TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|70879148|gb|EAN92345.1| hypothetical protein, conserved
[Trypanosoma cruzi]
         (386 letters)

Database: genome.fa 
           9 sequences; 8,347,606 total letters

Searching.........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 ch...    30   1.1  
gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ct...    28   3.1  
gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ct...    27   5.3  
gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 ch...    27   9.1  

>gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 chr2_complete, whole genome
               shotgun sequence
          Length = 1971884

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
 Frame = +3

Query: 6       VLLSGLPGAGKTTLSLAIQRL--------SEQVTTEGERSNSRHGGVVEAVLE 50
               + L+G+P +GKTT+S  ++ +         E +  E E SNS++  ++ + ++
Sbjct: 1383339 LFLAGMPASGKTTISYKLEEMFGFKHISAGECLREEMEDSNSQYSSLIRSYID 1383497


>gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ctg_530, whole genome shotgun
              sequence
          Length = 1317241

 Score = 28.1 bits (61), Expect = 3.1
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = -3

Query: 6      VLLSGLPGAGKTTLSLAIQR 25
              +LL+G PG+GKT +++AI +
Sbjct: 905615 ILLAGQPGSGKTAIAMAISK 905556



 Score = 27.3 bits (59), Expect = 5.3
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 7       LLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRHGGVVEAVLELDT 53
               LLSG PG GKTT +  + +       E   S+ R    +E +  L T
Sbjct: 1216174 LLSGPPGIGKTTCAKLVGQFFNYHVIELNASDQRSKNSIENIFPLVT 1216314


>gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ctg_529, whole genome shotgun
               sequence
          Length = 1835834

 Score = 27.3 bits (59), Expect = 5.3
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 34      GERSNSRHGGVVEAVLELDTFISSYEERDGTQRNGSNFSPEAWRRACD 81
               G R ++ HG +V+        IS+YE R  +  N S F+       CD
Sbjct: 1011459 GLRHSNSHGNIVDGTYGKYNAISTYESRFPSNENDSAFNSIVSVCTCD 1011316


>gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 chr1_complete, whole genome
               shotgun sequence
          Length = 2540030

 Score = 26.6 bits (57), Expect = 9.1
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -3

Query: 104     RNMSSTTTRFVFLVDTLPYRSMR---ASYWKLCRDLGKEQFQHKLE 146
               +N+ + T  +  L +   Y ++      YWK  RD+GK   Q K++
Sbjct: 2476332 KNLHNLTKCYTMLENVTKYYTVL*NVTRYWKTLRDIGKFMVQDKIK 2476195


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:27 PM
  Number of letters in database: 8,347,606
  Number of sequences in database:  9
  
Lambda     K      H
   0.319    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,042,471
Number of Sequences: 9
Number of extensions: 39592
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 126
length of query: 386
length of database: 2,782,535
effective HSP length: 93
effective length of query: 293
effective length of database: 2,781,698
effective search space: 815037514
effective search space used: 815037514
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)