TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) # Drosophila melanogaster # Complete (313 letters) Database: genome.fa 799 sequences; 32,967,507 total letters Searching.....................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_207 74 1e-13 scaffold_91 34 0.12 scaffold_25 31 1.1 scaffold_142 29 4.0 scaffold_420 29 5.2 scaffold_389 29 5.2 scaffold_438 28 6.8 scaffold_447 28 8.9 scaffold_133 28 8.9 scaffold_43 28 8.9 scaffold_2 28 8.9 >scaffold_207 Length = 55585 Score = 73.9 bits (180), Expect = 1e-13 Identities = 72/304 (23%), Positives = 133/304 (43%), Gaps = 28/304 (9%) Frame = -1 Query: 32 RKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITR 91 RK+ + S D+V + T +Q+++H+ + L + K + + K K TR Sbjct: 55516 RKKFDKISFEDYV---KDDTNKQSQSHQHTRDKLVKKQPLQSQKKKCFYVKTEKKIKPTR 55346 Query: 92 LKKSVRVYRTSKKA----------EREVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLS 141 LK+ + +Y + K++ E E ++ + P + + I N + Sbjct: 55345 LKRDIELYNSIKESYFKKENSTQLENEESKVETATTPPTKLLDDNSTIDNNNNSDNSNGD 55166 Query: 142 KTPAPNNPSQAKTVHAIHSRRFRSYCD----NCTRPRLKELSTQLL-------------R 184 N+ S + + + + D N T +KE Q+L R Sbjct: 55165 NNGDNNSNSNSNSNTNNDTENNNNSSDIITTNTTNVNIKEYINQILPNKEIDNTCKELIR 54986 Query: 185 DLDRFQKRAFAKNEIKARAHPRLVLGVREALARLRINKVKLLFLATDCEICPGESG-LDA 243 L FQ+++F N + R V G+RE L L ++K+ + ++++ E E+G L+ Sbjct: 54985 ILKGFQEKSFQNNNPN-KVKKRFVSGLREVLKLLEVDKISCVIISSNIE----ENGALNK 54821 Query: 244 TIEGLKFQCQQQQVPYCFPLLRRELSYALQKRAQICCVAILDFDGANATYADLLNEIEDA 303 +E + C+ ++V Y F L R L ++ K +I + ILD+DGAN Y L N+ + + Sbjct: 54820 LVEDIIRLCRSKKVLYTFALSSRSLGKSIGKTIKISVLGILDYDGANEIYQKLFNQTKQS 54641 Query: 304 RAEY 307 R E+ Sbjct: 54640 RDEF 54629 >scaffold_91 Length = 84280 Score = 34.3 bits (77), Expect = 0.12 Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 1/127 (0%) Frame = +3 Query: 29 NQHRKREQQTSLLDFVI-KPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKK 87 +Q R QQT LDF++ + R K +T +K T + IT S V K K TR Sbjct: 23625 SQRRNNAQQTFSLDFLLNEKRNKDGTRTFYNKDGTTAITITPSS--VTKKKNITRATDTP 23798 Query: 88 KITRLKKSVRVYRTSKKAEREVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPAPN 147 K T+++K +KK+E+ +P P+ +Q + TP P Sbjct: 23799 KKTQIRKK------TKKSEKTP---------------SPTQTPVPAPIQ----TPTPTPT 23903 Query: 148 NPSQAKT 154 P Q +T Sbjct: 23904 TPIQVQT 23924 >scaffold_25 Length = 142329 Score = 31.2 bits (69), Expect = 1.1 Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 1/105 (0%) Frame = -3 Query: 6 RRSRNQDVQDTAIKITPRSSKYKNQHRKRE-QQTSLLDFVIKPRPKTQRQTKAHKLQKTH 64 ++ + +D++ +K P+ + KN +K++ ++ S V+K + +++ K K +K Sbjct: 9340 KKQKRKDLKKNVLKKKPKKNSKKNVWKKKD*KKKSKKRNVLKKKNLKEKKHKKKKKKKN- 9164 Query: 65 LAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREV 109 ++ K K +L K K LKK + + K ERE+ Sbjct: 9163 --------VLKKKDYKRKLKKKLKKNVLKKKKQKSKKKK*KEREI 9053 >scaffold_142 Length = 71084 Score = 29.3 bits (64), Expect = 4.0 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = -3 Query: 26 KYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRL-- 83 K KNQ K+ + S L KP+ K Q K L+K + ++ KPK K +L Sbjct: 4212 KLKNQLLKKPKLKSQLLLSKKPKLKNQLSLKNQLLKKP----KSKNQLLKKPKSKNQLLK 4045 Query: 84 DPKKKITRLKK 94 PK K LKK Sbjct: 4044 KPKSKNQLLKK 4012 >scaffold_420 Length = 26275 Score = 28.9 bits (63), Expect = 5.2 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 5/84 (5%) Frame = -3 Query: 26 KYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGK----- 80 K K +KR Q L ++K K + HK++ + + K K K Sbjct: 5390 KKKKMKKKRRNQEMKLHLMMKTIYKVMKNITIHKIKVEMMKMRMMKRTKMKKKTKKKMMM 5211 Query: 81 TRLDPKKKITRLKKSVRVYRTSKK 104 T+ KKK + KK V+V KK Sbjct: 5210 TKKKMKKKKSMTKKLVKVQNGKKK 5139 >scaffold_389 Length = 30651 Score = 28.9 bits (63), Expect = 5.2 Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 10/171 (5%) Frame = +3 Query: 3 EKIRRSRNQDVQDTAIKITPRSSKYKNQHR-KREQQTSLLDFVIK--PRPKTQRQTKAHK 59 ++++ Q Q +K ++ KY+ HR K+ +Q L ++K R Q+Q + K Sbjct: 3231 QQLQLKHIQQNQKLQLKHIEQNQKYQKYHRQKQRKQIQKLQKLLKIQQRQHLQQQEQLQK 3410 Query: 60 LQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLEGVPV 119 LQ+ I +PK + P++ + ++ + E+ D++ +P+ Sbjct: 3411 LQQ---------IITQQPKQPEK--PQQTQQLQQPQIKNDPAPQIGIDEIKPKDID-LPL 3554 Query: 120 VG-------QDINPNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHSRRF 163 V Q P ++ LE ++ N + T +P P+ + T + S RF Sbjct: 3555 VNSNRWLDLQPTKPPSVSLEPKLLNNAPPST-SPQQPNNSSTPSSSSSYRF 3704 >scaffold_438 Length = 24508 Score = 28.5 bits (62), Expect = 6.8 Identities = 25/102 (24%), Positives = 46/102 (45%) Frame = +1 Query: 15 DTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIV 74 +T ++ + + ++RK E+Q D ++ K + + K K +T + + + Sbjct: 817 ETKRRLQKERKEKEKENRKIEKQKKK-DKRVRDNEKKKEKKKTEK--ETKIPLMPVTVPT 987 Query: 75 YKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLEG 116 KP+ T PK+ I K V + +K E E E +LEG Sbjct: 988 IKPRQFT---PKRSILDFFKKVEPLKKPQKVEEEEEEVNLEG 1104 >scaffold_447 Length = 23989 Score = 28.1 bits (61), Expect = 8.9 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Frame = -1 Query: 6 RRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTS-----LLDFVIKPRPKTQRQTKAHKL 60 R + N + +I I +KY + + K + +++FVI P P +Q H++ Sbjct: 16567 RNNNNNNKNHHSIIIPIIINKYSSNNNKHNCNNNKNHHFIVEFVISPHPFQLQQLPQHQI 16388 Query: 61 QKTHLAIT 68 +T + IT Sbjct: 16387 HQTIIIIT 16364 >scaffold_133 Length = 73470 Score = 28.1 bits (61), Expect = 8.9 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 2/91 (2%) Frame = +1 Query: 28 KNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKP--KGKTRLDP 85 KN+ RKR Q + K + K +R+ KL+K ++ K K K R Sbjct: 30820 KNKKRKRSYQMT------KKKRKKKRKVNQKKLEK----------VIRKKMKKRKKRKKK 30951 Query: 86 KKKITRLKKSVRVYRTSKKAEREVAENDLEG 116 KKK+ R+ ++ KK ++ +EG Sbjct: 30952 KKKVKRIMMMKKMQYQKKKKRKDHQRVQIEG 31044 >scaffold_43 Length = 119887 Score = 28.1 bits (61), Expect = 8.9 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 1/104 (0%) Frame = -2 Query: 30 QHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKI 89 Q + +Q+ S I P P + L + + + + I K + K R++ +K+ Sbjct: 22989 QQPQLQQKKSQQPITIDPSPSQS----PNSLLISSIRDQKNNNINDKEREKERIEKEKER 22822 Query: 90 TRLKKSVRV-YRTSKKAEREVAENDLEGVPVVGQDINPNAIPLE 132 +L++ R K+ ERE E ++ I+PN IPL+ Sbjct: 22821 EKLERYERDRIENEKERERERIEREISEREQQQYQISPNRIPLK 22690 >scaffold_2 Length = 269154 Score = 28.1 bits (61), Expect = 8.9 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +3 Query: 64 HLAITRGSYIVYKPKGKTRLDPKKK 88 H+ + R YI+Y PK +PKKK Sbjct: 194664 HMTLGRSFYILYHPKNMVANNPKKK 194738 Database: genome.fa Posted date: Jan 16, 2009 12:50 PM Number of letters in database: 32,967,507 Number of sequences in database: 799 Lambda K H 0.319 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,979,163 Number of Sequences: 799 Number of extensions: 109953 Number of successful extensions: 794 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 56 Number of HSP's that attempted gapping in prelim test: 711 Number of HSP's gapped (non-prelim): 218 length of query: 313 length of database: 10,989,169 effective HSP length: 100 effective length of query: 213 effective length of database: 10,909,269 effective search space: 2323674297 effective search space used: 2323674297 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (28.1 bits)