TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) # Drosophila melanogaster # Complete (313 letters) Database: genome.fa 1696 sequences; 31,706,682 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value mex235c15.p1k 33 0.35 mex321b10.p1k 30 2.2 mex220h11.p1k 29 3.8 mex214e20.q1k 28 6.5 1036_mexFOS1_31j04.p1kpIBF 28 6.5 mex121o16.q1k 28 8.5 mex137k23.p1k 28 8.5 mex50h17.p1k 28 8.5 mex373l18.q1k 28 8.5 mex115a10.p1k 28 8.5 >mex235c15.p1k Length = 42294 Score = 32.7 bits (73), Expect = 0.35 Identities = 20/68 (29%), Positives = 30/68 (44%) Frame = -3 Query: 118 PVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRPRLKE 177 P + NP+A + + LS P P +P + V RR R + +C R +K Sbjct: 18925 PESSRSTNPSAAQVRSMTAQMHLS--PPPLHPQPTRVVTRRR*RRQRDHRSSCRRSHMKR 18752 Query: 178 LSTQLLRD 185 LS Q +D Sbjct: 18751 LSRQAGQD 18728 >mex321b10.p1k Length = 90993 Score = 30.0 bits (66), Expect = 2.2 Identities = 17/60 (28%), Positives = 28/60 (46%) Frame = +1 Query: 116 GVPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRPRL 175 G VVG + P E + + + P+P +PS A+ V +H + R +C +P L Sbjct: 52462 GASVVGSAVGRTRQPAEHEAALEAQRQAPSPRHPSAAQ-VSRLHQKHTRVQRLSCEQPHL 52638 >mex220h11.p1k Length = 25731 Score = 29.3 bits (64), Expect = 3.8 Identities = 23/67 (34%), Positives = 32/67 (47%) Frame = +1 Query: 136 QNLSLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKRAFA 195 +N S+S+TP P+ A H RR R C RP ++ +LLRD R Q+R Sbjct: 15733 KNRSMSRTP----PAAASPSHHRSRRRPRL----CDRPCVQASRRRLLRDGPRLQRRGRR 15888 Query: 196 KNEIKAR 202 E +R Sbjct: 15889 GGERTSR 15909 >mex214e20.q1k Length = 11036 Score = 28.5 bits (62), Expect = 6.5 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Frame = +1 Query: 20 ITPRSSKYKNQHRKREQQT--SLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKP 77 ITPR + ++ EQQ L F +P+P + R AH+ A + +V KP Sbjct: 5167 ITPRWPL*HHPTQRSEQQPLRCRLPFTTRPQPPSLRV--AHRRSSMWPAAIPAATVVTKP 5340 Query: 78 KGKTRL 83 G TRL Sbjct: 5341 SGATRL 5358 >1036_mexFOS1_31j04.p1kpIBF Length = 182378 Score = 28.5 bits (62), Expect = 6.5 Identities = 44/211 (20%), Positives = 82/211 (38%), Gaps = 1/211 (0%) Frame = +2 Query: 3 EKIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQK 62 E+ RR R +V ++ + + K H +R +D R R H+ + Sbjct: 38951 ERDRRKRRHEVPQHHNEVADQRRQAKTAHDRRRVVHHSVDASQLQRASHHR---THQQAR 39121 Query: 63 THLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLEGVPVVGQ 122 H + + +V + +LDP I + R + K +R+ AE E + Sbjct: 39122 DHFDV---AVLV-----RVQLDPALLIVAAELRPRFAHHNPKQDRQQAEQGRERAQALHA 39277 Query: 123 DINPNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRPRLKEL-STQ 181 + + + + +++ L+ KT N + H H + + R++ L S Sbjct: 39278 R-HHHLVLVAVKIRALAKCKTNRRRNEDAQRREHLEH------HTNRALPLRVRVLVSVH 39436 Query: 182 LLRDLDRFQKRAFAKNEIKARAHPRLVLGVR 212 R+ D ++A +E HP+LVLG R Sbjct: 39437 RTRNTDHAHEQA--DHEAADNQHPKLVLGGR 39523 >mex121o16.q1k Length = 162664 Score = 28.1 bits (61), Expect = 8.5 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Frame = +2 Query: 117 VPVVGQDINPNAIPLEQQVQNLSLSKTP----APNNPSQAKTVHAIHSRRFRSYCDNCTR 172 +PVV D +P E + + LSK A K+V+A+ S R R CDN R Sbjct: 39722 LPVVRGDETGEGVPCESESSQIPLSKLSQKVLASCITRLTKSVNAVKSARSRP-CDNALR 39898 Query: 173 PRL 175 R+ Sbjct: 39899 IRM 39907 >mex137k23.p1k Length = 58782 Score = 28.1 bits (61), Expect = 8.5 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Frame = -3 Query: 126 PNAIPLEQQVQNLSLSKTPAPN--NPSQAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLL 183 P LE Q+++ L K+ A + S AK + RR+ Y R E + Sbjct: 36190 PEVRSLESQLKDAYLRKSRAEQVTDRSAAKALEVEEQRRYMEYLAEQDRLAKAEEEKKHK 36011 Query: 184 RDLDRFQKRAFAKNEI 199 D++RF++ A+ EI Sbjct: 36010 ADMERFRRHQAAQLEI 35963 >mex50h17.p1k Length = 18694 Score = 28.1 bits (61), Expect = 8.5 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +2 Query: 139 SLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRPRLK 176 S+ TP P P+ K + A +R +R + + C RPRL+ Sbjct: 17663 SVKNTPPPP-PTNKKILTANTNRLYRRHRERCQRPRLR 17773 >mex373l18.q1k Length = 29646 Score = 28.1 bits (61), Expect = 8.5 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = -3 Query: 141 SKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRP 173 +++ +P PS +KTV+ + RR+ + TRP Sbjct: 10528 ARSVSPMTPSGSKTVYLVLGRRYTAAAQTATRP 10430 >mex115a10.p1k Length = 48133 Score = 28.1 bits (61), Expect = 8.5 Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 3/95 (3%) Frame = -3 Query: 6 RRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRP---KTQRQTKAHKLQK 62 RR + QD + P ++ + + T +LDF + P +T+R + K ++ Sbjct: 40475 RRRQR*STQDDMVSSPPTTTARMVRRARATMTTQMLDFALACWPEVTRTRRNSSKQKTRR 40296 Query: 63 THLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVR 97 + G++ P + + + + RL+ R Sbjct: 40295 ARKSCAHGTWSSVTPPCEAQSVSPQTVCRLRPPTR 40191 Database: genome.fa Posted date: Jan 16, 2009 12:51 PM Number of letters in database: 31,706,682 Number of sequences in database: 1696 Lambda K H 0.319 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,184,182 Number of Sequences: 1696 Number of extensions: 199505 Number of successful extensions: 1524 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 291 Number of HSP's successfully gapped in prelim test: 98 Number of HSP's that attempted gapping in prelim test: 1069 Number of HSP's gapped (non-prelim): 762 length of query: 313 length of database: 10,568,894 effective HSP length: 100 effective length of query: 213 effective length of database: 10,399,294 effective search space: 2215049622 effective search space used: 2215049622 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (28.1 bits)