TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) # Drosophila melanogaster # Complete (313 letters) Database: genome.fa 2172 sequences; 20,771,095 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAFB02000121.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 34 0.078 gb|AAFB02000362.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 33 0.17 gb|AAFB02000021.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 32 0.39 gb|AAFB02000053.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 31 0.66 gb|AAFB02000460.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 28 4.3 gb|AAFB02000444.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 28 4.3 gb|AAFB02000282.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 28 5.6 gb|AAFB02000041.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 28 5.6 gb|AAFB02000316.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 28 7.3 gb|AAFB02000108.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 28 7.3 gb|AAFB02000584.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 27 9.5 gb|AAFB02000150.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 27 9.5 gb|AAFB02000002.1| Entamoeba histolytica HM-1:IMSS gcontig_11047... 27 9.5 >gb|AAFB02000121.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750508022, whole genome shotgun sequence Length = 40487 Score = 34.3 bits (77), Expect = 0.078 Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 3/116 (2%) Frame = +2 Query: 7 RSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLA 66 + RN+ I T +KN+ +K+ + L F K R K +++ K +K ++ Sbjct: 27734 KQRNESKNARIINNTENKENHKNKTKKKVIKKKLPHFKTKTR-K*KKRLKNNK*RRR--K 27904 Query: 67 ITRGSYIVYKPKGKTRLDPKKKITRL---KKSVRVYRTSKKAEREVAENDLEGVPV 119 + + S I K KT L+ KK+I R K+++ +Y + ERE ++E + + Sbjct: 27905 VNKSSQIK**KKHKT*LENKKRIKRKYK*KETIYLY*KEENTERESKIKEIERINI 28072 >gb|AAFB02000362.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750514585, whole genome shotgun sequence Length = 16311 Score = 33.1 bits (74), Expect = 0.17 Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 1/127 (0%) Frame = +2 Query: 176 KELSTQLLRDLDRFQKRAFAKNEIKARAHPRLVLGVREALARLRINKVKLLFLATDCEIC 235 KEL +L+ + + Q+ F K G EA L K ++ +A D + Sbjct: 5744 KELQNKLIEFVQQAQQNGFVKK------------GANEATKALNRGKADIVIIAADTK-- 5881 Query: 236 PGESGLDATIEGLKFQCQQQQVPYCFPLLRRELSYALQKRAQICCVAILDFDGANATYAD 295 P E L L C+ + VPY F + L A + VAI++ G +A + Sbjct: 5882 PIEIVLH-----LPILCEDKNVPYVFVGSKAALGRACGVSRDVIAVAIINDKGKSAPSVE 6046 Query: 296 LL-NEIE 301 + +EIE Sbjct: 6047 TMKDEIE 6067 >gb|AAFB02000021.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750513524, whole genome shotgun sequence Length = 81723 Score = 32.0 bits (71), Expect = 0.39 Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 1/127 (0%) Frame = -1 Query: 176 KELSTQLLRDLDRFQKRAFAKNEIKARAHPRLVLGVREALARLRINKVKLLFLATDCEIC 235 KEL +L+ + + Q+ F K G E L K ++ +A D + Sbjct: 61494 KELQNKLIEFVQQAQQNGFVKK------------GANETTKALNRGKADIVIMAADTQ-- 61357 Query: 236 PGESGLDATIEGLKFQCQQQQVPYCFPLLRRELSYALQKRAQICCVAILDFDGANATYAD 295 P E L L C+ + VPY F + L A + VAI++ G +A + Sbjct: 61356 PIEIVLH-----LPILCEDKNVPYVFVGSKAALGRACGVSRDVIAVAIINDKGKSAPSVE 61192 Query: 296 LL-NEIE 301 + +EIE Sbjct: 61191 TMKDEIE 61171 >gb|AAFB02000053.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750508094, whole genome shotgun sequence Length = 56913 Score = 31.2 bits (69), Expect = 0.66 Identities = 29/112 (25%), Positives = 42/112 (37%) Frame = +1 Query: 4 KIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKT 63 K+ + +D +D K K K+ H K E Q IK K + + +A K + Sbjct: 33202 KVTKHDKKDDKDKEEKKKEEKKKDKSHHEKEESQK------IKEEAKKKAEEEAKKKAEE 33363 Query: 64 HLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLE 115 A + + K K + KKK K KKAE E A+ E Sbjct: 33364 EEAKKKAEE---EAKKKAEEEAKKKAEEEAKKKAEEEAKKKAEEEEAKKKAE 33510 >gb|AAFB02000460.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750506295, whole genome shotgun sequence Length = 11975 Score = 28.5 bits (62), Expect = 4.3 Identities = 29/120 (24%), Positives = 50/120 (41%) Frame = +1 Query: 28 KNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKK 87 KNQHR+ QQ V K + K HK QK + I + K + +K Sbjct: 9178 KNQHRQHNQQNKQYLQVNK------QYQKKHKKQKDQMLIQQQEKNNQKTSPQKNHKTQK 9339 Query: 88 KITRLKKSVRVYRTSKKAEREVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPAPN 147 K + K+ + + +A ++ ++ +D NP++ E Q Q+ S+T P+ Sbjct: 9340 KQHQQKQQNNKQKANSQAHQKHHNQKIQ-TKQQQKDHNPSSQGEEIQKQDKKQSETQTPS 9516 >gb|AAFB02000444.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750506405, whole genome shotgun sequence Length = 12599 Score = 28.5 bits (62), Expect = 4.3 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 12/100 (12%) Frame = -1 Query: 26 KYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLD- 84 +YKN + + + K R K + +TK +K ++ TRG K KG+ + Sbjct: 1406 RYKNTRGRYKSKKK------KERNKKKNKTKRYKSKRRRYKNTRGR*KSKKKKGRDKRKK 1245 Query: 85 ---------PKKKITRLKK-SVRVYRTSKK-AEREVAEND 113 KKK+ LKK VR+ R KK E++ E D Sbjct: 1244 KKKKDYKK*TKKKMQGLKKLRVRLKRNKKKEKEKKKKEKD 1125 >gb|AAFB02000282.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750504831, whole genome shotgun sequence Length = 21145 Score = 28.1 bits (61), Expect = 5.6 Identities = 37/141 (26%), Positives = 66/141 (46%) Frame = +2 Query: 1 MTEKIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKL 60 MT K++ ++NQ +Q +K R + K + RKR+++ + R K + Q KA K Sbjct: 7253 MTIKVK-NQNQLLQIQKMK---RKKRLKRK*RKRKKKKKRKNEKT*-RKKRKLQQKAKKK 7417 Query: 61 QKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLEGVPVV 120 +K L K K R+ KKK + KK ++ K +++ E + + + Sbjct: 7418 RKRKLK-----------KMKMRM*MKKKS*KEKKPQKLKVVKKAMKKKNQEKVINELKLY 7564 Query: 121 GQDINPNAIPLEQQVQNLSLS 141 QD+ N I L ++++ L S Sbjct: 7565 YQDLMLNMIHLLKKLKPLHFS 7627 >gb|AAFB02000041.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750513118, whole genome shotgun sequence Length = 69287 Score = 28.1 bits (61), Expect = 5.6 Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 8/120 (6%) Frame = +2 Query: 4 KIRRSRNQDVQDTAIK-ITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQK 62 +++ S D+ + ++ ++ + + + + E+Q + I R + +RQ K + Q+ Sbjct: 68186 QMKASATTDIHELLVQQVSKKQEEDEKEEELEEKQRKQKE--IAEREEAERQKKLQEQQQ 68359 Query: 63 THLA-ITRGSYIVYKPKGKTRLDPKKKITR------LKKSVRVYRTSKKAEREVAENDLE 115 A + + K KGK D KKK T+ +K+VR KK + +DL+ Sbjct: 68360 IREADMFAAASSSVKIKGKKEKDTKKKFTQEDLDKACEKAVREALKMKKEKYHKIRDDLQ 68539 >gb|AAFB02000316.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750514739, whole genome shotgun sequence Length = 18616 Score = 27.7 bits (60), Expect = 7.3 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Frame = +2 Query: 28 KNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLA--ITRGSYIVYKPKGKTRLDP 85 KN ++++ +K + K + Q+K +K L + + +K K K + Sbjct: 4862 KNLRKEQKDGKKKTSKRLKQKSKVEIQSKNYKKDVKWLK**MKQKKKEKHKKKTKKKQRM 5041 Query: 86 KKKITRLKKSVRVYRTSKKAEREVAEN 112 KKKI + KK ++ Y+T K ++ +N Sbjct: 5042 KKKIIKKKKKLKCYKTRLKD*KKKLKN 5122 >gb|AAFB02000108.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750513528, whole genome shotgun sequence Length = 42500 Score = 27.7 bits (60), Expect = 7.3 Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 2/105 (1%) Frame = +1 Query: 6 RRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHL 65 RR R + + K R K + + + ++Q+ L KP+ K ++ K + +K Sbjct: 1963 RRQRKKQKRKPEKKQKRRLEKKQKKKQDKKQRRKL---D*KPKRKQDKKQKRRQRKKQRK 2133 Query: 66 AITRGSYIVYKPKGKTRLD--PKKKITRLKKSVRVYRTSKKAERE 108 + + K K +LD PK+K+ + +K + + KK +++ Sbjct: 2134 KLDKKQKRRQDKKPKRKLD*KPKRKLDKKQKKKQDKKQKKKQDKK 2268 Score = 27.7 bits (60), Expect = 7.3 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Frame = +1 Query: 22 PRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAH--KLQKTHLAITRGSYIVYKPKG 79 P+ + K Q +K E+ KP+ K ++ K K K L + KPK Sbjct: 2461 PKRKQDKKQRKKLEK---------KPKRKQDKKPKRKQDKKPKRKLEKKPKRKLEKKPKR 2613 Query: 80 KTRLDPKKKITRLKKSVRVYRTSKKAERE 108 K PK+K+ + K R KK E++ Sbjct: 2614 KLEKKPKRKLEKKPKRKLDRRQRKKPEKK 2700 >gb|AAFB02000584.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750505767, whole genome shotgun sequence Length = 8361 Score = 27.3 bits (59), Expect = 9.5 Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 22/216 (10%) Frame = +3 Query: 7 RSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLA 66 + +NQ + + K SSK K ++ L D K + QR+ K KLQ+ Sbjct: 3642 KKKNQITSEKS-KTASLSSKQKEPEEIETKKQELDDQAKKIEEEKQRKEKELKLQQEEEK 3818 Query: 67 ITRGSYIVYKPKGKTRLDPKKK--------ITRLKKSVRVYR--TSKKAEREVAENDL-- 114 R + + K + D + K + RL+++ R + KK E E E D+ Sbjct: 3819 KKREIEKTKQEEEKKKRDEEFKQQKEREENLKRLEENERKIKEEEKKKTEEEKKEKDVKE 3998 Query: 115 -EGVPVVGQDINPNAIPL-----EQQVQNLSLSKTPAPNNPSQAKTV---HAIHSRRFRS 165 + V ++ N N + E+Q++ ++SKT + + K + I R Sbjct: 3999 FKSKQVTIEEDNSNNKEITSQQEEEQIKQANISKTKNVSIKQEEKQIEEERQIEEERQIE 4178 Query: 166 YCDNCTRPRLKELSTQLLRDLDRF-QKRAFAKNEIK 200 L +L + ++ + F QK+ KN ++ Sbjct: 4179 EEKQTKEKELLQLEEKQKKEREEFEQKQLQEKNNLR 4286 >gb|AAFB02000150.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750507366, whole genome shotgun sequence Length = 35403 Score = 27.3 bits (59), Expect = 9.5 Identities = 9/31 (29%), Positives = 19/31 (61%) Frame = -3 Query: 28 KNQHRKREQQTSLLDFVIKPRPKTQRQTKAH 58 +N+H++++ ++ P PKT R+T +H Sbjct: 23974 QNEHQQKQSSQESMNIYSIPDPKTPRETSSH 23882 >gb|AAFB02000002.1| Entamoeba histolytica HM-1:IMSS gcontig_1104750508190, whole genome shotgun sequence Length = 170119 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +2 Query: 200 KARAHPRLVLGVREALARLRINKVKLLFLATDCE 233 +ARA L G+R+ L + K F+A DC+ Sbjct: 130769 QARAQNALTKGIRQCLKVIEAKKALYCFIAEDCD 130870 Database: genome.fa Posted date: Jan 19, 2010 5:04 PM Number of letters in database: 20,771,095 Number of sequences in database: 2172 Lambda K H 0.319 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,230,272 Number of Sequences: 2172 Number of extensions: 57864 Number of successful extensions: 364 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 35 Number of HSP's that attempted gapping in prelim test: 228 Number of HSP's gapped (non-prelim): 195 length of query: 313 length of database: 6,923,698 effective HSP length: 97 effective length of query: 216 effective length of database: 6,713,014 effective search space: 1450011024 effective search space used: 1450011024 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (27.3 bits)