TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) # Drosophila melanogaster # Complete (313 letters) Database: genome.fa 9 sequences; 8,347,606 total letters Searching.........done Score E Sequences producing significant alignments: (bits) Value gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 ch... 30 0.48 gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ct... 28 1.8 gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ct... 27 5.3 gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 ch... 27 6.9 gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ct... 26 9.0 >gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 chr2_complete, whole genome shotgun sequence Length = 1971884 Score = 30.4 bits (67), Expect = 0.48 Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 7/139 (5%) Frame = +1 Query: 176 KELSTQLLRDLDRFQKRAFAKNEIKARAHPRLVLGVREALARLRINKVKLLFLATDCEIC 235 KE + +LL+D + A E+ + L G+ + K KL+ +A D + Sbjct: 183757 KEKAARLLKDAELAASGA----EVATKKPFMLKSGLNHVTNLVEYKKAKLVVIAHDVD-- 183918 Query: 236 PGESGLDATIEGLKFQCQQQQVPYCFPLLRRELSYAL-QKRAQICCVAIL------DFDG 288 P E L L C++++VPYC + L + QK A + V + +FD Sbjct: 183919 PIELVL-----WLPALCRKKEVPYCIIKSKSRLGKLVHQKTASVVAVDNVRKEDQAEFDN 184083 Query: 289 ANATYADLLNEIEDARAEY 307 T+ + NE + R + Sbjct: 184084 LVRTFTAMFNENSELRKRW 184140 Score = 26.2 bits (56), Expect = 9.0 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +2 Query: 48 RPKTQRQTKAHKLQKTHLAI 67 RPK R T+ KL+KTH +I Sbjct: 1223981 RPKPSRPTQREKLRKTHSSI 1224040 Score = 26.2 bits (56), Expect = 9.0 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Frame = +3 Query: 19 KITPRSSKYKNQHR-KREQQTSLLDFVIKPR----PKTQRQTKAHKLQKTHLAITRGSYI 73 +I P+ K H +E Q +L+F + P Q+ T+A Q +L + I Sbjct: 1918971 QICPKQGKCSQSHL*VKEHQQEILNFHTQTS**GLPSCQQFTRA*GSQTLYLQ*DTSAVI 1919150 Query: 74 VYKPKGKTRLDP 85 + +GK LDP Sbjct: 1919151 FIRNRGKQSLDP 1919186 >gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ctg_530, whole genome shotgun sequence Length = 1317241 Score = 28.5 bits (62), Expect = 1.8 Identities = 16/58 (27%), Positives = 30/58 (51%) Frame = -2 Query: 6 RRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKT 63 RRSR+++ + + + R SK +HR R++++ D + R +T R+ K T Sbjct: 605166 RRSRSRERKRSRSRSRERRSKRDRRHRSRDRRSRSRDRRSRSRDRTTREKDKSKNTNT 604993 Score = 26.6 bits (57), Expect = 6.9 Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 14/175 (8%) Frame = -1 Query: 12 DVQDTAIKITPRSSKYKNQHRKREQQTSLL---------DFVIKPRPKTQRQTKAHKL-- 60 D D + +T + K KN+ K +QQ + D V + + K+ + Sbjct: 358339 DTVDRDVGLTGQYRKAKNKKSKVKQQGTSASGNISSVSQDTVNRDNTADSSKVKSEGIYP 358160 Query: 61 QKTHLAITRGSYIVYKPKGKTRLDPKK---KITRLKKSVRVYRTSKKAEREVAENDLEGV 117 Q T I RG KG ++ K K + K + + +K E +V + D + + Sbjct: 358159 QLTQKCINRG-------KGSASVNTSKYKLKQNEINKPKQNHEINKLREGDVNKVDEDDM 358001 Query: 118 PVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTR 172 I+ +Q NLS + P P+N + K ++ RF + C + R Sbjct: 358000 KEGDYTISTQR---DQTEVNLSDFQDPTPSNEDEEKQKLNLNIYRFINNCVSVNR 357845 >gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ctg_529, whole genome shotgun sequence Length = 1835834 Score = 26.9 bits (58), Expect = 5.3 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 13/118 (11%) Frame = -1 Query: 27 YKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPK 86 YKN RK+ + LL FV Q + +++ L I R I+ K K LD + Sbjct: 677966 YKNF*RKKRK---LLKFVEPGTYIKQERQLLRQMEDKALGINRSRLIIQK---KRLLDQQ 677805 Query: 87 KKITRLKKSVRVYRTSKKAE-------------REVAENDLEGVPVVGQDINPNAIPL 131 + +++ + + + +E+ + E V QD+NPN IPL Sbjct: 677804 NQRLNAMYNLQNSKDDQDKDEDEQNEPDVADETKEINHTESESNEVNFQDLNPNLIPL 677631 >gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 chr1_complete, whole genome shotgun sequence Length = 2540030 Score = 26.6 bits (57), Expect = 6.9 Identities = 17/61 (27%), Positives = 27/61 (44%) Frame = +2 Query: 47 PRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAE 106 P P T+ T+ + +K L I G KPK + + KIT K + T++ + Sbjct: 800966 PLPTTKTNTRLFERRKYRLKIRAGGQFRIKPKTNHSVAKRFKITATGKLMYRRATTQHKQ 801145 Query: 107 R 107 R Sbjct: 801146 R 801148 >gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ctg_531, whole genome shotgun sequence Length = 570487 Score = 26.2 bits (56), Expect = 9.0 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -3 Query: 136 QNLSLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNC 170 Q+LS+ P+PN + ++IHS + Y NC Sbjct: 424622 QSLSIYPLPSPNTFPYSPYHYSIHSFPLQHYLPNC 424518 Database: genome.fa Posted date: Jan 19, 2010 5:27 PM Number of letters in database: 8,347,606 Number of sequences in database: 9 Lambda K H 0.319 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,360,313 Number of Sequences: 9 Number of extensions: 30552 Number of successful extensions: 178 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 129 Number of HSP's gapped (non-prelim): 107 length of query: 313 length of database: 2,782,535 effective HSP length: 91 effective length of query: 222 effective length of database: 2,781,716 effective search space: 617540952 effective search space used: 617540952 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (26.2 bits)