTSLKKII-----LKERQERKQRL-----QENAVSPAFTSDDTQDGESGGDDQFPE 574 K KPT LK+ I +KE +K+ +E+ V A T ++ D Sbjct: 55366 KKIKPTRLKRDIELYNSIKESYFKKENSTQLENEESKVETATTPPTKLLDDNSTIDNNNN 55187 Query: 575 QAELSGPEGMDELISTPSVEDKSEEPPGTELQRDTEASHLAPNHTTFPKIHSRRFRDYCS 634 +G D + S + + + +S + +TT I ++Y + Sbjct: 55186 SDNSNGDNNGDN-----NSNSNSNSNTNNDTENNNNSSDIITTNTTNVNI-----KEYIN 55037 Query: 635 QML-SKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVXXXXXXXXXXCVI 693 Q+L +KE+D +L++ L FQ++ +Q + K K+R V GLREV CVI Sbjct: 55036 QILPNKEIDNTCKELIRILKGFQEKSFQNNNPN-KVKKRFVSGLREVLKLLEVDKISCVI 54860 Query: 694 ISPNCEKIQSKGGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYD 753 IS N I+ G L+ + II + + + FAL+ ++LG+S+ K + +SV+GI YD Sbjct: 54859 ISSN---IEENGALNKLVEDIIRLCRSKKVLYTFALSSRSLGKSIGKTIKISVLGILDYD 54689 Query: 754 GAQDQFHKMVELTVAARQAY 773 GA + + K+ T +R + Sbjct: 54688 GANEIYQKLFNQTKQSRDEF 54629 >scaffold_215 Length = 53335 Score = 35.8 bits (81), Expect = 0.15 Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 3/226 (1%) Frame = -3 Query: 396 TVQEPPRIEDAEEFPNLAVASERRDRIETPKFQSKQQPQDNFKNNVKKSQLPVQLDLGGM 455 T E P EE P + SE + T S++QP ++ ++ + ++ + Sbjct: 8054 TTSEEPAESTTEEQPAESTTSEEQPAESTT---SEEQPAESTESEEQPAESTTEEQPAES 7884 Query: 456 LTALEKKQHSQHAKQXXXXXXXXXXXXXXXXXECASGE---RGRRMSQMKTPHNPLDSSA 512 T+ E+ S +++ + E + T P +S+ Sbjct: 7883 TTSEEQPAESTESEEQPSESTTEEQSAESTTSDEQPSESTTEEQSTESTTTSEEPAESTE 7704 Query: 513 PLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQDGESGGDDQF 572 + + + ++ ++ E Q +++ E+A S T + T E + Sbjct: 7703 SEEQPSESTNEEPVSEESTGEESTTSEEQTSEEQSTESATSEEQTDEPTTSEEPASEATS 7524 Query: 573 PEQAELSGPEGMDELISTPSVEDKSEEPPGTELQRDTEASHLAPNH 618 E AE + E +E + + SEEP +EAS A ++ Sbjct: 7523 EESAESTTSEAPEESTESEETVEASEEPADESANEASEASEKAESN 7386 >scaffold_86 Length = 87693 Score = 35.0 bits (79), Expect = 0.26 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%) Frame = -2 Query: 780 VQQELVGEPRPQAPPSLPTQG--PSCPAEDGPPALKEKEEP 818 VQ L P + PP+ PTQ P+ P ++ PPA+ +EEP Sbjct: 8231 VQV*LPASPTQEEPPATPTQEEPPASPTQEEPPAIPTQEEP 8109 Score = 33.1 bits (74), Expect = 0.97 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = -2 Query: 781 QQELVGEPRPQAPPSLPTQG--PSCPAEDGPPALKEKEEP 818 Q+E P + PP++PTQ P+ P ++ PPA +E+P Sbjct: 8174 QEEPPASPTQEEPPAIPTQEEPPASPIQEQPPASPIQEQP 8055 Score = 31.6 bits (70), Expect = 2.8 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = -2 Query: 781 QQELVGEPRPQAPPSLPTQG--PSCPAEDGPPALKEKEEP 818 Q+E P + PP+ PTQ P+ P ++ PPA +E+P Sbjct: 8201 QEEPPATPTQEEPPASPTQEEPPAIPTQEEPPASPIQEQP 8082 >scaffold_284 Length = 43694 Score = 34.3 bits (77), Expect = 0.44 Identities = 21/62 (33%), Positives = 31/62 (50%) Frame = +3 Query: 509 DSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQDGESGG 568 D KK K+R+ K KK +K KE++ERK+ + S + +DDT D S Sbjct: 37164 DEEEEQTKKEKKRKEKKEKKKKKKEK---KEKKERKKEKKRKESSSSSENDDTIDNNSNN 37334 Query: 569 DD 570 +D Sbjct: 37335 ND 37340 >scaffold_364 Length = 33227 Score = 32.3 bits (72), Expect = 1.7 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = -1 Query: 403 IEDAEEFPNLAVASERRDRIETPKFQSKQQPQDNFKNNVKKSQLPVQ 449 +E +E N + S R+ + + KQQPQDN K N K +L ++ Sbjct: 12758 LEKKQETINQLLESNRQLKNQLESTHEKQQPQDNIKENTDKLKLELE 12618 >scaffold_168 Length = 64553 Score = 32.0 bits (71), Expect = 2.2 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = +1 Query: 771 QAYKTMLENVQQELVGEPRPQAPPSLPTQGPSCPAEDGPPAL-KEKEEPH 819 Q + + + QQ L G+P+P PP QGP + GP + ++ PH Sbjct: 14035 QRIQLLEQQKQQSLSGQPQPPPPPPNTKQGPQPNSPKGPVMMDRQPMSPH 14184 >scaffold_443 Length = 24279 Score = 31.6 bits (70), Expect = 2.8 Identities = 45/187 (24%), Positives = 64/187 (34%), Gaps = 21/187 (11%) Frame = -1 Query: 190 KSDGYHKRTDRKSRIIAKNVSTS---KPEFEFTTLD-------FPELQGAENNMSEI--- 236 K HK K I N T KP+ + T FP L G E E Sbjct: 23652 KGSNIHKAKKSKKIINHSNTETDSKEKPQQKPTQPQTPPGPQHFPPLNGKEGTSVETVVS 23473 Query: 237 -QKQPKWGPVHSVSTDISLLREVVKPAAVLSKGEIVVKNNPNESVTANAATNSPSCTREL 295 + +WGP S V AA + + T AAT+SPS + Sbjct: 23472 ESTKKEWGPADKKSV------VPVDTAAAAAA----------TTTTTTAATSSPSTAAAV 23341 Query: 296 SWTPMGYVVRQTLSTELSAAPKNVTSMI-------NLKTIASSADPKNVSIPSSEALSSD 348 S TP + + S+ PK S + KT +P + +S +S Sbjct: 23340 STTPAPAKSSSSKKSSPSSQPKKSPSKVEDKKRTSEKKTSDKKVEPAVATPSTSSPSASS 23161 Query: 349 PSYNKEK 355 PS +++K Sbjct: 23160 PSSDEKK 23140 >scaffold_311 Length = 38775 Score = 31.2 bits (69), Expect = 3.7 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = +1 Query: 58 PVTEQKIYTEDMAFGASTFPP--QYLSSEITLHPYAYSP-YTLDSTQNVY 104 PV + K T+D ++ +T PP L++ T +P +P Y +D T ++Y Sbjct: 30493 PVNQAKPITDDDSYNITTLPPIRDVLATLFTCYPNKETPSYLIDKTDSIY 30642 >scaffold_271 Length = 46214 Score = 30.8 bits (68), Expect = 4.8 Identities = 22/107 (20%), Positives = 45/107 (42%) Frame = +2 Query: 493 ERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAV 552 E + ++K HN + S + K+ +++E + K K KE++ERK + ++ Sbjct: 40469 EEQKSHKKLKINHNSENDSIKIYKQDEEKEEERENKKEKRDKKEKKEKKERKDK-KDKKD 40645 Query: 553 SPAFTSDDTQDGESGGDDQFPEQAELSGPEGMDELISTPSVEDKSEE 599 + D + E D + + + + D+ S DK E+ Sbjct: 40646 KKEKSKDKSSSKEEKSDKKDKKDKKEKSKDKKDKSSSKEEKSDKKEK 40786 >scaffold_31 Length = 135748 Score = 30.8 bits (68), Expect = 4.8 Identities = 50/206 (24%), Positives = 80/206 (38%), Gaps = 2/206 (0%) Frame = +3 Query: 165 DGTISSEIKSARGSHHLSIYAENS--LKSDGYHKRTDRKSRIIAKNVSTSKPEFEFTTLD 222 + +I + S+ S LS A +S + S T S I + STS F+ + Sbjct: 2127 ESSIENSSSSSTSSSTLSTSASSSTEISSASSSIETPDSSSSIENSASTSS-SFKAPSSS 2303 Query: 223 FPELQGAENNMSEIQKQPKWGPVHSVSTDISLLREVVKPAAVLSKGEIVVKNNPNESVTA 282 E A + S I+ + + ++ I A+ LS + S Sbjct: 2304 I-ETSAASSASSSIENPASSSSIENPASPIET------SASSLSIETSASSAPSSSSSIK 2462 Query: 283 NAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSS 342 N+A +S S S + + + S E SAA ++ + N K SS D S +S Sbjct: 2463 NSAASSSSIETSASSSSVDAPTESSSSNENSAA-SSIENSSNEKPAISSGDLSETSSEAS 2639 Query: 343 EALSSDPSYNKEKHIIHPTQKSKASQ 368 SS+ S EK ++ SK+SQ Sbjct: 2640 SETSSETSETSEKS-SETSETSKSSQ 2714 >scaffold_29 Length = 138075 Score = 30.8 bits (68), Expect = 4.8 Identities = 32/115 (27%), Positives = 43/115 (37%), Gaps = 11/115 (9%) Frame = +3 Query: 253 SLLREVVKPAAVLSKGEIVVKNNPNESVTANAATNSPSCTRELSWTPMGYVVRQTLSTEL 312 SLL +V P + P V +N+ NSPS + T V +S + Sbjct: 85254 SLLNKVPPPPPKSTGTSTPSSPAPTSPVFSNSGNNSPSPSPASLSTSASPVPSPGMSPII 85433 Query: 313 SAAP---KNVTSMIN--------LKTIASSADPKNVSIPSSEALSSDPSYNKEKH 356 S+ P N TS N L T S NVS ++L+ S K KH Sbjct: 85434 SSQPIDSNNTTSSTNPIRTSVSFLNTSGGSGTTSNVSPTDKKSLTLSSSQIKSKH 85598 >scaffold_328 Length = 35979 Score = 30.4 bits (67), Expect = 6.3 Identities = 23/95 (24%), Positives = 40/95 (42%) Frame = -3 Query: 276 PNESVTANAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSADPK 335 P T N++TNS C R S T + + + A KN T++ N TI ++ Sbjct: 30205 PKTKCTPNSSTNSKCCNR--SSTFRSTTTTTSTISNSTTATKNSTAITNSTTITTTNSAS 30032 Query: 336 NVSIPSSEALSSDPSYNKEKHIIHPTQKSKASQGS 370 + S S+ P+ + I+ T + ++ S Sbjct: 30031 TAT--KSRYFSNYPTTSSNSRFINITSNTPTTRSS 29933 >scaffold_159 Length = 66391 Score = 30.0 bits (66), Expect = 8.2 Identities = 27/117 (23%), Positives = 50/117 (42%) Frame = +3 Query: 259 VKPAAVLSKGEIVVKNNPNESVTANAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKN 318 ++P SK ++ NN N ++T N++ + T S T + S+ S++ + Sbjct: 10707 IQPDPTNSKLTVLTNNNVNSNITNNSSVTATVPTIITSTT--------SSSSSSSSSSSS 10862 Query: 319 VTSMINLKTIASSADPKNVSIPSSEALSSDPSYNKEKHIIHPTQKSKASQGSDLEQN 375 T+ I S + N+ PSS LSS+ H P + A+ + + Q+ Sbjct: 10863 STAAIQTPLSPSLSSSSNLIEPSSPILSSNNQTPISLHTSSPAVITAAATIASVTQS 11033 >scaffold_131 Length = 73580 Score = 30.0 bits (66), Expect = 8.2 Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 7/87 (8%) Frame = +2 Query: 40 ACVFPSSAATYYPFVQEPPVTEQKIYTEDMAFGASTFPPQYLSSEITLHPYAYSPYTLDS 99 A +S AT T T +A + T PP +SS + PY SP+TL S Sbjct: 11036 AATTSTSTATAVGTTTTTSTTNVTSTTASIADTSGTSPP--ISSTTSQTPYTTSPFTLSS 11209 Query: 100 TQNVYSVP---GSQYLYNQPS----CY 119 + Y +P G Y P CY Sbjct: 11210 SSFEYPLPHYSGDSSYYPPPDHHSVCY 11290 Database: genome.fa Posted date: Jan 16, 2009 12:50 PM Number of letters in database: 32,967,507 Number of sequences in database: 799 Lambda K H 0.311 0.128 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,933,965 Number of Sequences: 799 Number of extensions: 238253 Number of successful extensions: 1165 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 63 Number of HSP's that attempted gapping in prelim test: 1052 Number of HSP's gapped (non-prelim): 276 length of query: 854 length of database: 10,989,169 effective HSP length: 109 effective length of query: 745 effective length of database: 10,902,078 effective search space: 8122048110 effective search space used: 8122048110 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 65 (29.6 bits)