TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|70879148|gb|EAN92345.1| hypothetical protein, conserved
[Trypanosoma cruzi]
         (386 letters)

Database: genome.fa 
           799 sequences; 32,967,507 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_22                                                            30   2.4  
scaffold_131                                                           29   5.4  

>scaffold_22 
          Length = 145158

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +3

Query: 6     VLLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRHGGVVEAVLE 50
             VLLSG PG GKT+ ++ + +L      E   S++R    +E VL+
Sbjct: 67605 VLLSGPPGIGKTSAAILLCKLKGFEPIELNASDTRSKSEIERVLK 67739


>scaffold_131 
          Length = 73580

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 5     LVLLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRHGGVVEAVLELDTFISSYEER 61
             +VLL G+PG+GK+ L   +     + + EGE   +RH     +  + DT   S ++R
Sbjct: 63661 MVLLMGIPGSGKSVLLKTLGNRLGKGSIEGELLFNRH-PCAPSTHQRDTIYVSQDDR 63828


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:50 PM
  Number of letters in database: 32,967,507
  Number of sequences in database:  799
  
Lambda     K      H
   0.319    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,531,120
Number of Sequences: 799
Number of extensions: 124943
Number of successful extensions: 439
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 83
length of query: 386
length of database: 10,989,169
effective HSP length: 102
effective length of query: 284
effective length of database: 10,907,671
effective search space: 3097778564
effective search space used: 3097778564
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)