TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Drosophila melanogaster # Complete
         (313 letters)

Database: genome.fa 
           5578 sequences; 78,051,097 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQY01000810.1| Phytophthora sojae strain P6497 Psojae_Cont81...    64   3e-10
gb|AAQY01000370.1| Phytophthora sojae strain P6497 Psojae_Cont37...    32   1.1  
gb|AAQY01000255.1| Phytophthora sojae strain P6497 Psojae_Cont25...    32   1.1  
gb|AAQY01004293.1| Phytophthora sojae strain P6497 Psojae_Cont42...    31   2.4  
gb|AAQY01001585.1| Phytophthora sojae strain P6497 Psojae_Cont15...    31   3.1  
gb|AAQY01000178.1| Phytophthora sojae strain P6497 Psojae_Cont17...    30   4.1  
gb|AAQY01004299.1| Phytophthora sojae strain P6497 Psojae_Cont42...    30   5.3  
gb|AAQY01001363.1| Phytophthora sojae strain P6497 Psojae_Cont13...    30   5.3  
gb|AAQY01001140.1| Phytophthora sojae strain P6497 Psojae_Cont11...    30   5.3  
gb|AAQY01000715.1| Phytophthora sojae strain P6497 Psojae_Cont71...    30   5.3  
gb|AAQY01000712.1| Phytophthora sojae strain P6497 Psojae_Cont71...    30   5.3  
gb|AAQY01001353.1| Phytophthora sojae strain P6497 Psojae_Cont13...    29   9.1  
gb|AAQY01000381.1| Phytophthora sojae strain P6497 Psojae_Cont38...    29   9.1  

>gb|AAQY01000810.1| Phytophthora sojae strain P6497 Psojae_Cont810, whole genome shotgun
              sequence
          Length = 104728

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 38/111 (34%), Positives = 59/111 (53%)
 Frame = -1

Query: 190    QKRAFAKNEIKARAHPRLVLGVREALARLRINKVKLLFLATDCEICPGESGLDATIEGLK 249
              Q+RA + N  + +   RLVLG+ E    L   K++LL +ATD E C   +   A I  + 
Sbjct: 103912 QERAHSLNPKQDKRSRRLVLGLHEVRRGLLNKKIRLLVIATDLEGCEAVAQEIAEIVAI- 103736

Query: 250    FQCQQQQVPYCFPLLRRELSYALQKRAQICCVAILDFDGANATYADLLNEI 300
                  +Q+VP   P+ RR+L   LQK+ ++ CV +   DGAN  +  +L  +
Sbjct: 103735 --AAEQEVPMLSPMNRRKLGRTLQKKVRVSCVGVYSVDGANDLFQKILRSM 103589


>gb|AAQY01000370.1| Phytophthora sojae strain P6497 Psojae_Cont370, whole genome shotgun
             sequence
          Length = 138508

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 122   QDINPNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHSRRFRS 165
             Q + P A PL Q ++   ++  P P NPS   T H++   +  S
Sbjct: 97042 QQMQPAAAPLSQLLRTSRIAPPPTPPNPSAEHTAHSVDKNQSMS 97173


>gb|AAQY01000255.1| Phytophthora sojae strain P6497 Psojae_Cont255, whole genome shotgun
            sequence
          Length = 22552

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = -3

Query: 118  PVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHA----IHSRRFRSYCDNCTRP 173
            P  G   NP+A P +Q  Q L + + PAP  PS  +            R+ + C+ C + 
Sbjct: 2309 PGCGWTYNPSAHPWQQLQQYLLVLRPPAPRYPSLQEPTEGPADWTREDRYCTACERCVQR 2130

Query: 174  RLK 176
            +LK
Sbjct: 2129 QLK 2121


>gb|AAQY01004293.1| Phytophthora sojae strain P6497 Psojae_Cont4293, whole genome shotgun
            sequence
          Length = 2070

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
 Frame = -3

Query: 138  LSLSKTPAPNNPSQAKTVHAIHSRRFRS------YCDNCTRPRLKELSTQLLRDLD 187
            + LSKTP+P    + + + A   + +RS      Y   CTRP +  + TQL R L+
Sbjct: 1777 MKLSKTPSPTTQKEREEMQA---KSYRSLIGCLLYITTCTRPDVAYIVTQLSRFLE 1619


>gb|AAQY01001585.1| Phytophthora sojae strain P6497 Psojae_Cont1585, whole genome shotgun
             sequence
          Length = 233777

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -1

Query: 138   LSLSKTPAPNNPSQAKTVHAIHSRRFRS---YCDNCTRPRLKELSTQLLRDLD 187
             + LSKTP+P    + + + A   R       Y   CTRP +  + TQL R L+
Sbjct: 85838 MKLSKTPSPTTQKEREEMQAKSYRALIGCLLYITTCTRPDVAYIVTQLSRFLE 85680


>gb|AAQY01000178.1| Phytophthora sojae strain P6497 Psojae_Cont178, whole genome shotgun
            sequence
          Length = 110386

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = -2

Query: 22   PRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKT 63
            P+S K K +H+K++++ +  +   KP+ K  ++ K HK +KT
Sbjct: 7434 PKSKKDKKKHKKQKREEA-AEEEEKPKEKKDKKDKKHKKKKT 7312


>gb|AAQY01004299.1| Phytophthora sojae strain P6497 Psojae_Cont4299, whole genome shotgun
            sequence
          Length = 5137

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
 Frame = +2

Query: 48   RPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAE- 106
            +PKT   TKA K   T  ++ +G   + +P G     P +++  + + +   +  K A  
Sbjct: 4583 KPKTSEVTKAVKKVLTAASMLQGLGGILQPVGPAAF-PAERVNAILQVLEQQKRRKLAPV 4759

Query: 107  ---REVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPSQAKT 154
                E      E + +  ++++   + LEQ+ +     +TPAP +P+++ T
Sbjct: 4760 VQWDEATRRTNEMLAMWAEEVHM-LVHLEQESRKPQKPQTPAPASPAKSTT 4909


>gb|AAQY01001363.1| Phytophthora sojae strain P6497 Psojae_Cont1363, whole genome shotgun
              sequence
          Length = 127617

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
 Frame = -2

Query: 127    NAIPLEQQ-VQNLSLSKTPAPNNPSQAKTVHAIHSRRFRS------YCDNCTRPRLKELS 179
              NA P++      L L+KT +P    +      I SR +RS      Y   CTRP +  + 
Sbjct: 119774 NAKPVDNPCTSGLKLTKTQSPGTDEERTE---IKSRPYRSLIGCLLYITTCTRPDIAYVV 119604

Query: 180    TQLLRDLD 187
              TQL R L+
Sbjct: 119603 TQLSRFLE 119580


>gb|AAQY01001140.1| Phytophthora sojae strain P6497 Psojae_Cont1140, whole genome shotgun
              sequence
          Length = 266696

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +1

Query: 138    LSLSKTPAPNNPSQAKTVHAIHSRRFRS---YCDNCTRPRLKELSTQLLRDLD 187
              L LSKT +P    + + + A+  R       Y   CTRP +  + TQL R L+
Sbjct: 105397 LKLSKTQSPTTQKEREEMQAMTYRALIGRLLYITTCTRPDVAYIMTQLSRFLE 105555


>gb|AAQY01000715.1| Phytophthora sojae strain P6497 Psojae_Cont715, whole genome
           shotgun sequence
          Length = 5006

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
 Frame = -3

Query: 48  RPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAE- 106
           +PKT   TKA K   T  ++ +G   + +P G     P +++  + + +   +  K A  
Sbjct: 984 KPKTSEVTKAVKKVLTAASMLQGLGGILQPVGPAAF-PAERVNAILQVLEQQKRRKLAPV 808

Query: 107 ---REVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPSQAKT 154
               E      E + +  ++++   + LEQ+ +     +TPAP +P+++ T
Sbjct: 807 VQWDEATRRTNEMLAMWAEEVHM-LVHLEQESRKPQKPQTPAPASPAKSTT 658


>gb|AAQY01000712.1| Phytophthora sojae strain P6497 Psojae_Cont712, whole genome shotgun
              sequence
          Length = 160322

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
 Frame = +2

Query: 48     RPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAE- 106
              +PKT   TKA K   T  ++ +G   + +P G     P +++  + + +   +  K A  
Sbjct: 153503 KPKTSEVTKAVKKVLTAASMLQGLGGILQPVGPAAF-PAERVNAILQVLEQQKRRKLAPV 153679

Query: 107    ---REVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPSQAKT 154
                  E      E + +  ++++   + LEQ+ +     +TPAP +P+++ T
Sbjct: 153680 VQWDEATRRTNEMLAMWAEEVHM-LVHLEQESRKPQKPQTPAPASPAKSTT 153829


>gb|AAQY01001353.1| Phytophthora sojae strain P6497 Psojae_Cont1353, whole genome shotgun
             sequence
          Length = 54019

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +3

Query: 132   EQQVQNLSLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRP 173
             E Q QNL   K   P   S   T H +H RR  +    C RP
Sbjct: 49026 EHQNQNLRTPKNGTP--ASMQVTAHLLHVRRVAACASQCVRP 49145


>gb|AAQY01000381.1| Phytophthora sojae strain P6497 Psojae_Cont381, whole genome shotgun
             sequence
          Length = 36355

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = +2

Query: 207   LVLGVREALARLRINKVKLLFLATDCEICPGESGLDATIEGLKFQCQQQQVPYCFPLL 264
             L LGVR+    +R            CE     S   AT   L+F C+ QQ   C PL+
Sbjct: 20513 LTLGVRKVYGLVRSGTGTGYLKLRLCESVTSSSDAKATAAPLQFWCRGQQTRSCPPLI 20686


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:09 PM
  Number of letters in database: 78,051,097
  Number of sequences in database:  5578
  
Lambda     K      H
   0.319    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,793,599
Number of Sequences: 5578
Number of extensions: 419851
Number of successful extensions: 2856
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 202
Number of HSP's that attempted gapping in prelim test: 1631
Number of HSP's gapped (non-prelim): 1882
length of query: 313
length of database: 26,017,032
effective HSP length: 106
effective length of query: 207
effective length of database: 25,425,764
effective search space: 5263133148
effective search space used: 5263133148
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)