TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|70879148|gb|EAN92345.1| hypothetical protein, conserved [Trypanosoma cruzi] (386 letters) Database: genome.fa 32,746 sequences; 89,612,356 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAHK01000442.1| Trypanosoma cruzi strain CL Brener tcruzi_104... 749 0.0 gb|AAHK01000470.1| Trypanosoma cruzi strain CL Brener tcruzi_104... 718 0.0 gb|AAHK01000054.1| Trypanosoma cruzi strain CL Brener tcruzi_104... 36 0.14 gb|AAHK01000255.1| Trypanosoma cruzi strain CL Brener tcruzi_104... 31 3.3 gb|AAHK01001644.1| Trypanosoma cruzi strain CL Brener tcruzi_104... 31 4.3 gb|AAHK01001286.1| Trypanosoma cruzi strain CL Brener tcruzi_104... 31 4.3 gb|AAHK01002164.1| Trypanosoma cruzi strain CL Brener tcruzi_104... 30 5.7 gb|AAHK01000841.1| Trypanosoma cruzi strain CL Brener tcruzi_104... 30 5.7 gb|AAHK01001212.1| Trypanosoma cruzi strain CL Brener tcruzi_104... 30 7.4 gb|AAHK01000017.1| Trypanosoma cruzi strain CL Brener tcruzi_104... 30 9.7 >gb|AAHK01000442.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053509799, whole genome shotgun sequence Length = 35447 Score = 749 bits (1934), Expect = 0.0 Identities = 368/368 (100%), Positives = 368/368 (100%) Frame = +2 Query: 1 MRICLVLLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRHGGVVEAVLELDTFISSYEE 60 MRICLVLLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRHGGVVEAVLELDTFISSYEE Sbjct: 16766 MRICLVLLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRHGGVVEAVLELDTFISSYEE 16945 Query: 61 RDGTQRNGSNFSPEAWRRACDEVREATFQRIRQCLLNPEKKRGRNMSSTTTRFVFLVDTL 120 RDGTQRNGSNFSPEAWRRACDEVREATFQRIRQCLLNPEKKRGRNMSSTTTRFVFLVDTL Sbjct: 16946 RDGTQRNGSNFSPEAWRRACDEVREATFQRIRQCLLNPEKKRGRNMSSTTTRFVFLVDTL 17125 Query: 121 PYRSMRASYWKLCRDLGKEQFQHKLERDGVMNKCDGRVPFDAVFVNMVEIRLNTPIEICL 180 PYRSMRASYWKLCRDLGKEQFQHKLERDGVMNKCDGRVPFDAVFVNMVEIRLNTPIEICL Sbjct: 17126 PYRSMRASYWKLCRDLGKEQFQHKLERDGVMNKCDGRVPFDAVFVNMVEIRLNTPIEICL 17305 Query: 181 ERNERRTETPQYVPPHVIKNMGGSFDVGVDTSAKFSADDNCWVVSPRQASTPWPVIWLEE 240 ERNERRTETPQYVPPHVIKNMGGSFDVGVDTSAKFSADDNCWVVSPRQASTPWPVIWLEE Sbjct: 17306 ERNERRTETPQYVPPHVIKNMGGSFDVGVDTSAKFSADDNCWVVSPRQASTPWPVIWLEE 17485 Query: 241 VKTNCCLPPAALAQKLLERLHSPEVMGELEKQSASFFEAEVKRRERERCDHDQPQEGDAA 300 VKTNCCLPPAALAQKLLERLHSPEVMGELEKQSASFFEAEVKRRERERCDHDQPQEGDAA Sbjct: 17486 VKTNCCLPPAALAQKLLERLHSPEVMGELEKQSASFFEAEVKRRERERCDHDQPQEGDAA 17665 Query: 301 KASRSDWLHQVDLRLRAVVQQYMKEFKKSGKLLPGTGALVSKCREEQYAQVKAMLACRQD 360 KASRSDWLHQVDLRLRAVVQQYMKEFKKSGKLLPGTGALVSKCREEQYAQVKAMLACRQD Sbjct: 17666 KASRSDWLHQVDLRLRAVVQQYMKEFKKSGKLLPGTGALVSKCREEQYAQVKAMLACRQD 17845 Query: 361 DEAFDARK 368 DEAFDARK Sbjct: 17846 DEAFDARK 17869 >gb|AAHK01000470.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053504137, whole genome shotgun sequence Length = 33961 Score = 718 bits (1853), Expect = 0.0 Identities = 351/368 (95%), Positives = 360/368 (97%) Frame = +3 Query: 1 MRICLVLLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRHGGVVEAVLELDTFISSYEE 60 MRICLVLLSGLPGAGKT LSLAIQRLSE+VTTEGERSNSRHGGVVEAVLELDTFI SYEE Sbjct: 25020 MRICLVLLSGLPGAGKTALSLAIQRLSEEVTTEGERSNSRHGGVVEAVLELDTFIFSYEE 25199 Query: 61 RDGTQRNGSNFSPEAWRRACDEVREATFQRIRQCLLNPEKKRGRNMSSTTTRFVFLVDTL 120 RD TQRNGSNFSPEAWRRACDEVREATFQR+RQCLLNPEKKRGRNMSSTTTRFVFLVDTL Sbjct: 25200 RDRTQRNGSNFSPEAWRRACDEVREATFQRLRQCLLNPEKKRGRNMSSTTTRFVFLVDTL 25379 Query: 121 PYRSMRASYWKLCRDLGKEQFQHKLERDGVMNKCDGRVPFDAVFVNMVEIRLNTPIEICL 180 PYRSMRASYWKLCRDLGKEQFQH LERD VMNKCDGRVP DAVFVNMVEIRLNTPIEICL Sbjct: 25380 PYRSMRASYWKLCRDLGKEQFQHNLERDEVMNKCDGRVPLDAVFVNMVEIRLNTPIEICL 25559 Query: 181 ERNERRTETPQYVPPHVIKNMGGSFDVGVDTSAKFSADDNCWVVSPRQASTPWPVIWLEE 240 ERNERR+ETPQY+PPHVIK+MG SFDVGVDTSAKFSADDNCWVVSPRQASTPWPVIWLE+ Sbjct: 25560 ERNERRSETPQYIPPHVIKSMGDSFDVGVDTSAKFSADDNCWVVSPRQASTPWPVIWLED 25739 Query: 241 VKTNCCLPPAALAQKLLERLHSPEVMGELEKQSASFFEAEVKRRERERCDHDQPQEGDAA 300 V+TNCCLPPAALAQKLLER+HS EVMGELEKQSASFFEAEVKRRERERCDHDQPQEGDAA Sbjct: 25740 VETNCCLPPAALAQKLLERIHSSEVMGELEKQSASFFEAEVKRRERERCDHDQPQEGDAA 25919 Query: 301 KASRSDWLHQVDLRLRAVVQQYMKEFKKSGKLLPGTGALVSKCREEQYAQVKAMLACRQD 360 KASRSDWLHQVDLRLRAVVQQYMKEFKKSGKLLPGTGALVSKCREEQYA+VKAMLACRQD Sbjct: 25920 KASRSDWLHQVDLRLRAVVQQYMKEFKKSGKLLPGTGALVSKCREEQYAKVKAMLACRQD 26099 Query: 361 DEAFDARK 368 DEAFDARK Sbjct: 26100 DEAFDARK 26123 >gb|AAHK01000054.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053506247, whole genome shotgun sequence Length = 86674 Score = 35.8 bits (81), Expect = 0.14 Identities = 14/25 (56%), Positives = 22/25 (88%) Frame = +1 Query: 5 LVLLSGLPGAGKTTLSLAIQRLSEQ 29 +++L G+PGAGKTTLSLA+ ++E+ Sbjct: 20338 VIMLCGIPGAGKTTLSLALMAMAER 20412 >gb|AAHK01000255.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053506629, whole genome shotgun sequence Length = 46566 Score = 31.2 bits (69), Expect = 3.3 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 12/108 (11%) Frame = +3 Query: 5 LVLLSGLPGAGKTTLSLAIQRLSE----QVTTEGERSNSRHGGVVEAVL-ELDTFISS-- 57 +V++ G PG+GKT L+ + +LSE T G N HG ++ +L L + + S Sbjct: 10557 IVIIYGPPGSGKTVLARELLKLSEFDSKTYLTGGVLHNRPHGSPLDEILTALRSALHSNG 10736 Query: 58 -----YEERDGTQRNGSNFSPEAWRRACDEVREATFQRIRQCLLNPEK 100 E + RN + A E R AT + + EK Sbjct: 10737 DIGIVIENVENYFRNNGPMDGVTLKLALQEFRTATHSHVPSRMHGAEK 10880 >gb|AAHK01001644.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053509509, whole genome shotgun sequence Length = 10546 Score = 30.8 bits (68), Expect = 4.3 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 20/101 (19%) Frame = +3 Query: 5 LVLLSGLPGAGKTTLSLAIQRL-------SEQVTTEGERSNSRHGGVVEAVL---ELDTF 54 +V++ GLPG GKT ++ IQR S + GGVV L E++ Sbjct: 3801 IVIMVGLPGRGKTYIARQIQRYFKWNGLQSRIFIRSTYKEKLEEGGVVSTALSAAEVERR 3980 Query: 55 ISSYEERDGTQ----------RNGSNFSPEAWRRACDEVRE 85 I++ +D TQ NG+N SP +RE Sbjct: 3981 IAAAIAKDMTQFIDETDGVAVLNGTNCSPLRRMALMSAIRE 4103 >gb|AAHK01001286.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053509831, whole genome shotgun sequence Length = 14491 Score = 30.8 bits (68), Expect = 4.3 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%) Frame = -3 Query: 5 LVLLSGLPGAGKTTLSLAIQRLSE----QVTTEGERSNSRHGGVVEAVL 49 +V++ G PG+GKT L+ + +LSE T G N HG ++ +L Sbjct: 3779 IVIIYGPPGSGKTVLARELLKLSEFDSKTYLTGGVLHNRPHGSPLDEIL 3633 >gb|AAHK01002164.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053511135, whole genome shotgun sequence Length = 7079 Score = 30.4 bits (67), Expect = 5.7 Identities = 17/70 (24%), Positives = 32/70 (45%) Frame = +2 Query: 242 KTNCCLPPAALAQKLLERLHSPEVMGELEKQSASFFEAEVKRRERERCDHDQPQEGDAAK 301 K CLP L R +SP++ + F+ + K++E+++ +HD P Sbjct: 6251 KERFCLP-------LQARFNSPQLSVDSTNAKGKEFKKKKKKKEKKKSEHDIPTPSIV*L 6409 Query: 302 ASRSDWLHQV 311 ++DW Q+ Sbjct: 6410 FLQADWRRQM 6439 >gb|AAHK01000841.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053504313, whole genome shotgun sequence Length = 22313 Score = 30.4 bits (67), Expect = 5.7 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%) Frame = -3 Query: 261 HSPEVMGELEKQSASF--FEAEVKRRERERCDHDQPQEGDAAKASRSDW------LHQVD 312 H + G ++ + A+ +V ++R R HD PQ A + S S W LH V+ Sbjct: 12036 HQRQRPGRVQTKPATLRCMHIDVADQQRGRTQHDAPQRHHAQRLSHSAW*VDRGRLHHVN 11857 Query: 313 LR 314 LR Sbjct: 11856 LR 11851 >gb|AAHK01001212.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053504249, whole genome shotgun sequence Length = 15517 Score = 30.0 bits (66), Expect = 7.4 Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 12/139 (8%) Frame = +1 Query: 186 RTETPQYVP-----PHVIKNMGGSFDVGVDTSAKFSAD-----DNCWVVSPRQASTPWPV 235 R+ +P VP PH+ N + + + K++ D V+S R + P+P+ Sbjct: 12928 RSLSPAKVPTEPRQPHLPDNQRDLYSCRLQQACKYNFPSQLLLDGSHVLSSRLGNHPYPL 13107 Query: 236 IWLEEVKTNCCLPPAALAQKLLERLHSPEVM-GELEKQSASFFEAEVKRRERERCDHDQP 294 W +PPA + SP+++ G L S++F E + + P Sbjct: 13108 FWRRNSFHRLDIPPALPS--------SPQLLPGLLGFLSSNFMNCEAMQGK*RYPSRTTP 13263 Query: 295 QEGDAA-KASRSDWLHQVD 312 ++ +S+ DW H D Sbjct: 13264 RQRQTPHHSSQQDWEHGED 13320 >gb|AAHK01000017.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053511127, whole genome shotgun sequence Length = 114992 Score = 29.6 bits (65), Expect = 9.7 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = -2 Query: 254 QKLLERLHSP-EVMGELEKQSASFFEAEVKRRERERCDHDQPQEGDAAKASRSDWLHQVD 312 Q+LL RL++ E E+ + + + K ++++RCD P + S W H +D Sbjct: 87988 QQLLPRLYTAREREREISVRPVGKEKNKQKNKKKKRCDFAAPSNFSTTQPLLSSWHHVMD 87809 Query: 313 LRL 315 L L Sbjct: 87808 LPL 87800 Database: genome.fa Posted date: Jan 19, 2010 5:13 PM Number of letters in database: 89,612,356 Number of sequences in database: 32,746 Lambda K H 0.319 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,544,371 Number of Sequences: 32746 Number of extensions: 883468 Number of successful extensions: 5245 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4530 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5243 length of query: 386 length of database: 29,870,785 effective HSP length: 108 effective length of query: 278 effective length of database: 26,334,217 effective search space: 7320912326 effective search space used: 7320912326 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 65 (29.6 bits)