TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|70879148|gb|EAN92345.1| hypothetical protein, conserved [Trypanosoma cruzi] (386 letters) Database: genome.fa 218 sequences; 41,633,360 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_2 33 0.61 scaffold_19 32 1.4 scaffold_8 31 1.8 scaffold_27 31 2.3 scaffold_15 30 3.0 scaffold_13 30 3.0 scaffold_7 30 3.0 scaffold_10 30 4.0 scaffold_5 30 4.0 scaffold_11 30 5.2 >scaffold_2 Length = 3607471 Score = 32.7 bits (73), Expect = 0.61 Identities = 14/22 (63%), Positives = 19/22 (86%) Frame = +2 Query: 2 RICLVLLSGLPGAGKTTLSLAI 23 ++ LV+L GLPG+GKTTLS A+ Sbjct: 2295692 QVVLVVLCGLPGSGKTTLSRAV 2295757 Score = 32.0 bits (71), Expect = 1.0 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 222 WVVSPRQASTPWPVIWLEEVKTNCCLP 248 WV P++ ST WPV W V T+ +P Sbjct: 514447 WVSQPKRRSTWWPVWWANRVTTSLMVP 514527 >scaffold_19 Length = 781963 Score = 31.6 bits (70), Expect = 1.4 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = -3 Query: 282 KRRERERCDHDQPQEGDAAKA-SRSDWLHQVDLRLRAVVQQ 321 + RERE DH P G AKA DW QV+ LR Q+ Sbjct: 179330 REREREMTDHVFPGPGTCAKAHDNGDWHPQVEAHLRMGQQE 179208 Score = 28.9 bits (63), Expect = 8.8 Identities = 11/35 (31%), Positives = 18/35 (51%) Frame = -3 Query: 68 GSNFSPEAWRRACDEVREATFQRIRQCLLNPEKKR 102 G P+ WR +R T +R +CL+ P K++ Sbjct: 446816 GPEIYPDTWR*GGQGIRRLTAKRAARCLVRPTKRK 446712 >scaffold_8 Length = 1300515 Score = 31.2 bits (69), Expect = 1.8 Identities = 21/66 (31%), Positives = 27/66 (40%) Frame = -2 Query: 226 PRQASTPWPVIWLEEVKTNCCLPPAALAQKLLERLHSPEVMGELEKQSASFFEAEVKRRE 285 P ASTP P+ + C LP A Q +SP+V G K S S + R+ Sbjct: 732665 PDPASTPNPLAQIPCKLARCFLPAADFFQSSRHLKNSPDVFGFAFKPSIS-NNGRISARQ 732489 Query: 286 RERCDH 291 C H Sbjct: 732488 LSNCSH 732471 >scaffold_27 Length = 606668 Score = 30.8 bits (68), Expect = 2.3 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 11/104 (10%) Frame = -2 Query: 272 QSASFFEAEVKRRERERCDHDQPQ-EGDAAKASRSDWLHQVDLRL----------RAVVQ 320 QSA EAE R E Q E DA R+DWL DLR V+Q Sbjct: 47935 QSARIAEAEATARHVEALQVQLSQFEADAESLPRADWLLPEDLRAFLAYRAAPLDSQVLQ 47756 Query: 321 QYMKEFKKSGKLLPGTGALVSKCREEQYAQVKAMLACRQDDEAF 364 + ++ L G L++ E++ A V D++AF Sbjct: 47755 HVVCRELRARSLNVSNGLLINNSDEDEDAFVLEDHGDTDDEDAF 47624 >scaffold_15 Length = 1049915 Score = 30.4 bits (67), Expect = 3.0 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%) Frame = -3 Query: 225 SPRQASTPWPVIWLEEVKTNCCLP---PAALAQKLLERLHSP 263 +P STPWP +WL +P P A + LHSP Sbjct: 125850 NPTYPSTPWPRLWLPASTRGAAMPHSRPLTNATHHVAHLHSP 125725 >scaffold_13 Length = 1102880 Score = 30.4 bits (67), Expect = 3.0 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 15/55 (27%) Frame = +1 Query: 213 AKFSADDNCWVVSPRQASTPWPVI-------------WLEEVKTNCCL--PPAAL 252 ++F A W P+QA++ WP WL ++TN C+ PP AL Sbjct: 943762 SEFGATSRVWSRGPKQATSTWPWSRCGWQAWPYWAWSWLSPLRTNPCVFAPPLAL 943926 >scaffold_7 Length = 1435906 Score = 30.4 bits (67), Expect = 3.0 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = +2 Query: 89 QRIRQCLLNPEKKRGRNMSSTTTRFVFL-VDTLPYRSMRASYWKLCR 134 +R CL+ + GR + ST RFV +LP M A +W+L R Sbjct: 862985 ERRHACLMRVAPRAGRKLGSTAWRFVKAHAHSLPAELMDAVHWRLHR 863125 >scaffold_10 Length = 1258938 Score = 30.0 bits (66), Expect = 4.0 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Frame = -2 Query: 266 MGELEKQSASFFEAEVKRRERERCDHDQPQEGDAAKASRSDWLHQVDLRLRAVVQQYMKE 325 +G K+ A E E RER+RC+ DQ Q A + L +++ RL A + Sbjct: 112778 LGRCTKEQAKQIEQE---RERKRCECDQEQVCLAPLRTSFQLLARMESRLPAAID----- 112623 Query: 326 FKKSGKLLPGTGALVSKCREEQYA-QVKAMLACR 358 GKL G L ++ RE Q+K+ A R Sbjct: 112622 ---GGKLKGGGRVLQNEHRESATTHQIKSAHATR 112530 >scaffold_5 Length = 1613056 Score = 30.0 bits (66), Expect = 4.0 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = +3 Query: 55 ISSYEERDGTQRNGSNFSPE--AWRRACDEVREATFQRIRQCLLNPEKKRG 103 +S + R+ + N S+ S + +W R + TFQ + +C+ +P K RG Sbjct: 893301 LSEWSAREESSGNRSDASAQH*SWSRGSHQQSSLTFQWVDKCVPHPPKARG 893453 Score = 29.3 bits (64), Expect = 6.7 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 Query: 230 STPWPVIWLEEVKTNCCLPPAALAQKLLERLHSPEVM 266 +TPWP +W+++ C + A+ A K H PE M Sbjct: 791925 TTPWPAVWVDK----CSMSGASRAAKRSPFSHMPESM 791827 >scaffold_11 Length = 1136692 Score = 29.6 bits (65), Expect = 5.2 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +3 Query: 218 DDNCWVVSPRQASTPWPVIWLEEVKTNCCLPPAALAQKLLERL 260 D +C R ST WP + ++CC PAA + + L+ L Sbjct: 436848 DKSCTRCPERNTSTTWPQTKQGQGHSSCCESPAAFSTRSLQPL 436976 Database: genome.fa Posted date: Jan 19, 2010 5:06 PM Number of letters in database: 41,633,360 Number of sequences in database: 218 Lambda K H 0.319 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,438,810 Number of Sequences: 218 Number of extensions: 376587 Number of successful extensions: 2830 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 24 Number of HSP's that attempted gapping in prelim test: 2202 Number of HSP's gapped (non-prelim): 1477 length of query: 386 length of database: 13,877,786 effective HSP length: 104 effective length of query: 282 effective length of database: 13,855,114 effective search space: 3907142148 effective search space used: 3907142148 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 63 (28.9 bits)