TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|70879148|gb|EAN92345.1| hypothetical protein, conserved
[Trypanosoma cruzi]
         (386 letters)

Database: genome.fa 
           1696 sequences; 31,706,682 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mex202a13.p1k                                                          96   3e-20
mex450b23.q1k                                                          34   0.21 
mex427f11.p1k                                                          31   1.8  
mex430p10.p1k                                                          31   1.8  
mex107k03.q1k                                                          30   2.3  
mex251d04.q1k                                                          30   2.3  
mex180i09.q1k                                                          30   2.3  
mex529h23.q1k                                                          30   2.3  
mex386l01.p1k                                                          30   3.9  
mex469n10.q1k                                                          29   5.1  
mex120j19.p1k                                                          29   5.1  
mex286j11.p1k                                                          29   6.7  
mex275c21.p1k                                                          29   6.7  
mex227m14.q1k                                                          28   8.7  
mex189m09.q1k                                                          28   8.7  
mex384b07.q1k                                                          28   8.7  

>mex202a13.p1k 
          Length = 30283

 Score = 96.3 bits (238), Expect = 3e-20
 Identities = 91/362 (25%), Positives = 152/362 (41%), Gaps = 41/362 (11%)
 Frame = +3

Query: 5     LVLLSGLPGAGKTTLSLAIQR-LSEQVTTEG--ERSNSRHGGVVEAVLELDTFISSYE-- 59
             L L++G+P AGK+T   A QR + ++ T  G       R  G + AVL+LD  ++  E  
Sbjct: 13311 LFLVTGIPAAGKSTFLAAAQRHVVQRDTVSGIVPLFGGRCHGRMCAVLQLDKVLADLEAA 13490

Query: 60    ---ERDGTQRNGSN-FSPEAWRRACDEVREATFQRIRQCLLNPEKKRGRNMSSTTTRFVF 115
                E+D     G   FSP  WRRA   + E T   +R C+++     G    +     VF
Sbjct: 13491 TVHEKDPAASAGERKFSPRLWRRATRRLLELTRSALRTCIVDTVD--GDATENAVVPMVF 13664

Query: 116   LVDTLPYRSMRASYWKLCRDLGKEQFQHKLERDGVMNKCDGRVPFDAVFVNMVEIRLNTP 175
             + D + YRSMR  Y+++CR L  E++  +   +        R     +F    E+R  TP
Sbjct: 13665 VEDNMHYRSMRERYYQMCRTLESEEYSLQWPHEDPTAAAQSRQTLIVLF----ELRFATP 13832

Query: 176   IEICLERNERRTETPQ-----------YVPPHVIKNMGGSFDVGVDTSAKFSADDNCWVV 224
             + +CL RN +R +  +           +VPP VI +M   F             D+C+  
Sbjct: 13833 LAVCLARNAQRRDPREGSGKEQACASAWVPPPVICSMDALF-------------DHCYAT 13973

Query: 225   SPRQASTPWPVIWLEEVKTNCCLPPAALAQKLLERLHSPEVMGELEKQSAS-FFEAEVKR 283
             +       W        +      P  L     +   + E+   L  ++A+ FF+  ++R
Sbjct: 13974 ADLVDHAVWEPCHWNGWQWTATTQPWGLLVHATQGAEAEEICPALVSETAAGFFDVALQR 14153

Query: 284   RE-----RERCDH----------DQPQEGDAAKASRS-----DWLHQVDLRLRAVVQQYM 323
              E     +++C +          D  Q  +  +  R+        HQ+DL+LR VV  ++
Sbjct: 14154 PEAWDACQKQCQNIARSRPQRLRDDGQMDETTRLQRAAEAVESHTHQLDLQLRGVVHAFL 14333

Query: 324   KE 325
              +
Sbjct: 14334 HQ 14339


>mex450b23.q1k 
          Length = 8702

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 14/24 (58%), Positives = 21/24 (87%)
 Frame = -1

Query: 3    ICLVLLSGLPGAGKTTLSLAIQRL 26
            + +V+L GLPGAGK+TL++A+ RL
Sbjct: 3617 LTVVVLCGLPGAGKSTLAMALSRL 3546


>mex427f11.p1k 
          Length = 77191

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
 Frame = -3

Query: 278   EAEVKRRERERCD--------------HDQPQEGDAAKASRSDWLHQVDLRLRAVVQQYM 323
             E ++KR+++ RCD                +P+EGD    S      + + +  A V++  
Sbjct: 16994 EKKIKRKKKRRCDEGLSKKKRTGPHNRRTRPREGDGGGGSNK----KKERKKIAKVEEKE 16827

Query: 324   KEFKKSGKLLPGTGALVSKCREEQ 347
             K+ K   K  P  GA  +KCR E+
Sbjct: 16826 KQ-KDKRKETPEKGATCNKCRSER 16758


>mex430p10.p1k 
          Length = 12906

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 24/89 (26%), Positives = 36/89 (40%)
 Frame = -2

Query: 278   EAEVKRRERERCDHDQPQEGDAAKASRSDWLHQVDLRLRAVVQQYMKEFKKSGKLLPGTG 337
             E  VKR ERE C   Q   G+     R     Q+  R +   QQ  +E K++     G  
Sbjct: 12191 EQTVKRGEREGCISGQNASGNCQTKRRQHRCAQIYARQQQQQQQRQRESKET-----GAA 12027

Query: 338   ALVSKCREEQYAQVKAMLACRQDDEAFDA 366
             +   +   ++      M  CR D+E  +A
Sbjct: 12026 SRAVRRTHKRTPTFGRMHVCRDDEEREEA 11940


>mex107k03.q1k 
          Length = 16814

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +1

Query: 242  KTNCCLPPAALAQKLLERLHSPEVMGELEKQSASFFEAEVKRRERERCD-HDQPQEGDAA 300
            +T CCL   A+ Q  + RLH     G     +A      V R  R R D H++P    A 
Sbjct: 7675 RTACCLIVLAMLQCDVARLH-----GSCAPSAAPAHRGRVPRGPRYRTDRHERPSRRPAR 7839

Query: 301  KASRSDW 307
             + R  W
Sbjct: 7840 SSQRPRW 7860


>mex251d04.q1k 
          Length = 233342

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +1

Query: 222   WVVSPRQASTP----WPVIWLEEVKTNCCLPPAALA 253
             W  S   + +P    W  +W+E +   CC PPA+ A
Sbjct: 89533 WSGSAASSHSPTAPMWRTVWIETLVRECCAPPASAA 89640


>mex180i09.q1k 
          Length = 344920

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
 Frame = -3

Query: 9      SGLPGA-GKTTLSLAIQRLSEQVTTEGERSNSRHGGVVEAVLELDTFISSYEERDGTQRN 67
              S  PGA G +++   + + SE+ T        R GGV  A  EL   +S     DG+   
Sbjct: 315635 SAYPGASGMSSVLTVVTKHSEEETARSAGDAHREGGVGAAARELGEALSHARGGDGSPVQ 315456

Query: 68     GSNFS------PEAWRRACDEVREAT 87
              GS  +      P   R A  E  +AT
Sbjct: 315455 GSGHALIGYDKPSHLRCATGENNQAT 315378


>mex529h23.q1k 
          Length = 211377

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 72   SPEAWRRACDEVREATFQRIRQCLLNPEKKRG 103
            +P  WR  C    + T QR R   L PE+ RG
Sbjct: 5261 APPCWRAGCTPGTQTTLQRYRARPLRPERARG 5356


>mex386l01.p1k 
          Length = 93834

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 41    HGGVVEAVLELDTFISSYEERDGTQRNGSNFSPEAWRRACDEVR 84
             HG    AVL  +  + S  ER G+  +    + EA RR C++ R
Sbjct: 82725 HGAAQSAVLRHNVLVWSPAERRGSNSHHDTAAAEACRRRCNDCR 82594


>mex469n10.q1k 
          Length = 29490

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
 Frame = -3

Query: 173   NTPIEICLERNERRTETPQYVPPHVIKNMGGSFDVGVDTSAKFSADDNC-----WVVSPR 227
             N+P+ + L   E  + +P+ +P   +   GG+   G  ++     +  C         P 
Sbjct: 18100 NSPVHVPLGSREPDSASPRALPLVFLHRRGGALHSGAVSAVNIR*ESACAPRRHLCAQPN 17921

Query: 228   QASTPWPVIWLEEVKTNCCL 247
                 PWP    + ++ +CCL
Sbjct: 17920 ALRRPWP--RADYLRAHCCL 17867


>mex120j19.p1k 
          Length = 34771

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +1

Query: 66    RNGSNFSPEAWRRACDEVREATFQRIRQCLLNP 98
             R+   FSP  W  ACD  R + F  IR C L P
Sbjct: 29545 RHAPTFSPPTWGGACD--RPSPFFSIRFCRLGP 29637


>mex286j11.p1k 
          Length = 100395

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = +3

Query: 6     VLLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRHGGVV-----EAVLELD 52
             +LL G PG GKTT  L + R     +T+   + +  GG       +AVLEL+
Sbjct: 36255 LLLCGPPGTGKTTSMLCLARDLLLQSTDAGSAGASPGGATKDILKDAVLELN 36410


>mex275c21.p1k 
          Length = 331335

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 220    NCWVVSPRQASTPWP 234
              +CW  SPRQAS+P+P
Sbjct: 143070 SCWRASPRQASSPFP 143114


>mex227m14.q1k 
          Length = 24589

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 206   DVGVDTSAKFSADDNCWVVSPRQASTPWPVIW 237
             D     S KFS+   C   SPR+ S   PVIW
Sbjct: 23476 DSACTRSFKFSSPTQCPCASPRRFSVASPVIW 23571


>mex189m09.q1k 
          Length = 2860

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -3

Query: 236  IWLEEVKTNCCLPPAALAQKLLERLHSPEVMGELEKQSASFFEAEVKRRERERCDHDQPQ 295
            I LE V+     P   ++++   RLHS EV+GE   +S  F   +V +R    C     Q
Sbjct: 2603 ISLERVRRRVA-PERQVSERHQSRLHSVEVLGEGTGESLVFMR-QVHKRNNHDCQRVP*Q 2430

Query: 296  E-GDAAKASRSDWLHQV 311
            E GD       D  H+V
Sbjct: 2429 EAGDHVHIIVRDPKHKV 2379


>mex384b07.q1k 
          Length = 12099

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -2

Query: 236  IWLEEVKTNCCLPPAALAQKLLERLHSPEVMGELEKQSASFFEAEVKRRERERCDHDQPQ 295
            I LE V+     P   ++++   RLHS EV+GE   +S  F   +V +R    C     Q
Sbjct: 3710 ISLERVRRRVA-PERQVSERHQSRLHSVEVLGEGTGESLVFMR-QVHKRNNHDCQRVP*Q 3537

Query: 296  E-GDAAKASRSDWLHQV 311
            E GD       D  H+V
Sbjct: 3536 EAGDHVHIIVRDPKHKV 3486


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 31,706,682
  Number of sequences in database:  1696
  
Lambda     K      H
   0.319    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,258,793
Number of Sequences: 1696
Number of extensions: 332172
Number of successful extensions: 2538
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 151
Number of HSP's that attempted gapping in prelim test: 1820
Number of HSP's gapped (non-prelim): 1339
length of query: 386
length of database: 10,568,894
effective HSP length: 102
effective length of query: 284
effective length of database: 10,395,902
effective search space: 2952436168
effective search space used: 2952436168
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)