TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Drosophila melanogaster # Complete
         (313 letters)

Database: genome.fa 
           218 sequences; 41,633,360 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_38                                                            33   4e-05
scaffold_11                                                            32   1.0  
scaffold_35                                                            31   1.7  
scaffold_18                                                            31   1.7  
scaffold_10                                                            30   3.9  
scaffold_39                                                            28   8.6  
scaffold_13                                                            28   8.6  
scaffold_8                                                             28   8.6  

>scaffold_38 
          Length = 375890

 Score = 32.7 bits (73), Expect(2) = 4e-05
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = -2

Query: 199    IKARAHPRLVLGVREALARLRINKVKLLFLATD 231
              ++A+A  RLVLG  E   +L + KVKLL +A D
Sbjct: 123049 MQAKARRRLVLGANECHRKLALGKVKLLLVAPD 122951



 Score = 32.3 bits (72), Expect(2) = 4e-05
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 166    YCDNCTRPRLKELSTQLLRDLDRFQKRAFAKN 197
              YCD+   P + E   QLL+D  RF  RA  KN
Sbjct: 123242 YCDHALDPEVDETVKQLLKDSMRFYNRAVEKN 123147


>scaffold_11 
          Length = 1136692

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 25/78 (32%), Positives = 39/78 (50%)
 Frame = +2

Query: 20     ITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKG 79
              +TP + ++KN  +KR+QQ     +    + K     K  K +KT  + T      + PK 
Sbjct: 208190 LTPTAHQHKNIKKKRKQQQQQRTWQTS-KLKISAANKRTKNKKTKTSSTDMDRGTFGPKD 208366

Query: 80     KTRLDPKKKITRLKKSVR 97
              KTR + KK+  + KKS R
Sbjct: 208367 KTRDEGKKE--KRKKSRR 208414


>scaffold_35 
          Length = 432256

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 7      RSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTK 56
              RS + D   T   + P +S ++    +R+    + DF+ KP P T  QT+
Sbjct: 194237 RSADDDDATTNGPLDPHTSPWRGYAARRDANLDMDDFLAKPSPPTPDQTR 194088


>scaffold_18 
          Length = 855359

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -1

Query: 47     PRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKA 105
              P P T  Q++ HK  KTH A  R  +  Y+ + + R  P ++  R ++  R  +  +K+
Sbjct: 827363 PVPSTSNQSRTHKQSKTHQAARRCRH-RYRDRCQKRATPTRRRRRRRRRRRRSQRERKS 827190


>scaffold_10 
          Length = 1258938

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
 Frame = +3

Query: 129    IPLEQQVQNLSLS-----KTPAPNNPSQAKTVHAIHSRRFRSYCDNCT 171
              I L +++ N+ L+     K+   +N +QAK++HA+H    R  C +CT
Sbjct: 470514 ICLVEKINNMDLNHQS*PKSSTHSNETQAKSIHALH----RETCCSCT 470645


>scaffold_39 
          Length = 348207

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 19/80 (23%), Positives = 39/80 (48%)
 Frame = +3

Query: 86     KKKITRLKKSVRVYRTSKKAEREVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPA 145
              +++  RLK  VR  R++   +    ++ L+G  +  +   P   P E Q+        P 
Sbjct: 287115 RQEAVRLKPVVRADRSTMHRQTPRRQSRLQG*RLQ-ETPTPERAPRESQLP----CHFPQ 287279

Query: 146    PNNPSQAKTVHAIHSRRFRS 165
              P +P + +  HA+H+++ R+
Sbjct: 287280 PMSPRRHRETHALHAKKSRA 287339


>scaffold_13 
          Length = 1102880

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +3

Query: 126    PNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHSR----RFRSYCDNCTRPRLK 176
              PN+ P E          T  P+N   +++V+  H+R    RFR YCD+  R + K
Sbjct: 471081 PNSTPKELA------GVTYPPSNQKGSRSVNDTHNRGTKNRFRCYCDSIARHQKK 471227


>scaffold_8 
          Length = 1300515

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
 Frame = +2

Query: 20     ITPRSSKYKNQ---HRKR---EQQTSLLDFVIK---PRPKTQRQTKA---HKLQKTHLAI 67
              + PR   YK     HR R   EQQT      +K   P P+T+R+TKA   HK ++ H   
Sbjct: 331283 VPPRFRMYKRSICSHRLRKLWEQQTRTHHG*VKSEKPNPRTRRKTKAKVKHKSKQAHCQA 331462

Query: 68     T 68
              T
Sbjct: 331463 T 331465


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:06 PM
  Number of letters in database: 41,633,360
  Number of sequences in database:  218
  
Lambda     K      H
   0.319    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,465,673
Number of Sequences: 218
Number of extensions: 248040
Number of successful extensions: 1773
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1518
Number of HSP's gapped (non-prelim): 764
length of query: 313
length of database: 13,877,786
effective HSP length: 102
effective length of query: 211
effective length of database: 13,855,550
effective search space: 2923521050
effective search space used: 2923521050
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)